Wall clock time and date at job start Tue Mar 31 2020 16:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35501 * 117.00436 * 2 1 4 4 N 1.31389 * 119.94504 * 0.02562 * 3 2 1 5 5 C 1.33673 * 122.57203 * 180.02562 * 4 3 2 6 6 C 1.47923 * 119.24535 * 179.97438 * 5 4 3 7 7 O 1.21554 * 120.00066 * 179.97438 * 6 5 4 8 8 N 1.34780 * 119.99837 * 359.97438 * 6 5 4 9 9 C 1.46503 * 119.99658 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46746 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.47004 * 300.00116 * 10 9 8 12 12 C 1.52999 * 109.47118 * 60.00175 * 10 9 8 13 13 C 1.50693 * 109.46885 * 180.02562 * 10 9 8 14 14 H 1.08004 * 120.00504 * 359.97438 * 13 10 9 15 15 C 1.37881 * 119.99831 * 180.02562 * 13 10 9 16 16 N 1.31512 * 120.00093 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 120.00061 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47210 * 89.99453 * 17 15 13 19 19 H 1.48491 * 109.47203 * 209.99644 * 17 15 13 20 20 H 1.48497 * 109.47185 * 329.99973 * 17 15 13 21 21 C 1.38266 * 121.51224 * 359.95663 * 5 4 3 22 22 C 1.40695 * 118.65043 * 0.02562 * 21 5 4 23 23 C 1.40241 * 122.04898 * 179.97438 * 22 21 5 24 24 C 1.36315 * 119.47907 * 180.02562 * 23 22 21 25 25 C 1.39252 * 120.93946 * 0.04794 * 24 23 22 26 26 C 1.36359 * 121.06217 * 359.95227 * 25 24 23 27 27 C 1.40038 * 119.59074 * 0.02562 * 26 25 24 28 28 H 1.08993 * 109.46995 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46968 * 300.00221 * 1 2 3 30 30 H 1.08999 * 109.47080 * 59.99783 * 1 2 3 31 31 H 0.96997 * 119.99537 * 359.97438 * 8 6 5 32 32 H 1.08995 * 109.47289 * 300.00193 * 9 8 6 33 33 H 1.09000 * 109.46872 * 59.99987 * 9 8 6 34 34 H 1.08992 * 109.47171 * 60.00047 * 11 10 9 35 35 H 1.08997 * 109.46622 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.46984 * 299.99897 * 11 10 9 37 37 H 1.08990 * 109.47344 * 60.00041 * 12 10 9 38 38 H 1.09006 * 109.46946 * 180.02562 * 12 10 9 39 39 H 1.09002 * 109.46628 * 299.99698 * 12 10 9 40 40 H 0.97008 * 119.99972 * 180.02562 * 16 15 13 41 41 H 1.08004 * 120.67433 * 180.30240 * 21 5 4 42 42 H 1.07997 * 120.26477 * 0.02562 * 23 22 21 43 43 H 1.07993 * 119.53150 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.46464 * 179.97438 * 25 24 23 45 45 H 1.08008 * 120.20316 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.3277 2.3086 0.0005 5 6 1.8794 3.5261 0.0000 6 6 1.0021 4.7171 0.0001 7 8 1.4891 5.8308 0.0001 8 7 -0.3374 4.5673 0.0001 9 6 -1.2063 5.7469 0.0007 10 6 -2.6701 5.3019 -0.0001 11 6 -2.9479 4.4644 -1.2501 12 6 -2.9487 4.4626 1.2485 13 6 -3.5639 6.5152 -0.0001 14 1 -3.1312 7.5048 0.0009 15 6 -4.9342 6.3620 -0.0002 16 7 -5.4611 5.1571 -0.0008 17 14 -6.0421 7.8660 0.0005 18 1 -6.3356 8.2653 -1.3994 19 1 -7.3119 7.5450 0.7003 20 1 -5.3596 8.9833 0.7011 21 6 3.2513 3.6979 -0.0001 22 6 4.0741 2.5565 -0.0004 23 6 5.4735 2.6479 -0.0011 24 6 6.2202 1.5075 -0.0018 25 6 5.6131 0.2542 -0.0028 26 6 4.2552 0.1302 -0.0022 27 6 3.4558 1.2801 -0.0010 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.7260 3.6786 -0.0003 32 1 -1.0080 6.3438 0.8909 33 1 -1.0081 6.3446 -0.8890 34 1 -2.3015 3.5869 -1.2505 35 1 -3.9907 4.1471 -1.2503 36 1 -2.7495 5.0624 -2.1396 37 1 -2.7508 5.0592 2.1389 38 1 -3.9916 4.1452 1.2477 39 1 -2.3022 3.5851 1.2479 40 1 -6.4252 5.0493 -0.0013 41 1 3.6827 4.6880 0.0044 42 1 5.9558 3.6142 -0.0011 43 1 7.2979 1.5769 -0.0019 44 1 6.2278 -0.6338 -0.0038 45 1 3.7990 -0.8488 -0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:17 Heat of formation + Delta-G solvation = -24.178063 kcal Electronic energy + Delta-G solvation = -27615.949645 eV Core-core repulsion = 23791.640913 eV Total energy + Delta-G solvation = -3824.308732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31282 -39.26028 -38.81105 -36.92736 -36.23821 -33.34018 -32.65628 -31.67373 -30.75275 -29.70476 -27.51048 -25.99589 -25.70112 -25.22958 -23.92920 -23.82759 -22.20906 -20.81268 -18.92938 -18.50215 -18.24644 -17.43860 -16.54176 -16.26824 -15.88764 -15.76490 -15.10687 -14.89659 -14.84391 -14.57948 -14.22628 -13.98763 -13.83571 -13.50764 -13.13095 -12.88822 -12.85050 -12.24573 -12.21915 -12.11382 -12.05423 -11.40574 -11.40230 -11.24830 -11.17962 -10.85282 -10.68865 -10.36840 -10.31197 -10.15004 -10.00785 -9.61597 -9.58700 -9.39655 -9.23980 -8.77451 -8.46081 -8.32354 -7.98550 -6.01016 -4.11004 0.13146 0.47762 1.65358 2.48455 2.75526 3.29044 3.35348 3.35946 3.39496 3.55333 3.97869 4.10516 4.35453 4.41348 4.53876 4.58547 4.71437 4.93340 5.04095 5.18178 5.20656 5.25757 5.27458 5.49741 5.53723 5.60452 5.67203 5.73618 6.06241 6.12014 6.18223 6.24526 6.32942 6.50524 6.53024 6.77461 6.86810 6.93367 6.98976 7.03610 7.03913 7.36632 7.57350 7.57554 7.70646 8.02304 8.08856 8.17243 8.39300 8.65002 8.89566 9.54632 11.00424 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023348 B = 0.002772 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.951598 B =10097.484605 C =11100.071609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.303 6.303 3 C 0.362 3.638 4 N -0.528 5.528 5 C 0.109 3.891 6 C 0.558 3.442 7 O -0.545 6.545 8 N -0.692 5.692 9 C 0.128 3.872 10 C 0.057 3.943 11 C -0.131 4.131 12 C -0.131 4.131 13 C -0.505 4.505 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.130 4.130 22 C -0.004 4.004 23 C -0.111 4.111 24 C -0.092 4.092 25 C -0.128 4.128 26 C -0.069 4.069 27 C -0.103 4.103 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.408 0.592 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.007 0.993 35 H 0.086 0.914 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.086 0.914 39 H 0.007 0.993 40 H 0.260 0.740 41 H 0.154 0.846 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.354 -13.391 0.005 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.208 6.208 3 C 0.168 3.832 4 N -0.257 5.257 5 C -0.016 4.016 6 C 0.341 3.659 7 O -0.423 6.423 8 N -0.342 5.342 9 C 0.006 3.994 10 C 0.056 3.944 11 C -0.189 4.189 12 C -0.189 4.189 13 C -0.544 4.544 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.152 4.152 22 C -0.009 4.009 23 C -0.129 4.129 24 C -0.111 4.111 25 C -0.147 4.147 26 C -0.089 4.089 27 C -0.106 4.106 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.245 0.755 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.026 0.974 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.026 0.974 40 H 0.070 0.930 41 H 0.172 0.828 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 18.614 -12.861 0.012 22.625 hybrid contribution -0.274 0.486 -0.011 0.558 sum 18.340 -12.375 0.001 22.125 Atomic orbital electron populations 1.23013 0.76090 1.03429 1.03460 1.86146 1.23711 1.23931 1.86972 1.19807 0.88028 0.84902 0.90436 1.67038 1.40765 0.97930 1.19945 1.20695 0.92127 0.90005 0.98732 1.17835 0.82929 0.87047 0.78044 1.90762 1.75269 1.24710 1.51602 1.46206 1.04999 1.12217 1.70765 1.21828 0.91169 0.85690 1.00714 1.18351 0.87977 0.95159 0.92912 1.21833 1.02969 0.96562 0.97523 1.21830 1.02974 0.96560 0.97522 1.20984 0.90717 0.91874 1.50819 0.92401 1.24878 0.97977 0.95842 0.94807 1.69808 1.11342 1.20690 1.50610 0.86569 0.80012 0.83187 0.78090 1.20725 1.21285 1.19907 1.22009 0.92700 0.99475 1.01028 1.17962 0.94281 0.91387 0.97245 1.20989 0.91561 0.99608 1.00724 1.21029 1.00402 0.92317 0.97385 1.20949 0.94732 0.97885 1.01092 1.20971 0.93602 0.97751 0.96539 1.18074 0.90768 0.94713 1.07026 0.88211 0.91586 0.91581 0.75524 0.92412 0.92418 0.97419 0.89567 0.95455 0.95450 0.89562 0.97414 0.93026 0.82806 0.84518 0.85335 0.85391 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.39 101.05 1.05 1.41 16 2 O -0.30 -3.57 9.74 -18.20 -0.18 -3.75 16 3 C 0.36 4.88 7.54 -16.56 -0.12 4.76 16 4 N -0.53 -8.08 8.32 -9.60 -0.08 -8.16 16 5 C 0.11 1.78 6.73 -83.09 -0.56 1.22 16 6 C 0.56 10.64 7.80 -12.29 -0.10 10.54 16 7 O -0.54 -11.62 16.27 5.32 0.09 -11.53 16 8 N -0.69 -13.47 4.95 -61.22 -0.30 -13.77 16 9 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 10 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 11 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 12 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 13 C -0.51 -13.33 8.01 -34.44 -0.28 -13.60 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 16 N -0.89 -23.69 9.35 55.43 0.52 -23.17 16 17 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.13 -1.81 9.41 -38.64 -0.36 -2.18 16 22 C 0.00 -0.05 5.74 -106.84 -0.61 -0.66 16 23 C -0.11 -1.00 9.81 -39.52 -0.39 -1.39 16 24 C -0.09 -0.68 9.95 -39.90 -0.40 -1.07 16 25 C -0.13 -0.96 9.95 -39.88 -0.40 -1.36 16 26 C -0.07 -0.65 9.58 -39.58 -0.38 -1.03 16 27 C -0.10 -1.25 5.76 -106.67 -0.61 -1.86 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 30 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 31 H 0.41 7.59 5.46 -40.82 -0.22 7.36 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 35 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 39 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 40 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.15 2.01 7.59 -52.48 -0.40 1.61 16 42 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 45 H 0.14 1.08 7.65 -52.48 -0.40 0.68 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -29.73 370.18 -8.28 -38.00 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.13 Total: 6.00 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.75 Total: -4.97 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.14 Total: -45.11 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.09 Total: -15.28 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.73 -8.28 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.823 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds