Wall clock time and date at job start Tue Mar 31 2020 16:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37811 * 118.95336 * 2 1 4 4 C 1.47462 * 118.96867 * 0.02562 * 3 2 1 5 5 O 1.21592 * 120.00553 * 354.51866 * 4 3 2 6 6 N 1.34782 * 119.99587 * 174.51229 * 4 3 2 7 7 C 1.46498 * 119.99755 * 179.72679 * 6 4 3 8 8 C 1.52996 * 109.47144 * 180.27852 * 7 6 4 9 9 C 1.53005 * 109.46993 * 299.99827 * 8 7 6 10 10 C 1.52997 * 109.47204 * 60.00011 * 8 7 6 11 11 C 1.50708 * 109.47404 * 179.97438 * 8 7 6 12 12 H 1.08001 * 119.99594 * 359.97438 * 11 8 7 13 13 C 1.37870 * 119.99964 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00497 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99907 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47463 * 59.99696 * 15 13 11 17 17 H 1.48494 * 109.47475 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47191 * 299.99991 * 15 13 11 19 19 C 1.35612 * 122.05653 * 180.29774 * 3 2 1 20 20 C 1.46281 * 119.40513 * 359.47243 * 19 3 2 21 21 C 1.39607 * 121.79035 * 180.19287 * 20 19 3 22 22 C 1.37790 * 119.54894 * 180.25915 * 21 20 19 23 23 C 1.38827 * 120.69443 * 0.04038 * 22 21 20 24 24 C 1.37896 * 120.73213 * 0.02562 * 23 22 21 25 25 C 1.39290 * 119.60169 * 359.97438 * 24 23 22 26 26 C 1.34743 * 118.95695 * 180.02562 * 2 1 3 27 27 O 1.21745 * 120.27737 * 359.95439 * 26 2 1 28 28 H 1.09000 * 109.46961 * 64.74028 * 1 2 3 29 29 H 1.08998 * 109.46880 * 184.73863 * 1 2 3 30 30 H 1.08997 * 109.47161 * 304.73701 * 1 2 3 31 31 H 0.97000 * 119.99967 * 0.02562 * 6 4 3 32 32 H 1.09005 * 109.47407 * 300.27490 * 7 6 4 33 33 H 1.08998 * 109.47401 * 60.27875 * 7 6 4 34 34 H 1.08998 * 109.46974 * 60.00203 * 9 8 7 35 35 H 1.09004 * 109.46981 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.47208 * 299.99766 * 9 8 7 37 37 H 1.08999 * 109.47672 * 60.00469 * 10 8 7 38 38 H 1.09010 * 109.47294 * 180.02562 * 10 8 7 39 39 H 1.08998 * 109.47171 * 300.00046 * 10 8 7 40 40 H 0.97003 * 120.00475 * 180.02562 * 14 13 11 41 41 H 1.08007 * 120.29645 * 179.71977 * 19 3 2 42 42 H 1.08001 * 120.22703 * 0.25874 * 21 20 19 43 43 H 1.08000 * 119.65352 * 180.02562 * 22 21 20 44 44 H 1.07989 * 119.63491 * 179.97438 * 23 22 21 45 45 H 1.07998 * 120.19648 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1321 1.2059 0.0000 4 6 1.3490 2.4554 0.0006 5 8 0.1379 2.4140 -0.0995 6 7 1.9758 3.6434 0.1122 7 6 1.1983 4.8850 0.1068 8 6 2.1446 6.0799 0.2390 9 6 2.9229 5.9712 1.5518 10 6 3.1247 6.0867 -0.9359 11 6 1.3449 7.3573 0.2327 12 1 0.2693 7.3204 0.1430 13 6 1.9865 8.5727 0.3416 14 7 3.2962 8.6175 0.4513 15 14 0.9952 10.1560 0.3346 16 1 0.0435 10.1493 1.4745 17 1 1.9136 11.3157 0.4640 18 1 0.2402 10.2617 -0.9398 19 6 3.4863 1.2793 -0.0060 20 6 4.2724 0.0457 -0.0009 21 6 5.6684 0.0632 -0.0027 22 6 6.3629 -1.1268 -0.0032 23 6 5.6891 -2.3406 -0.0027 24 6 4.3107 -2.3814 -0.0023 25 6 3.5872 -1.1912 -0.0019 26 6 2.1174 -1.1790 -0.0005 27 8 1.4946 -2.2251 -0.0002 28 1 -0.3633 0.4385 -0.9294 29 1 -0.3633 -1.0241 0.0849 30 1 -0.3633 0.5856 0.8445 31 1 2.9419 3.6764 0.1918 32 1 0.6438 4.9625 -0.8285 33 1 0.5001 4.8802 0.9438 34 1 3.5014 5.0474 1.5558 35 1 3.5968 6.8228 1.6462 36 1 2.2247 5.9664 2.3888 37 1 2.5703 6.1641 -1.8712 38 1 3.7992 6.9378 -0.8415 39 1 3.7031 5.1629 -0.9319 40 1 3.7476 9.4727 0.5283 41 1 3.9798 2.2400 -0.0104 42 1 6.2004 1.0032 -0.0037 43 1 7.4429 -1.1152 -0.0041 44 1 6.2506 -3.2630 -0.0035 45 1 3.7954 -3.3305 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458013247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:19 Heat of formation + Delta-G solvation = -40.121836 kcal Electronic energy + Delta-G solvation = -27798.060465 eV Core-core repulsion = 23973.060358 eV Total energy + Delta-G solvation = -3825.000106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.54766 -40.81137 -39.43520 -38.37085 -37.47418 -35.44386 -33.96165 -32.77658 -32.31803 -30.78566 -28.43481 -27.52027 -27.45124 -26.88186 -25.46473 -24.33009 -22.78138 -22.30501 -20.65609 -19.73620 -19.22825 -18.55292 -17.83239 -17.40311 -17.23921 -16.79059 -16.51253 -16.23517 -16.16748 -15.75483 -15.43966 -14.98912 -14.82038 -14.74594 -14.58210 -14.22626 -14.05772 -13.87902 -13.70789 -13.37844 -13.16653 -13.06797 -12.75124 -12.66249 -12.60959 -12.47697 -12.21944 -12.18273 -12.10429 -11.46613 -11.45660 -11.25061 -10.87171 -10.67830 -10.57250 -10.37653 -10.10194 -10.03709 -8.89135 -8.00489 -6.15496 -0.65007 -0.20860 0.79062 1.32656 1.45490 1.47960 1.52699 1.53408 2.06306 2.08961 2.48548 2.91460 3.18444 3.23864 3.26879 3.69362 3.85593 3.92599 4.25942 4.30566 4.34208 4.41333 4.41606 4.52439 4.52977 4.55161 4.70071 4.74142 4.75558 4.99767 5.00194 5.09014 5.09203 5.14340 5.23344 5.27922 5.31579 5.40334 5.46276 5.54740 5.70540 5.71337 5.87688 5.89721 6.19878 6.23715 6.43790 6.46269 6.64887 6.87969 7.03029 7.52269 8.98026 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.002905 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.691928 B = 9635.896505 C =10874.445689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.510 5.510 3 C 0.078 3.922 4 C 0.549 3.451 5 O -0.563 6.563 6 N -0.689 5.689 7 C 0.148 3.852 8 C 0.052 3.948 9 C -0.124 4.124 10 C -0.124 4.124 11 C -0.529 4.529 12 H 0.045 0.955 13 C 0.032 3.968 14 N -0.897 5.897 15 Si 0.940 3.060 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.278 1.278 19 C -0.118 4.118 20 C -0.025 4.025 21 C -0.108 4.108 22 C -0.079 4.079 23 C -0.119 4.119 24 C -0.070 4.070 25 C -0.162 4.162 26 C 0.537 3.463 27 O -0.563 6.563 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.412 0.588 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.260 0.740 41 H 0.180 0.820 42 H 0.166 0.834 43 H 0.169 0.831 44 H 0.162 0.838 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.184 -17.865 -0.603 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.226 5.226 3 C -0.025 4.025 4 C 0.335 3.665 5 O -0.444 6.444 6 N -0.341 5.341 7 C 0.025 3.975 8 C 0.052 3.948 9 C -0.181 4.181 10 C -0.181 4.181 11 C -0.568 4.568 12 H 0.064 0.936 13 C -0.169 4.169 14 N -0.535 5.535 15 Si 0.767 3.233 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.204 1.204 19 C -0.143 4.143 20 C -0.026 4.026 21 C -0.126 4.126 22 C -0.097 4.097 23 C -0.137 4.137 24 C -0.089 4.089 25 C -0.166 4.166 26 C 0.333 3.667 27 O -0.445 6.445 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.251 0.749 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.197 0.803 42 H 0.184 0.816 43 H 0.186 0.814 44 H 0.179 0.821 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.027 -18.324 -0.648 20.437 hybrid contribution -0.852 1.215 0.031 1.484 sum 8.175 -17.109 -0.617 18.972 Atomic orbital electron populations 1.22113 0.76409 1.03357 1.04340 1.44966 1.09550 1.04475 1.63604 1.19600 0.92709 0.85312 1.04921 1.18033 0.87084 0.83795 0.77622 1.90799 1.14792 1.87379 1.51411 1.45961 1.11843 1.04817 1.71471 1.21431 0.94215 0.82074 0.99818 1.18359 0.92466 0.90378 0.93635 1.21705 0.99491 1.00202 0.96749 1.21704 0.99301 1.00414 0.96717 1.21245 0.93088 0.91675 1.50801 0.93646 1.25377 0.95722 1.00983 0.94775 1.69879 1.07848 1.25710 1.50089 0.85896 0.78813 0.80213 0.78332 1.20429 1.20975 1.20382 1.22224 0.89811 0.99706 1.02598 1.19117 0.95021 0.90502 0.97965 1.21620 0.90868 1.01094 0.99004 1.21822 1.02314 0.91212 0.94332 1.21636 0.92747 1.00306 0.98963 1.21219 0.95143 0.96512 0.95993 1.20001 0.90730 0.96001 1.09830 1.18624 0.89025 0.82158 0.76852 1.90796 1.69727 1.31004 1.52932 0.90546 0.89574 0.90231 0.74868 0.93420 0.93482 0.94045 0.91818 0.96306 0.96221 0.91843 0.93969 0.93029 0.80324 0.81607 0.81385 0.82090 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 8.86 127.77 1.13 3.45 16 2 N -0.51 -15.21 3.04 -654.69 -1.99 -17.20 16 3 C 0.08 2.13 6.63 40.03 0.27 2.39 16 4 C 0.55 17.36 7.66 86.67 0.66 18.02 16 5 O -0.56 -21.09 12.96 -4.01 -0.05 -21.14 16 6 N -0.69 -21.04 4.89 -466.35 -2.28 -23.32 16 7 C 0.15 5.67 4.50 86.38 0.39 6.06 16 8 C 0.05 2.22 0.50 -52.93 -0.03 2.19 16 9 C -0.12 -5.02 8.08 71.98 0.58 -4.44 16 10 C -0.12 -4.98 8.08 71.98 0.58 -4.40 16 11 C -0.53 -26.50 8.01 25.60 0.21 -26.30 16 12 H 0.05 2.32 7.74 -2.91 -0.02 2.30 16 13 C 0.03 1.59 5.15 84.65 0.44 2.02 16 14 N -0.90 -45.58 9.35 21.44 0.20 -45.38 16 15 Si 0.94 41.13 29.54 68.60 2.03 43.15 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 C -0.12 -2.48 9.46 23.75 0.22 -2.25 16 20 C -0.02 -0.49 5.89 -20.08 -0.12 -0.61 16 21 C -0.11 -1.39 9.86 22.49 0.22 -1.17 16 22 C -0.08 -0.77 10.01 22.30 0.22 -0.55 16 23 C -0.12 -1.43 10.01 22.33 0.22 -1.21 16 24 C -0.07 -1.35 9.65 22.44 0.22 -1.13 16 25 C -0.16 -3.95 5.90 -19.95 -0.12 -4.06 16 26 C 0.54 16.33 7.63 86.54 0.66 16.99 16 27 O -0.56 -19.67 15.77 -4.49 -0.07 -19.74 16 28 H 0.08 2.30 7.30 -2.39 -0.02 2.28 16 29 H 0.09 2.45 6.83 -2.39 -0.02 2.44 16 30 H 0.08 2.40 6.96 -2.39 -0.02 2.39 16 31 H 0.41 10.39 4.08 -92.71 -0.38 10.01 16 32 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.34 6.86 -2.39 -0.02 1.33 16 35 H 0.06 2.93 6.07 -2.38 -0.01 2.91 16 36 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 2.90 6.07 -2.38 -0.01 2.89 16 39 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 40 H 0.26 12.85 8.31 -92.71 -0.77 12.08 16 41 H 0.18 2.68 6.24 -2.91 -0.02 2.67 16 42 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 44 H 0.16 0.94 8.06 -2.92 -0.02 0.91 16 45 H 0.13 2.60 7.77 -2.91 -0.02 2.57 16 Total: -1.00 -64.18 360.59 4.24 -59.94 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.65 Total: 18.67 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 5.76 Total: 5.01 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -4.07 Total: -85.89 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.12 Total: -40.88 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -64.18 4.24 -59.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458013247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.819 kcal (2) G-P(sol) polarization free energy of solvation -64.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds