Wall clock time and date at job start Tue Mar 31 2020 15:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 C 1.53001 * 109.46687 * 65.00336 * 3 2 1 5 5 C 1.53003 * 109.47092 * 185.00000 * 4 3 2 6 6 C 1.50691 * 109.47299 * 185.00111 * 3 2 1 7 7 C 1.41249 * 126.70727 * 275.00474 * 6 3 2 8 8 C 1.36851 * 103.85077 * 179.97438 * 7 6 3 9 9 C 1.47462 * 126.94465 * 180.02562 * 8 7 6 10 10 O 1.21595 * 120.00611 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99506 * 179.97438 * 9 8 7 12 12 C 1.39827 * 119.99764 * 174.89217 * 11 9 8 13 13 C 1.39317 * 119.95250 * 325.54237 * 12 11 9 14 14 C 1.38478 * 120.42405 * 179.72037 * 13 12 11 15 15 C 1.37686 * 120.32700 * 0.55394 * 14 13 12 16 16 C 1.40748 * 119.88976 * 359.72404 * 15 14 13 17 17 C 1.41404 * 120.20986 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00203 * 25.14056 * 17 16 15 19 19 C 1.39932 * 120.00262 * 205.13974 * 17 16 15 20 20 N 1.30831 * 119.99836 * 16.78125 * 19 17 16 21 21 Si 1.86799 * 120.00287 * 196.78313 * 19 17 16 22 22 H 1.48507 * 109.46888 * 60.00079 * 21 19 17 23 23 H 1.48497 * 109.47340 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47422 * 300.00137 * 21 19 17 25 25 C 1.38272 * 119.94504 * 145.81333 * 12 11 9 26 26 O 1.34639 * 106.10123 * 0.02562 * 8 7 6 27 27 N 1.20887 * 111.47367 * 359.70692 * 26 8 7 28 28 H 1.09002 * 109.47318 * 59.99732 * 1 2 3 29 29 H 1.09004 * 109.46481 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46703 * 299.99582 * 1 2 3 31 31 H 1.09006 * 109.46559 * 240.00251 * 2 1 3 32 32 H 1.09000 * 109.47378 * 120.00811 * 2 1 3 33 33 H 1.09004 * 109.46933 * 305.00603 * 3 2 1 34 34 H 1.09004 * 109.47308 * 304.99648 * 4 3 2 35 35 H 1.08998 * 109.47290 * 64.99747 * 4 3 2 36 36 H 1.08998 * 109.47260 * 59.99729 * 5 4 3 37 37 H 1.08999 * 109.47080 * 179.97438 * 5 4 3 38 38 H 1.09002 * 109.47101 * 300.00400 * 5 4 3 39 39 H 1.08004 * 128.07062 * 0.02562 * 7 6 3 40 40 H 0.97002 * 120.00448 * 354.89847 * 11 9 8 41 41 H 1.08001 * 119.78766 * 359.97364 * 13 12 11 42 42 H 1.08003 * 119.83483 * 180.27814 * 14 13 12 43 43 H 1.07997 * 120.06073 * 179.74863 * 15 14 13 44 44 H 0.97003 * 119.99955 * 180.02562 * 20 19 17 45 45 H 1.07999 * 120.16989 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1264 1.3074 5 6 2.0354 3.6023 1.2561 6 6 3.5419 1.4443 -0.1239 7 6 4.4759 1.3138 0.9277 8 6 5.6892 1.3765 0.2978 9 6 7.0201 1.2911 0.9272 10 8 7.1154 1.1493 2.1310 11 7 8.1308 1.3693 0.1678 12 6 9.3910 1.3960 0.7730 13 6 9.5604 2.0352 1.9992 14 6 10.8028 2.0625 2.6101 15 6 11.8877 1.4674 2.0062 16 6 11.7331 0.8228 0.7646 17 6 12.8426 0.2089 0.1387 18 1 13.6778 -0.1314 0.7329 19 6 12.8584 0.0423 -1.2506 20 7 12.0329 0.7260 -2.0008 21 14 14.0580 -1.1563 -2.0340 22 1 13.8042 -2.5231 -1.5117 23 1 13.8746 -1.1481 -3.5076 24 1 15.4482 -0.7511 -1.7055 25 6 10.4684 0.7926 0.1509 26 8 5.4221 1.5319 -1.0127 27 7 4.2317 1.5611 -1.2212 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8935 -0.5139 0.8899 33 1 1.6054 1.9815 -0.8418 34 1 0.5564 2.0469 1.4402 35 1 2.1409 1.6418 2.1427 36 1 1.5299 4.0870 0.4208 37 1 1.7467 4.0896 2.1873 38 1 3.1144 3.6819 1.1232 39 1 4.2785 1.1921 1.9825 40 1 8.0561 1.4072 -0.7986 41 1 8.7164 2.5090 2.4784 42 1 10.9224 2.5569 3.5629 43 1 12.8556 1.4948 2.4846 44 1 12.0436 0.6103 -2.9638 45 1 10.3392 0.3001 -0.8016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456726296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:11 Heat of formation + Delta-G solvation = 11.765921 kcal Electronic energy + Delta-G solvation = -26892.003667 eV Core-core repulsion = 23069.253583 eV Total energy + Delta-G solvation = -3822.750084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.14583 -41.33750 -39.06407 -38.60520 -36.18229 -35.19470 -34.31067 -33.20892 -32.60751 -31.47597 -30.27024 -28.02331 -27.20763 -25.62002 -24.46326 -23.56952 -23.16735 -22.59522 -21.78398 -20.81115 -19.48786 -19.27368 -18.87035 -17.77050 -17.26543 -16.86805 -16.55427 -16.22400 -16.07952 -15.59247 -15.42096 -15.16879 -14.99145 -14.90110 -14.50384 -14.34544 -14.19144 -13.54388 -13.52931 -13.12428 -12.95347 -12.87931 -12.83676 -12.62361 -12.52077 -12.38746 -12.34952 -12.10449 -11.95055 -11.62296 -11.60781 -11.44764 -11.41750 -11.10602 -11.06438 -10.88161 -10.84723 -9.34987 -8.92655 -8.57637 -6.35812 -0.42845 0.81015 0.98647 1.05549 1.40949 1.42693 1.50876 1.54867 1.87195 2.10914 2.22370 2.74823 2.87272 3.30378 3.68560 3.75293 3.80122 3.93541 3.99385 4.09845 4.32267 4.36706 4.45585 4.52537 4.57409 4.69033 4.72216 4.79887 4.81956 4.85413 4.95861 4.99990 5.09197 5.12755 5.16133 5.20173 5.21100 5.27591 5.33064 5.41752 5.47377 5.69205 5.77079 5.99679 6.07508 6.22977 6.41427 6.63578 6.83180 6.93415 6.94771 7.01444 8.33618 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019200 B = 0.002498 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.013401 B =11205.971620 C =12145.303789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.008 4.008 4 C -0.115 4.115 5 C -0.157 4.157 6 C 0.034 3.966 7 C -0.136 4.136 8 C -0.087 4.087 9 C 0.601 3.399 10 O -0.525 6.525 11 N -0.644 5.644 12 C 0.146 3.854 13 C -0.238 4.238 14 C -0.082 4.082 15 C -0.242 4.242 16 C 0.091 3.909 17 C -0.496 4.496 18 H 0.079 0.921 19 C 0.038 3.962 20 N -0.821 5.821 21 Si 0.980 3.020 22 H -0.263 1.263 23 H -0.268 1.268 24 H -0.260 1.260 25 C -0.198 4.198 26 O 0.103 5.897 27 N -0.361 5.361 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.199 0.801 40 H 0.419 0.581 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.104 0.896 44 H 0.289 0.711 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.219 0.728 1.239 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.028 4.028 4 C -0.153 4.153 5 C -0.214 4.214 6 C -0.125 4.125 7 C -0.158 4.158 8 C -0.153 4.153 9 C 0.387 3.613 10 O -0.402 6.402 11 N -0.288 5.288 12 C 0.053 3.947 13 C -0.259 4.259 14 C -0.100 4.100 15 C -0.262 4.262 16 C 0.088 3.912 17 C -0.525 4.525 18 H 0.097 0.903 19 C -0.178 4.178 20 N -0.447 5.447 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.192 1.192 24 H -0.184 1.184 25 C -0.219 4.219 26 O 0.033 5.967 27 N -0.064 5.064 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.216 0.784 40 H 0.256 0.744 41 H 0.126 0.874 42 H 0.142 0.858 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.556 0.853 0.540 21.580 hybrid contribution 0.962 -0.390 -0.272 1.073 sum -20.594 0.463 0.268 20.601 Atomic orbital electron populations 1.21809 0.93335 1.02593 1.02869 1.21555 0.97696 0.93790 1.02322 1.19894 0.83127 0.98640 1.01108 1.21684 1.03323 0.95065 0.95232 1.21828 1.00376 0.96627 1.02569 1.24046 1.00093 1.01007 0.87307 1.23065 0.88546 1.01171 1.03010 1.23915 0.96425 1.10008 0.84941 1.16758 0.81566 0.77074 0.85907 1.90856 1.85677 1.49629 1.13994 1.43286 1.04006 1.70487 1.10981 1.17608 0.83358 0.98965 0.94744 1.20492 0.97794 1.09727 0.97848 1.20749 0.92127 0.98393 0.98760 1.21253 0.98136 1.07196 0.99644 1.17766 0.92527 0.89291 0.91578 1.19776 1.03801 1.36047 0.92866 0.90328 1.26704 0.97801 0.95686 0.97587 1.69837 1.34432 1.33149 1.07284 0.85276 0.78650 0.78716 0.77242 1.18742 1.19220 1.18390 1.21040 0.91758 1.06287 1.02864 1.84994 1.19862 1.67259 1.24550 1.73727 0.89196 1.18414 1.25100 0.92341 0.91962 0.90855 0.93003 0.91074 0.88935 0.88175 0.90831 0.92391 0.91277 0.94878 0.78394 0.74357 0.87410 0.85773 0.87762 0.90037 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.67 71.98 0.70 -0.68 16 2 C -0.12 -1.55 5.38 30.60 0.16 -1.39 16 3 C -0.01 -0.13 2.33 -11.54 -0.03 -0.16 16 4 C -0.12 -1.35 4.99 30.60 0.15 -1.19 16 5 C -0.16 -2.20 9.72 71.98 0.70 -1.50 16 6 C 0.03 0.76 5.31 43.55 0.23 0.99 16 7 C -0.14 -3.27 9.62 22.68 0.22 -3.05 16 8 C -0.09 -2.57 7.29 24.38 0.18 -2.39 16 9 C 0.60 21.81 7.54 86.67 0.65 22.46 16 10 O -0.52 -21.71 14.66 -4.02 -0.06 -21.77 16 11 N -0.64 -24.91 5.33 -306.58 -1.63 -26.54 16 12 C 0.15 6.81 6.24 38.13 0.24 7.05 16 13 C -0.24 -11.02 8.66 22.59 0.20 -10.82 16 14 C -0.08 -3.70 10.01 22.20 0.22 -3.48 16 15 C -0.24 -11.94 9.79 22.75 0.22 -11.71 16 16 C 0.09 4.90 5.57 -21.31 -0.12 4.78 16 17 C -0.50 -26.25 9.05 23.46 0.21 -26.04 16 18 H 0.08 4.01 7.90 -2.91 -0.02 3.98 16 19 C 0.04 1.85 5.16 85.25 0.44 2.29 16 20 N -0.82 -41.42 10.94 21.82 0.24 -41.18 16 21 Si 0.98 37.45 29.59 68.60 2.03 39.48 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 25 C -0.20 -10.22 8.60 22.86 0.20 -10.02 16 26 O 0.10 2.99 11.05 65.85 0.73 3.72 16 27 N -0.36 -9.84 12.04 -48.86 -0.59 -10.43 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.50 6.46 -2.39 -0.02 0.48 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.10 0.76 6.34 -2.39 -0.02 0.74 16 35 H 0.07 0.84 7.22 -2.39 -0.02 0.82 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.03 0.60 7.00 -2.39 -0.02 0.59 16 39 H 0.20 3.97 7.53 -2.91 -0.02 3.95 16 40 H 0.42 14.36 8.65 -92.71 -0.80 13.56 16 41 H 0.11 4.82 6.48 -2.91 -0.02 4.80 16 42 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 44 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 45 H 0.11 6.00 6.17 -2.91 -0.02 5.98 16 Total: -1.00 -61.70 375.03 5.51 -56.18 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 0.22 Total: 35.39 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 4.58 Total: -34.85 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -1.98 Total: -78.15 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.67 Total: -18.05 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -61.70 5.51 -56.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456726296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.949 kcal (2) G-P(sol) polarization free energy of solvation -61.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds