Wall clock time and date at job start Tue Mar 31 2020 16:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35501 * 117.00436 * 2 1 4 4 N 1.31389 * 119.94504 * 0.02562 * 3 2 1 5 5 C 1.33673 * 122.57203 * 180.02562 * 4 3 2 6 6 C 1.47923 * 119.24535 * 179.97438 * 5 4 3 7 7 O 1.21554 * 120.00066 * 179.97438 * 6 5 4 8 8 N 1.34780 * 119.99837 * 359.97438 * 6 5 4 9 9 C 1.46503 * 119.99658 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46746 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.47004 * 300.00116 * 10 9 8 12 12 C 1.52999 * 109.47118 * 60.00175 * 10 9 8 13 13 C 1.50693 * 109.46885 * 180.02562 * 10 9 8 14 14 H 1.08004 * 120.00504 * 359.97438 * 13 10 9 15 15 C 1.37881 * 119.99831 * 180.02562 * 13 10 9 16 16 N 1.31512 * 120.00093 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 120.00061 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47210 * 89.99453 * 17 15 13 19 19 H 1.48491 * 109.47203 * 209.99644 * 17 15 13 20 20 H 1.48497 * 109.47185 * 329.99973 * 17 15 13 21 21 C 1.38266 * 121.51224 * 359.95663 * 5 4 3 22 22 C 1.40695 * 118.65043 * 0.02562 * 21 5 4 23 23 C 1.40241 * 122.04898 * 179.97438 * 22 21 5 24 24 C 1.36315 * 119.47907 * 180.02562 * 23 22 21 25 25 C 1.39252 * 120.93946 * 0.04794 * 24 23 22 26 26 C 1.36359 * 121.06217 * 359.95227 * 25 24 23 27 27 C 1.40038 * 119.59074 * 0.02562 * 26 25 24 28 28 H 1.08993 * 109.46995 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46968 * 300.00221 * 1 2 3 30 30 H 1.08999 * 109.47080 * 59.99783 * 1 2 3 31 31 H 0.96997 * 119.99537 * 359.97438 * 8 6 5 32 32 H 1.08995 * 109.47289 * 300.00193 * 9 8 6 33 33 H 1.09000 * 109.46872 * 59.99987 * 9 8 6 34 34 H 1.08992 * 109.47171 * 60.00047 * 11 10 9 35 35 H 1.08997 * 109.46622 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.46984 * 299.99897 * 11 10 9 37 37 H 1.08990 * 109.47344 * 60.00041 * 12 10 9 38 38 H 1.09006 * 109.46946 * 180.02562 * 12 10 9 39 39 H 1.09002 * 109.46628 * 299.99698 * 12 10 9 40 40 H 0.97008 * 119.99972 * 180.02562 * 16 15 13 41 41 H 1.08004 * 120.67433 * 180.30240 * 21 5 4 42 42 H 1.07997 * 120.26477 * 0.02562 * 23 22 21 43 43 H 1.07993 * 119.53150 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.46464 * 179.97438 * 25 24 23 45 45 H 1.08008 * 120.20316 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.3277 2.3086 0.0005 5 6 1.8794 3.5261 0.0000 6 6 1.0021 4.7171 0.0001 7 8 1.4891 5.8308 0.0001 8 7 -0.3374 4.5673 0.0001 9 6 -1.2063 5.7469 0.0007 10 6 -2.6701 5.3019 -0.0001 11 6 -2.9479 4.4644 -1.2501 12 6 -2.9487 4.4626 1.2485 13 6 -3.5639 6.5152 -0.0001 14 1 -3.1312 7.5048 0.0009 15 6 -4.9342 6.3620 -0.0002 16 7 -5.4611 5.1571 -0.0008 17 14 -6.0421 7.8660 0.0005 18 1 -6.3356 8.2653 -1.3994 19 1 -7.3119 7.5450 0.7003 20 1 -5.3596 8.9833 0.7011 21 6 3.2513 3.6979 -0.0001 22 6 4.0741 2.5565 -0.0004 23 6 5.4735 2.6479 -0.0011 24 6 6.2202 1.5075 -0.0018 25 6 5.6131 0.2542 -0.0028 26 6 4.2552 0.1302 -0.0022 27 6 3.4558 1.2801 -0.0010 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.7260 3.6786 -0.0003 32 1 -1.0080 6.3438 0.8909 33 1 -1.0081 6.3446 -0.8890 34 1 -2.3015 3.5869 -1.2505 35 1 -3.9907 4.1471 -1.2503 36 1 -2.7495 5.0624 -2.1396 37 1 -2.7508 5.0592 2.1389 38 1 -3.9916 4.1452 1.2477 39 1 -2.3022 3.5851 1.2479 40 1 -6.4252 5.0493 -0.0013 41 1 3.6827 4.6880 0.0044 42 1 5.9558 3.6142 -0.0011 43 1 7.2979 1.5769 -0.0019 44 1 6.2278 -0.6338 -0.0038 45 1 3.7990 -0.8488 -0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457990711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:16 Heat of formation + Delta-G solvation = -42.337190 kcal Electronic energy + Delta-G solvation = -27616.737084 eV Core-core repulsion = 23791.640913 eV Total energy + Delta-G solvation = -3825.096171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.26109 -40.70904 -39.63672 -38.30738 -37.65095 -35.07902 -33.51839 -32.94048 -32.21979 -30.66238 -28.38634 -27.62522 -27.60848 -27.07718 -25.10928 -24.71806 -23.05214 -22.14960 -20.65996 -19.83528 -19.19142 -18.35001 -17.85222 -17.52963 -17.22499 -16.71133 -16.63016 -16.48185 -16.34277 -15.70178 -15.12540 -14.96115 -14.92979 -14.76779 -14.69794 -14.42142 -14.10307 -13.98451 -13.27071 -13.12620 -13.11522 -12.91095 -12.77852 -12.71363 -12.60834 -12.30987 -12.21896 -12.15455 -12.10311 -11.60378 -11.52471 -11.26758 -10.83472 -10.76132 -10.67001 -10.41670 -10.18251 -10.01544 -8.91501 -8.03135 -6.19254 -0.79153 -0.36756 0.81573 1.40912 1.42723 1.45123 1.53753 1.86501 2.14586 2.28063 2.46929 2.98562 2.99284 3.20411 3.53773 3.70142 3.75656 3.94518 4.12584 4.29565 4.34434 4.39230 4.42932 4.45396 4.46278 4.63878 4.67815 4.68769 4.77349 4.89909 4.93929 5.01625 5.03970 5.08805 5.15076 5.27114 5.30265 5.41166 5.46677 5.50824 5.62930 5.65615 5.86133 6.02144 6.09477 6.17338 6.40438 6.41007 6.71077 6.84184 7.13665 7.48345 8.96305 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023348 B = 0.002772 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.951598 B =10097.484605 C =11100.071609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.300 6.300 3 C 0.353 3.647 4 N -0.549 5.549 5 C 0.074 3.926 6 C 0.559 3.441 7 O -0.575 6.575 8 N -0.692 5.692 9 C 0.143 3.857 10 C 0.053 3.947 11 C -0.119 4.119 12 C -0.119 4.119 13 C -0.528 4.528 14 H 0.047 0.953 15 C 0.028 3.972 16 N -0.900 5.900 17 Si 0.948 3.052 18 H -0.279 1.279 19 H -0.282 1.282 20 H -0.275 1.275 21 C -0.118 4.118 22 C -0.025 4.025 23 C -0.116 4.116 24 C -0.081 4.081 25 C -0.109 4.109 26 C -0.083 4.083 27 C -0.112 4.112 28 H 0.132 0.868 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.412 0.588 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.029 0.971 35 H 0.066 0.934 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.066 0.934 39 H 0.029 0.971 40 H 0.261 0.739 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.167 0.833 44 H 0.165 0.835 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.129 -15.429 -0.001 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.204 6.204 3 C 0.159 3.841 4 N -0.278 5.278 5 C -0.049 4.049 6 C 0.345 3.655 7 O -0.456 6.456 8 N -0.341 5.341 9 C 0.020 3.980 10 C 0.052 3.948 11 C -0.177 4.177 12 C -0.177 4.177 13 C -0.567 4.567 14 H 0.065 0.935 15 C -0.172 4.172 16 N -0.539 5.539 17 Si 0.775 3.225 18 H -0.204 1.204 19 H -0.208 1.208 20 H -0.200 1.200 21 C -0.140 4.140 22 C -0.029 4.029 23 C -0.133 4.133 24 C -0.100 4.100 25 C -0.127 4.127 26 C -0.102 4.102 27 C -0.115 4.115 28 H 0.150 0.850 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.250 0.750 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.184 0.816 44 H 0.182 0.818 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 21.391 -14.915 0.005 26.077 hybrid contribution -0.911 0.970 -0.010 1.331 sum 20.480 -13.945 -0.005 24.777 Atomic orbital electron populations 1.23158 0.75450 1.05223 1.02410 1.86158 1.24333 1.23086 1.86871 1.20096 0.88902 0.84765 0.90383 1.66858 1.41523 0.98064 1.21323 1.20209 0.92270 0.89360 1.03082 1.18277 0.82758 0.87821 0.76640 1.90722 1.75707 1.26241 1.52957 1.46042 1.05208 1.11456 1.71410 1.21438 0.90772 0.86324 0.99460 1.18344 0.88479 0.94584 0.93359 1.21665 1.02056 0.97112 0.96891 1.21663 1.02060 0.97112 0.96892 1.21248 0.91646 0.92378 1.51423 0.93462 1.25479 0.98988 0.98150 0.94574 1.69912 1.11531 1.21826 1.50590 0.85712 0.78431 0.80368 0.78016 1.20444 1.20772 1.20006 1.22129 0.92088 1.00460 0.99298 1.18162 0.95602 0.90623 0.98499 1.21298 0.90193 1.01545 1.00303 1.21521 1.02256 0.91435 0.94771 1.21455 0.94178 0.99437 0.97633 1.21205 0.94465 0.97332 0.97241 1.18342 0.90420 0.95846 1.06883 0.84978 0.92639 0.92632 0.75029 0.93714 0.93702 0.95235 0.91554 0.96195 0.96182 0.91550 0.95230 0.92965 0.82682 0.82626 0.81569 0.81769 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.39 113.37 1.18 1.82 16 2 O -0.30 -6.85 9.74 -88.02 -0.86 -7.70 16 3 C 0.35 9.44 7.54 85.52 0.65 10.08 16 4 N -0.55 -17.19 8.32 -297.67 -2.48 -19.66 16 5 C 0.07 2.49 6.73 41.44 0.28 2.77 16 6 C 0.56 22.22 7.80 86.81 0.68 22.89 16 7 O -0.58 -25.60 16.27 -3.89 -0.06 -25.66 16 8 N -0.69 -27.86 4.95 -465.88 -2.30 -30.16 16 9 C 0.14 6.52 4.50 86.38 0.39 6.91 16 10 C 0.05 2.57 0.50 -52.93 -0.03 2.54 16 11 C -0.12 -5.61 8.08 71.98 0.58 -5.02 16 12 C -0.12 -5.61 8.08 71.98 0.58 -5.02 16 13 C -0.53 -28.56 8.01 25.60 0.21 -28.36 16 14 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 15 C 0.03 1.49 5.15 84.66 0.44 1.92 16 16 N -0.90 -48.72 9.35 21.45 0.20 -48.51 16 17 Si 0.95 43.12 29.54 68.60 2.03 45.14 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 C -0.12 -3.30 9.41 22.88 0.22 -3.09 16 22 C -0.02 -0.56 5.74 -21.30 -0.12 -0.68 16 23 C -0.12 -1.73 9.81 22.31 0.22 -1.51 16 24 C -0.08 -0.79 9.95 22.07 0.22 -0.57 16 25 C -0.11 -1.10 9.95 22.08 0.22 -0.88 16 26 C -0.08 -1.30 9.58 22.27 0.21 -1.09 16 27 C -0.11 -2.56 5.76 -21.19 -0.12 -2.68 16 28 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.22 8.11 -2.39 -0.02 1.20 16 30 H 0.05 1.22 8.11 -2.39 -0.02 1.20 16 31 H 0.41 15.73 5.46 -92.71 -0.51 15.23 16 32 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 35 H 0.07 3.39 6.07 -2.39 -0.01 3.38 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 3.39 6.07 -2.38 -0.01 3.38 16 39 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 40 H 0.26 13.54 8.31 -92.70 -0.77 12.77 16 41 H 0.16 4.13 7.59 -2.91 -0.02 4.11 16 42 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.17 0.46 8.06 -2.91 -0.02 0.43 16 44 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 45 H 0.15 1.92 7.65 -2.91 -0.02 1.89 16 Total: -1.00 -66.36 370.18 2.82 -63.53 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.51 Total: 23.01 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.79 Total: 0.02 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -4.58 Total: -98.34 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.92 Total: -33.37 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -66.36 2.82 -63.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.196 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds