Wall clock time and date at job start Tue Mar 31 2020 15:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 C 1.53001 * 109.46687 * 65.00336 * 3 2 1 5 5 C 1.53003 * 109.47092 * 185.00000 * 4 3 2 6 6 C 1.50691 * 109.47299 * 185.00111 * 3 2 1 7 7 C 1.41249 * 126.70727 * 275.00474 * 6 3 2 8 8 C 1.36851 * 103.85077 * 179.97438 * 7 6 3 9 9 C 1.47462 * 126.94465 * 180.02562 * 8 7 6 10 10 O 1.21595 * 120.00611 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99506 * 179.97438 * 9 8 7 12 12 C 1.39827 * 119.99764 * 174.89217 * 11 9 8 13 13 C 1.39317 * 119.95250 * 325.54237 * 12 11 9 14 14 C 1.38478 * 120.42405 * 179.72037 * 13 12 11 15 15 C 1.37686 * 120.32700 * 0.55394 * 14 13 12 16 16 C 1.40748 * 119.88976 * 359.72404 * 15 14 13 17 17 C 1.41404 * 120.20986 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00203 * 25.14056 * 17 16 15 19 19 C 1.39932 * 120.00262 * 205.13974 * 17 16 15 20 20 N 1.30831 * 119.99836 * 16.78125 * 19 17 16 21 21 Si 1.86799 * 120.00287 * 196.78313 * 19 17 16 22 22 H 1.48507 * 109.46888 * 60.00079 * 21 19 17 23 23 H 1.48497 * 109.47340 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47422 * 300.00137 * 21 19 17 25 25 C 1.38272 * 119.94504 * 145.81333 * 12 11 9 26 26 O 1.34639 * 106.10123 * 0.02562 * 8 7 6 27 27 N 1.20887 * 111.47367 * 359.70692 * 26 8 7 28 28 H 1.09002 * 109.47318 * 59.99732 * 1 2 3 29 29 H 1.09004 * 109.46481 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46703 * 299.99582 * 1 2 3 31 31 H 1.09006 * 109.46559 * 240.00251 * 2 1 3 32 32 H 1.09000 * 109.47378 * 120.00811 * 2 1 3 33 33 H 1.09004 * 109.46933 * 305.00603 * 3 2 1 34 34 H 1.09004 * 109.47308 * 304.99648 * 4 3 2 35 35 H 1.08998 * 109.47290 * 64.99747 * 4 3 2 36 36 H 1.08998 * 109.47260 * 59.99729 * 5 4 3 37 37 H 1.08999 * 109.47080 * 179.97438 * 5 4 3 38 38 H 1.09002 * 109.47101 * 300.00400 * 5 4 3 39 39 H 1.08004 * 128.07062 * 0.02562 * 7 6 3 40 40 H 0.97002 * 120.00448 * 354.89847 * 11 9 8 41 41 H 1.08001 * 119.78766 * 359.97364 * 13 12 11 42 42 H 1.08003 * 119.83483 * 180.27814 * 14 13 12 43 43 H 1.07997 * 120.06073 * 179.74863 * 15 14 13 44 44 H 0.97003 * 119.99955 * 180.02562 * 20 19 17 45 45 H 1.07999 * 120.16989 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1264 1.3074 5 6 2.0354 3.6023 1.2561 6 6 3.5419 1.4443 -0.1239 7 6 4.4759 1.3138 0.9277 8 6 5.6892 1.3765 0.2978 9 6 7.0201 1.2911 0.9272 10 8 7.1154 1.1493 2.1310 11 7 8.1308 1.3693 0.1678 12 6 9.3910 1.3960 0.7730 13 6 9.5604 2.0352 1.9992 14 6 10.8028 2.0625 2.6101 15 6 11.8877 1.4674 2.0062 16 6 11.7331 0.8228 0.7646 17 6 12.8426 0.2089 0.1387 18 1 13.6778 -0.1314 0.7329 19 6 12.8584 0.0423 -1.2506 20 7 12.0329 0.7260 -2.0008 21 14 14.0580 -1.1563 -2.0340 22 1 13.8042 -2.5231 -1.5117 23 1 13.8746 -1.1481 -3.5076 24 1 15.4482 -0.7511 -1.7055 25 6 10.4684 0.7926 0.1509 26 8 5.4221 1.5319 -1.0127 27 7 4.2317 1.5611 -1.2212 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8935 -0.5139 0.8899 33 1 1.6054 1.9815 -0.8418 34 1 0.5564 2.0469 1.4402 35 1 2.1409 1.6418 2.1427 36 1 1.5299 4.0870 0.4208 37 1 1.7467 4.0896 2.1873 38 1 3.1144 3.6819 1.1232 39 1 4.2785 1.1921 1.9825 40 1 8.0561 1.4072 -0.7986 41 1 8.7164 2.5090 2.4784 42 1 10.9224 2.5569 3.5629 43 1 12.8556 1.4948 2.4846 44 1 12.0436 0.6103 -2.9638 45 1 10.3392 0.3001 -0.8016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456726296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:12 Heat of formation + Delta-G solvation = 25.548433 kcal Electronic energy + Delta-G solvation = -26891.406013 eV Core-core repulsion = 23069.253583 eV Total energy + Delta-G solvation = -3822.152430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.06120 -39.75098 -37.87806 -37.28813 -34.51010 -33.45394 -33.29761 -32.10898 -31.91338 -29.60551 -28.54595 -27.34127 -25.32227 -24.26720 -23.50940 -22.92701 -21.46675 -21.21361 -20.51680 -19.49615 -18.26795 -17.76555 -17.48652 -16.35619 -15.79073 -15.33498 -15.04351 -14.93550 -14.84128 -14.56571 -14.40197 -14.27350 -13.88840 -13.51220 -13.15120 -12.90215 -12.79140 -12.41654 -12.39306 -12.11143 -11.73070 -11.71881 -11.66055 -11.46501 -11.35577 -11.14564 -10.99836 -10.83650 -10.80258 -10.74235 -10.25740 -10.14177 -9.84288 -9.73402 -9.69330 -9.31902 -9.09065 -7.44710 -7.11581 -6.75333 -4.41716 0.80103 1.94864 2.58105 2.72844 2.84094 3.05071 3.07803 3.18480 3.37984 3.48145 3.77687 3.90751 4.27068 4.53070 4.59174 4.68430 4.74600 4.88644 4.98139 4.99764 5.08450 5.14248 5.33415 5.37492 5.42351 5.52427 5.61150 5.61261 5.68614 5.76184 5.85087 5.88908 5.98571 6.02358 6.19943 6.52202 6.56263 6.77378 6.93955 7.00544 7.19091 7.48444 7.53874 7.83221 7.92497 7.97486 8.08310 8.21688 8.36373 8.59655 8.83686 8.88456 10.14940 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019200 B = 0.002498 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.013401 B =11205.971620 C =12145.303789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.009 4.009 4 C -0.119 4.119 5 C -0.155 4.155 6 C 0.021 3.979 7 C -0.155 4.155 8 C -0.070 4.070 9 C 0.593 3.407 10 O -0.497 6.497 11 N -0.644 5.644 12 C 0.140 3.860 13 C -0.228 4.228 14 C -0.084 4.084 15 C -0.225 4.225 16 C 0.120 3.880 17 C -0.462 4.462 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.797 5.797 21 Si 0.909 3.091 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.176 4.176 26 O 0.115 5.885 27 N -0.347 5.347 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.181 0.819 40 H 0.410 0.590 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.281 0.719 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.372 0.968 1.023 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.028 4.028 4 C -0.157 4.157 5 C -0.213 4.213 6 C -0.137 4.137 7 C -0.177 4.177 8 C -0.136 4.136 9 C 0.377 3.623 10 O -0.372 6.372 11 N -0.287 5.287 12 C 0.049 3.951 13 C -0.249 4.249 14 C -0.103 4.103 15 C -0.245 4.245 16 C 0.117 3.883 17 C -0.492 4.492 18 H 0.097 0.903 19 C -0.141 4.141 20 N -0.423 5.423 21 Si 0.733 3.267 22 H -0.188 1.188 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.197 4.197 26 O 0.043 5.957 27 N -0.048 5.048 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.198 0.802 40 H 0.245 0.755 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.700 1.079 0.334 19.733 hybrid contribution 0.542 -0.525 -0.229 0.789 sum -19.159 0.554 0.105 19.167 Atomic orbital electron populations 1.21825 0.95027 1.01994 1.02104 1.21566 0.96269 0.94826 1.02892 1.19691 0.85498 0.97642 0.99963 1.21657 1.01814 0.95968 0.96240 1.21815 1.01885 0.95771 1.01813 1.23519 0.98671 1.03083 0.88396 1.22745 0.89383 1.03546 1.02040 1.24452 0.97492 1.07483 0.84209 1.16572 0.80989 0.78457 0.86305 1.90883 1.84960 1.48526 1.12848 1.43344 1.04778 1.70176 1.10368 1.17566 0.82334 1.00324 0.94923 1.20277 0.97342 1.09584 0.97659 1.20413 0.92793 0.99282 0.97829 1.21066 0.97085 1.06583 0.99724 1.17363 0.91839 0.88607 0.90491 1.19514 1.03431 1.34522 0.91686 0.90277 1.25891 0.96026 0.94544 0.97642 1.69792 1.33351 1.32474 1.06651 0.86361 0.80992 0.81455 0.77891 1.18847 1.20361 1.18990 1.21099 0.91150 1.04747 1.02732 1.84995 1.19389 1.66433 1.24886 1.73723 0.89311 1.17652 1.24153 0.92578 0.92409 0.92156 0.91605 0.91260 0.89234 0.90509 0.91184 0.92707 0.92336 0.92634 0.80215 0.75470 0.88058 0.88838 0.88698 0.90820 0.85751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C -0.12 -0.92 5.38 -26.73 -0.14 -1.06 16 3 C -0.01 -0.08 2.33 -91.78 -0.21 -0.29 16 4 C -0.12 -0.87 4.99 -26.73 -0.13 -1.00 16 5 C -0.16 -1.26 9.72 37.16 0.36 -0.89 16 6 C 0.02 0.25 5.31 -82.17 -0.44 -0.18 16 7 C -0.15 -1.97 9.62 -38.94 -0.37 -2.34 16 8 C -0.07 -1.05 7.29 -36.33 -0.26 -1.31 16 9 C 0.59 10.71 7.54 -12.50 -0.09 10.62 16 10 O -0.50 -10.31 14.66 5.28 0.08 -10.23 16 11 N -0.64 -12.21 5.33 -10.88 -0.06 -12.27 16 12 C 0.14 3.20 6.24 -83.80 -0.52 2.68 16 13 C -0.23 -5.26 8.66 -39.09 -0.34 -5.60 16 14 C -0.08 -1.92 10.01 -39.69 -0.40 -2.32 16 15 C -0.22 -5.45 9.79 -38.84 -0.38 -5.83 16 16 C 0.12 3.13 5.57 -106.85 -0.59 2.53 16 17 C -0.46 -11.92 9.05 -37.74 -0.34 -12.26 16 18 H 0.08 1.96 7.90 -52.48 -0.41 1.55 16 19 C 0.08 1.86 5.16 -17.34 -0.09 1.77 16 20 N -0.80 -19.76 10.94 55.55 0.61 -19.15 16 21 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 25 C -0.18 -4.39 8.60 -38.67 -0.33 -4.73 16 26 O 0.11 1.67 11.05 15.56 0.17 1.84 16 27 N -0.35 -4.85 12.04 33.52 0.40 -4.45 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.31 6.46 -51.93 -0.34 -0.02 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.44 6.34 -51.93 -0.33 0.11 16 35 H 0.07 0.51 7.22 -51.93 -0.37 0.13 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.55 7.00 -51.93 -0.36 0.19 16 39 H 0.18 1.99 7.53 -52.48 -0.40 1.60 16 40 H 0.41 6.81 8.65 -40.82 -0.35 6.45 16 41 H 0.10 2.28 6.48 -52.49 -0.34 1.94 16 42 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 43 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 44 H 0.28 6.36 8.30 -40.82 -0.34 6.03 16 45 H 0.12 3.15 6.17 -52.49 -0.32 2.82 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -28.31 375.03 -8.28 -36.59 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.17 Total: 9.55 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -3.94 Total: -20.77 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.95 Total: -35.87 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.25 Total: -8.39 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.31 -8.28 -36.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456726296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.142 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds