Wall clock time and date at job start Tue Mar 31 2020 16:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37811 * 118.95336 * 2 1 4 4 C 1.47462 * 118.96867 * 0.02562 * 3 2 1 5 5 O 1.21592 * 120.00553 * 354.51866 * 4 3 2 6 6 N 1.34782 * 119.99587 * 174.51229 * 4 3 2 7 7 C 1.46498 * 119.99755 * 179.72679 * 6 4 3 8 8 C 1.52996 * 109.47144 * 180.27852 * 7 6 4 9 9 C 1.53005 * 109.46993 * 299.99827 * 8 7 6 10 10 C 1.52997 * 109.47204 * 60.00011 * 8 7 6 11 11 C 1.50708 * 109.47404 * 179.97438 * 8 7 6 12 12 H 1.08001 * 119.99594 * 359.97438 * 11 8 7 13 13 C 1.37870 * 119.99964 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00497 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99907 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47463 * 59.99696 * 15 13 11 17 17 H 1.48494 * 109.47475 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47191 * 299.99991 * 15 13 11 19 19 C 1.35612 * 122.05653 * 180.29774 * 3 2 1 20 20 C 1.46281 * 119.40513 * 359.47243 * 19 3 2 21 21 C 1.39607 * 121.79035 * 180.19287 * 20 19 3 22 22 C 1.37790 * 119.54894 * 180.25915 * 21 20 19 23 23 C 1.38827 * 120.69443 * 0.04038 * 22 21 20 24 24 C 1.37896 * 120.73213 * 0.02562 * 23 22 21 25 25 C 1.39290 * 119.60169 * 359.97438 * 24 23 22 26 26 C 1.34743 * 118.95695 * 180.02562 * 2 1 3 27 27 O 1.21745 * 120.27737 * 359.95439 * 26 2 1 28 28 H 1.09000 * 109.46961 * 64.74028 * 1 2 3 29 29 H 1.08998 * 109.46880 * 184.73863 * 1 2 3 30 30 H 1.08997 * 109.47161 * 304.73701 * 1 2 3 31 31 H 0.97000 * 119.99967 * 0.02562 * 6 4 3 32 32 H 1.09005 * 109.47407 * 300.27490 * 7 6 4 33 33 H 1.08998 * 109.47401 * 60.27875 * 7 6 4 34 34 H 1.08998 * 109.46974 * 60.00203 * 9 8 7 35 35 H 1.09004 * 109.46981 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.47208 * 299.99766 * 9 8 7 37 37 H 1.08999 * 109.47672 * 60.00469 * 10 8 7 38 38 H 1.09010 * 109.47294 * 180.02562 * 10 8 7 39 39 H 1.08998 * 109.47171 * 300.00046 * 10 8 7 40 40 H 0.97003 * 120.00475 * 180.02562 * 14 13 11 41 41 H 1.08007 * 120.29645 * 179.71977 * 19 3 2 42 42 H 1.08001 * 120.22703 * 0.25874 * 21 20 19 43 43 H 1.08000 * 119.65352 * 180.02562 * 22 21 20 44 44 H 1.07989 * 119.63491 * 179.97438 * 23 22 21 45 45 H 1.07998 * 120.19648 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1321 1.2059 0.0000 4 6 1.3490 2.4554 0.0006 5 8 0.1379 2.4140 -0.0995 6 7 1.9758 3.6434 0.1122 7 6 1.1983 4.8850 0.1068 8 6 2.1446 6.0799 0.2390 9 6 2.9229 5.9712 1.5518 10 6 3.1247 6.0867 -0.9359 11 6 1.3449 7.3573 0.2327 12 1 0.2693 7.3204 0.1430 13 6 1.9865 8.5727 0.3416 14 7 3.2962 8.6175 0.4513 15 14 0.9952 10.1560 0.3346 16 1 0.0435 10.1493 1.4745 17 1 1.9136 11.3157 0.4640 18 1 0.2402 10.2617 -0.9398 19 6 3.4863 1.2793 -0.0060 20 6 4.2724 0.0457 -0.0009 21 6 5.6684 0.0632 -0.0027 22 6 6.3629 -1.1268 -0.0032 23 6 5.6891 -2.3406 -0.0027 24 6 4.3107 -2.3814 -0.0023 25 6 3.5872 -1.1912 -0.0019 26 6 2.1174 -1.1790 -0.0005 27 8 1.4946 -2.2251 -0.0002 28 1 -0.3633 0.4385 -0.9294 29 1 -0.3633 -1.0241 0.0849 30 1 -0.3633 0.5856 0.8445 31 1 2.9419 3.6764 0.1918 32 1 0.6438 4.9625 -0.8285 33 1 0.5001 4.8802 0.9438 34 1 3.5014 5.0474 1.5558 35 1 3.5968 6.8228 1.6462 36 1 2.2247 5.9664 2.3888 37 1 2.5703 6.1641 -1.8712 38 1 3.7992 6.9378 -0.8415 39 1 3.7031 5.1629 -0.9319 40 1 3.7476 9.4727 0.5283 41 1 3.9798 2.2400 -0.0104 42 1 6.2004 1.0032 -0.0037 43 1 7.4429 -1.1152 -0.0041 44 1 6.2506 -3.2630 -0.0035 45 1 3.7954 -3.3305 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458013247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:20 Heat of formation + Delta-G solvation = -24.898838 kcal Electronic energy + Delta-G solvation = -27797.400346 eV Core-core repulsion = 23973.060358 eV Total energy + Delta-G solvation = -3824.339988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.51361 -39.59008 -38.56287 -36.93088 -36.21698 -34.03747 -32.80525 -31.56011 -31.17308 -29.70269 -27.40006 -25.88566 -25.83546 -25.28777 -24.30974 -23.43716 -21.94603 -21.03746 -19.06258 -18.72914 -18.08931 -17.53630 -16.35258 -16.27821 -15.88785 -15.53756 -15.31611 -14.88787 -14.82169 -14.76485 -14.50345 -13.90414 -13.57134 -13.46447 -13.13387 -13.05008 -12.95887 -12.64318 -12.41838 -12.19979 -12.02590 -11.52599 -11.45831 -11.42268 -11.28692 -10.93047 -10.79874 -10.49557 -10.36853 -10.27574 -9.76058 -9.71785 -9.70249 -9.41459 -9.32722 -8.90677 -8.68935 -8.44372 -7.94017 -6.10170 -4.20771 0.26483 0.60455 1.65953 2.38853 2.53178 3.14511 3.25217 3.29136 3.30075 3.35963 3.75641 4.11092 4.28764 4.35130 4.47448 4.62792 4.84135 4.97576 4.99116 5.17000 5.25364 5.35293 5.46970 5.52250 5.55353 5.68193 5.89055 5.98359 6.03047 6.06497 6.13714 6.16534 6.21024 6.37310 6.54992 6.56296 6.69982 6.74696 6.81039 6.90015 6.94385 7.23563 7.44822 7.59798 7.67900 7.74283 7.90874 8.02441 8.23255 8.32855 8.79265 9.45690 10.91271 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.002905 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.691928 B = 9635.896505 C =10874.445689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.504 5.504 3 C 0.113 3.887 4 C 0.543 3.457 5 O -0.534 6.534 6 N -0.696 5.696 7 C 0.131 3.869 8 C 0.057 3.943 9 C -0.133 4.133 10 C -0.132 4.132 11 C -0.509 4.509 12 H 0.058 0.942 13 C 0.068 3.932 14 N -0.885 5.885 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.157 4.157 20 C -0.001 4.001 21 C -0.117 4.117 22 C -0.086 4.086 23 C -0.135 4.135 24 C -0.051 4.051 25 C -0.144 4.144 26 C 0.547 3.453 27 O -0.528 6.528 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.401 0.599 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.006 0.994 35 H 0.087 0.913 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.087 0.913 39 H 0.005 0.995 40 H 0.261 0.739 41 H 0.154 0.846 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.826 -16.963 -0.580 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.219 5.219 3 C 0.008 3.992 4 C 0.327 3.673 5 O -0.413 6.413 6 N -0.347 5.347 7 C 0.009 3.991 8 C 0.056 3.944 9 C -0.190 4.190 10 C -0.190 4.190 11 C -0.547 4.547 12 H 0.076 0.924 13 C -0.134 4.134 14 N -0.523 5.523 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.183 4.183 20 C -0.002 4.002 21 C -0.135 4.135 22 C -0.104 4.104 23 C -0.153 4.153 24 C -0.070 4.070 25 C -0.147 4.147 26 C 0.342 3.658 27 O -0.407 6.407 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.238 0.762 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.025 0.975 35 H 0.106 0.894 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.106 0.894 39 H 0.024 0.976 40 H 0.072 0.928 41 H 0.172 0.828 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.637 -17.440 -0.626 18.339 hybrid contribution 0.021 1.033 0.027 1.033 sum 5.658 -16.407 -0.599 17.366 Atomic orbital electron populations 1.22267 0.75906 1.03658 1.05084 1.44977 1.09618 1.04134 1.63201 1.19881 0.92195 0.86600 1.00483 1.17810 0.87344 0.83328 0.78795 1.90812 1.13320 1.86930 1.50211 1.46264 1.11637 1.05819 1.70993 1.21896 0.94770 0.81348 1.01097 1.18371 0.92225 0.90900 0.92914 1.21857 1.00035 0.99514 0.97624 1.21856 0.99848 0.99646 0.97657 1.20912 0.93187 0.89802 1.50847 0.92398 1.24862 0.94924 0.98945 0.94639 1.69777 1.07307 1.25503 1.49762 0.86620 0.79886 0.82585 0.78705 1.20256 1.21291 1.20248 1.21822 0.90734 0.98287 1.07408 1.18980 0.93738 0.91478 0.96038 1.21215 0.92174 0.99140 1.00961 1.21333 1.00409 0.92167 0.96531 1.21208 0.93865 0.98415 1.01826 1.21066 0.93811 0.97266 0.94864 1.19903 0.92043 0.94374 1.08396 1.18151 0.87849 0.82621 0.77225 1.90835 1.68886 1.30101 1.50869 0.89840 0.89617 0.89498 0.76161 0.92056 0.92059 0.97534 0.89412 0.95287 0.95267 0.89421 0.97573 0.92842 0.82838 0.84437 0.85171 0.85207 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.99 8.86 59.85 0.53 1.52 16 2 N -0.50 -7.34 3.04 -120.92 -0.37 -7.70 16 3 C 0.11 1.59 6.63 -82.36 -0.55 1.04 16 4 C 0.54 8.67 7.66 -12.50 -0.10 8.57 16 5 O -0.53 -9.74 12.96 5.28 0.07 -9.67 16 6 N -0.70 -11.10 4.89 -61.37 -0.30 -11.40 16 7 C 0.13 2.52 4.50 -4.05 -0.02 2.50 16 8 C 0.06 1.21 0.50 -155.66 -0.08 1.14 16 9 C -0.13 -2.77 8.08 37.16 0.30 -2.47 16 10 C -0.13 -2.76 8.08 37.16 0.30 -2.46 16 11 C -0.51 -12.63 8.01 -34.44 -0.28 -12.90 16 12 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 13 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 14 N -0.89 -22.55 9.35 55.43 0.52 -22.03 16 15 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 C -0.16 -1.85 9.46 -37.29 -0.35 -2.20 16 20 C 0.00 -0.01 5.89 -104.95 -0.62 -0.63 16 21 C -0.12 -1.04 9.86 -39.23 -0.39 -1.43 16 22 C -0.09 -0.66 10.01 -39.53 -0.40 -1.05 16 23 C -0.13 -1.10 10.01 -39.49 -0.40 -1.49 16 24 C -0.05 -0.54 9.65 -39.32 -0.38 -0.92 16 25 C -0.14 -1.83 5.90 -104.76 -0.62 -2.45 16 26 C 0.55 8.14 7.63 -12.73 -0.10 8.04 16 27 O -0.53 -8.83 15.77 5.15 0.08 -8.75 16 28 H 0.08 1.17 7.30 -51.93 -0.38 0.79 16 29 H 0.09 1.13 6.83 -51.93 -0.35 0.78 16 30 H 0.09 1.23 6.96 -51.93 -0.36 0.87 16 31 H 0.40 5.65 4.08 -40.82 -0.17 5.49 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 35 H 0.09 2.06 6.07 -51.93 -0.32 1.74 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 2.05 6.07 -51.92 -0.32 1.73 16 39 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 40 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 41 H 0.15 1.49 6.24 -52.48 -0.33 1.16 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.14 1.37 7.77 -52.49 -0.41 0.96 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -28.50 360.59 -8.65 -37.15 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.84 Total: 5.56 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -3.22 Total: -3.57 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: -0.15 Total: -41.13 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.15 Total: -18.42 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.50 -8.65 -37.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458013247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.251 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds