Wall clock time and date at job start Tue Mar 31 2020 16:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47701 * 2 1 4 4 C 1.50696 * 109.47053 * 239.99541 * 2 1 3 5 5 H 1.07999 * 120.00202 * 240.00946 * 4 2 1 6 6 C 1.37884 * 119.99746 * 60.00470 * 4 2 1 7 7 N 1.31514 * 119.99981 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99781 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47109 * 90.00314 * 8 6 4 10 10 H 1.48507 * 109.46754 * 210.00053 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99884 * 8 6 4 12 12 C 1.53002 * 109.46673 * 120.00106 * 2 1 3 13 13 N 1.46496 * 109.47425 * 299.99796 * 12 2 1 14 14 C 1.34777 * 120.00266 * 180.02562 * 13 12 2 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 12 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 12 17 17 O 1.42906 * 109.46699 * 179.97438 * 16 14 13 18 18 C 1.35843 * 116.99812 * 179.97438 * 17 16 14 19 19 C 1.36601 * 120.18069 * 359.73117 * 18 17 16 20 20 C 1.39195 * 120.99993 * 179.80604 * 19 18 17 21 21 C 1.36198 * 120.94281 * 0.44812 * 20 19 18 22 22 C 1.40415 * 119.72978 * 359.79246 * 21 20 19 23 23 C 1.40785 * 121.37147 * 179.97438 * 22 21 20 24 24 C 1.36571 * 118.14655 * 180.02562 * 23 22 21 25 25 C 1.39342 * 119.92790 * 359.97438 * 24 23 22 26 26 N 1.31081 * 121.73973 * 0.02562 * 25 24 23 27 27 C 1.33607 * 121.32623 * 359.95955 * 26 25 24 28 28 H 1.09002 * 109.46994 * 300.00314 * 1 2 3 29 29 H 1.08998 * 109.46752 * 59.99368 * 1 2 3 30 30 H 1.08996 * 109.47966 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46952 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.09002 * 109.46695 * 59.99509 * 3 2 1 34 34 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.46930 * 179.97438 * 12 2 1 36 36 H 1.09000 * 109.47312 * 59.99561 * 12 2 1 37 37 H 0.96999 * 119.99691 * 359.97438 * 13 12 2 38 38 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 39 39 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 40 40 H 1.07999 * 119.49902 * 359.97438 * 19 18 17 41 41 H 1.08006 * 119.52670 * 180.21966 * 20 19 18 42 42 H 1.08003 * 120.13774 * 179.81225 * 21 20 19 43 43 H 1.08000 * 120.93019 * 359.97438 * 23 22 21 44 44 H 1.07995 * 120.03600 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.12882 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3426 -2.1617 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6292 -1.7586 -3.7121 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8775 -0.4909 3.6696 15 8 2.5791 -1.4738 3.7809 16 6 1.3756 0.2199 4.9000 17 8 1.8518 -0.4539 6.0668 18 6 1.4876 0.0629 7.2692 19 6 0.7051 1.1811 7.3274 20 6 0.3186 1.7227 8.5500 21 6 0.7173 1.1580 9.7235 22 6 1.5263 0.0105 9.7047 23 6 1.9588 -0.6011 10.8967 24 6 2.7442 -1.7143 10.8016 25 6 3.0944 -2.2129 9.5485 26 7 2.6897 -1.6406 8.4408 27 6 1.9193 -0.5493 8.4642 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7097 1.1618 -3.4844 35 1 3.1299 -0.7217 1.2491 36 1 1.6765 -1.7489 1.2493 37 1 0.9943 0.7582 2.3564 38 1 1.7391 1.2475 4.8996 39 1 0.2856 0.2200 4.9003 40 1 0.3793 1.6504 6.4110 41 1 -0.3034 2.6055 8.5683 42 1 0.4122 1.5908 10.6648 43 1 1.6780 -0.2006 11.8596 44 1 3.0934 -2.2076 11.6966 45 1 3.7164 -3.0938 9.4882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458012572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:10 Heat of formation + Delta-G solvation = -18.435493 kcal Electronic energy + Delta-G solvation = -26721.402610 eV Core-core repulsion = 22897.342894 eV Total energy + Delta-G solvation = -3824.059716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.29092 -39.75202 -38.57371 -36.75437 -36.26219 -33.35634 -33.32632 -31.12165 -30.86461 -29.81149 -28.40131 -25.76223 -25.56351 -24.83503 -24.34454 -23.79953 -22.06840 -20.41729 -18.92650 -18.50951 -18.42219 -17.34119 -16.73187 -16.44962 -16.31483 -15.81311 -15.15033 -14.87200 -14.80471 -14.76192 -14.42795 -14.04617 -13.93745 -13.40405 -13.27530 -12.96862 -12.83063 -12.55994 -12.26838 -12.22292 -12.04223 -11.50782 -11.42065 -11.34885 -11.21552 -10.88168 -10.70975 -10.41999 -10.33668 -10.22105 -9.70323 -9.67141 -9.59326 -9.28799 -9.12616 -8.81894 -8.51103 -8.35957 -8.04238 -6.04283 -4.14177 0.21140 0.49595 1.74544 2.57200 2.67551 2.90241 3.27720 3.34727 3.39036 3.79786 3.84383 4.00171 4.38561 4.39478 4.50500 4.61303 4.63060 4.68193 4.88136 4.96538 4.98439 4.98645 5.05945 5.22716 5.29727 5.51850 5.68322 5.71578 5.92347 6.10199 6.17151 6.20693 6.29224 6.44347 6.47127 6.72930 6.78013 6.87704 6.94397 6.98455 7.06167 7.31963 7.52280 7.67316 7.74599 7.94480 7.97982 8.11429 8.35570 8.59414 8.86413 9.51744 10.97193 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029410 B = 0.002102 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.828966 B =13316.580137 C =14072.037459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.134 3.866 13 N -0.713 5.713 14 C 0.506 3.494 15 O -0.523 6.523 16 C 0.034 3.966 17 O -0.263 6.263 18 C 0.169 3.831 19 C -0.221 4.221 20 C -0.066 4.066 21 C -0.147 4.147 22 C -0.066 4.066 23 C -0.072 4.072 24 C -0.161 4.161 25 C 0.114 3.886 26 N -0.441 5.441 27 C 0.107 3.893 28 H 0.006 0.994 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.006 0.994 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.398 0.602 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 3.519 26.194 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.012 3.988 13 N -0.366 5.366 14 C 0.289 3.711 15 O -0.399 6.399 16 C -0.045 4.045 17 O -0.173 6.173 18 C 0.121 3.879 19 C -0.242 4.242 20 C -0.084 4.084 21 C -0.165 4.165 22 C -0.069 4.069 23 C -0.098 4.098 24 C -0.181 4.181 25 C -0.059 4.059 26 N -0.148 5.148 27 C -0.016 4.016 28 H 0.025 0.975 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.234 0.766 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.723 2.458 25.148 25.326 hybrid contribution -0.374 0.505 -0.125 0.641 sum -2.096 2.963 25.023 25.285 Atomic orbital electron populations 1.21840 0.97710 0.99264 1.00097 1.18374 0.92844 0.92808 0.90494 1.21838 0.98673 0.98292 1.00097 1.20975 1.31513 1.12107 0.89812 0.92376 1.24883 0.94865 0.94920 0.98883 1.69797 1.36719 1.22700 1.23257 0.86558 0.79353 0.79379 0.82517 1.20700 1.21269 1.19880 1.21777 0.98337 0.95855 0.82862 1.46162 1.52998 1.32008 1.05393 1.19845 0.81786 0.85252 0.84167 1.90745 1.36830 1.25881 1.86432 1.22690 1.00419 0.97091 0.84293 1.86310 1.69009 1.51307 1.10656 1.18599 0.92944 0.91654 0.84686 1.20948 1.04666 0.98493 1.00084 1.20639 0.97520 0.98898 0.91386 1.20806 1.00576 0.96284 0.98880 1.18602 0.98624 0.96695 0.92935 1.21397 0.95935 0.95012 0.97460 1.21974 0.99156 0.97384 0.99594 1.23020 0.96807 0.98757 0.87347 1.68089 1.08320 1.07154 1.31241 1.18147 0.98829 0.94351 0.90230 0.97515 0.89538 0.95360 0.95357 0.89526 0.97522 0.92991 0.92468 0.92482 0.76633 0.88929 0.88947 0.84522 0.85191 0.85177 0.84179 0.84416 0.82224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.51 -13.13 8.01 -34.44 -0.28 -13.40 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.34 9.35 55.43 0.52 -22.82 16 8 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.13 2.81 4.50 -4.04 -0.02 2.80 16 13 N -0.71 -12.32 4.96 -60.29 -0.30 -12.62 16 14 C 0.51 8.93 7.91 -10.98 -0.09 8.85 16 15 O -0.52 -11.73 16.50 -14.35 -0.24 -11.97 16 16 C 0.03 0.44 5.22 36.01 0.19 0.63 16 17 O -0.26 -4.23 9.46 -39.16 -0.37 -4.60 16 18 C 0.17 2.31 6.71 -39.11 -0.26 2.05 16 19 C -0.22 -2.26 8.98 -39.82 -0.36 -2.62 16 20 C -0.07 -0.55 9.95 -39.96 -0.40 -0.95 16 21 C -0.15 -1.23 9.77 -39.50 -0.39 -1.61 16 22 C -0.07 -0.70 5.74 -106.81 -0.61 -1.31 16 23 C -0.07 -0.57 9.90 -39.22 -0.39 -0.96 16 24 C -0.16 -1.23 10.03 -39.77 -0.40 -1.63 16 25 C 0.11 1.18 11.15 -17.46 -0.19 0.98 16 26 N -0.44 -6.44 10.13 -10.88 -0.11 -6.55 16 27 C 0.11 1.47 6.62 -84.73 -0.56 0.91 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 29 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 33 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 34 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.40 5.92 6.16 -40.82 -0.25 5.67 16 38 H 0.09 0.94 7.64 -51.93 -0.40 0.55 16 39 H 0.09 0.94 7.67 -51.93 -0.40 0.54 16 40 H 0.14 1.09 6.20 -52.49 -0.33 0.76 16 41 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 42 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 43 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -33.03 369.98 -9.33 -42.36 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.06 Total: 3.61 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -3.32 Total: -8.63 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.11 Total: -41.99 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.61 Total: -16.57 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.03 -9.33 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458012572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.922 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds