Wall clock time and date at job start Tue Mar 31 2020 16:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35491 * 118.72424 * 2 1 4 4 C 1.36240 * 122.19846 * 179.97438 * 3 2 1 5 5 C 1.47085 * 120.45309 * 180.02562 * 4 3 2 6 6 O 1.21659 * 120.00227 * 173.92234 * 5 4 3 7 7 N 1.34778 * 120.00052 * 353.92608 * 5 4 3 8 8 C 1.46502 * 120.00047 * 185.08054 * 7 5 4 9 9 C 1.52996 * 109.47035 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47528 * 299.99824 * 9 8 7 11 11 C 1.53004 * 109.47095 * 60.00390 * 9 8 7 12 12 C 1.50701 * 109.47234 * 179.97438 * 9 8 7 13 13 H 1.08001 * 119.99971 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00257 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00159 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 120.00212 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.46969 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47212 * 119.99944 * 16 14 12 19 19 H 1.48501 * 109.46917 * 239.99895 * 16 14 12 20 20 C 1.47350 * 119.09529 * 0.02562 * 4 3 2 21 21 C 1.39209 * 121.96446 * 179.97438 * 20 4 3 22 22 C 1.37826 * 119.54664 * 180.02562 * 21 20 4 23 23 C 1.38845 * 120.68409 * 0.02562 * 22 21 20 24 24 C 1.37759 * 120.69886 * 0.02562 * 23 22 21 25 25 C 1.39439 * 119.53076 * 359.97438 * 24 23 22 26 26 C 1.34670 * 118.71801 * 179.73295 * 2 1 3 27 27 O 1.21721 * 120.21341 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.47152 * 89.99554 * 1 2 3 29 29 H 1.08998 * 109.47197 * 330.00030 * 1 2 3 30 30 H 1.09000 * 109.47388 * 209.99928 * 1 2 3 31 31 H 1.08001 * 118.89839 * 0.02562 * 3 2 1 32 32 H 0.96994 * 119.99887 * 5.07790 * 7 5 4 33 33 H 1.09002 * 109.47035 * 300.00173 * 8 7 5 34 34 H 1.09002 * 109.47051 * 59.99558 * 8 7 5 35 35 H 1.09006 * 109.46584 * 60.00351 * 10 9 8 36 36 H 1.08996 * 109.47130 * 179.97438 * 10 9 8 37 37 H 1.08995 * 109.47330 * 300.00426 * 10 9 8 38 38 H 1.08989 * 109.47392 * 59.99667 * 11 9 8 39 39 H 1.09000 * 109.47169 * 180.02562 * 11 9 8 40 40 H 1.09004 * 109.46896 * 299.99366 * 11 9 8 41 41 H 0.96997 * 120.00129 * 179.97438 * 15 14 12 42 42 H 1.08004 * 120.22473 * 0.04432 * 21 20 4 43 43 H 1.08002 * 119.65819 * 179.97438 * 22 21 20 44 44 H 1.08004 * 119.65210 * 180.02562 * 23 22 21 45 45 H 1.08004 * 120.23112 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1162 1.1882 0.0000 4 6 3.4761 1.2707 0.0005 5 6 4.1433 2.5815 0.0011 6 8 5.3529 2.6484 0.1131 7 7 3.4148 3.7087 -0.1224 8 6 4.0858 5.0062 -0.2339 9 6 3.0376 6.1131 -0.3626 10 6 2.1888 5.8690 -1.6119 11 6 2.1372 6.1092 0.8745 12 6 3.7278 7.4479 -0.4766 13 1 4.8064 7.5013 -0.4594 14 6 2.9825 8.6009 -0.6028 15 7 1.6691 8.5360 -0.6233 16 14 3.8382 10.2554 -0.7449 17 1 5.3091 10.0577 -0.6953 18 1 3.4673 10.8956 -2.0325 19 1 3.4183 11.1281 0.3809 20 6 4.2693 0.0290 0.0005 21 6 5.6613 0.0437 0.0005 22 6 6.3536 -1.1481 0.0000 23 6 5.6770 -2.3605 -0.0011 24 6 4.2999 -2.3974 -0.0021 25 6 3.5803 -1.2030 -0.0016 26 6 2.1121 -1.1810 0.0055 27 8 1.4839 -2.2236 0.0108 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 0.8900 0.5138 30 1 -0.3634 -0.8900 0.5138 31 1 1.5378 2.1003 0.0004 32 1 2.4461 3.6608 -0.1376 33 1 4.6909 5.1799 0.6560 34 1 4.7270 5.0091 -1.1154 35 1 1.6894 4.9037 -1.5290 36 1 1.4417 6.6574 -1.7033 37 1 2.8302 5.8718 -2.4932 38 1 2.7419 6.2831 1.7645 39 1 1.3901 6.8976 0.7826 40 1 1.6379 5.1439 0.9574 41 1 1.1448 9.3473 -0.7117 42 1 6.1951 0.9826 0.0012 43 1 7.4336 -1.1388 -0.0005 44 1 6.2362 -3.2845 -0.0011 45 1 3.7813 -3.3448 -0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458047599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:39 Heat of formation + Delta-G solvation = -26.307298 kcal Electronic energy + Delta-G solvation = -27807.590358 eV Core-core repulsion = 23983.189295 eV Total energy + Delta-G solvation = -3824.401063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.55041 -39.45334 -38.44847 -37.09296 -36.40775 -33.57948 -33.06864 -31.35135 -31.06016 -29.50484 -27.77994 -25.81619 -25.76843 -25.18954 -24.30877 -23.41572 -22.25531 -20.56586 -18.94460 -18.44051 -18.31356 -17.68483 -16.39424 -16.33167 -15.92441 -15.56595 -15.17390 -14.84013 -14.76104 -14.63655 -14.33405 -13.97565 -13.66273 -13.34712 -13.06525 -13.01163 -12.90369 -12.70436 -12.58271 -12.25936 -11.83487 -11.64233 -11.49296 -11.43229 -11.27528 -10.93814 -10.70919 -10.47370 -10.35099 -10.25647 -9.72551 -9.66091 -9.55663 -9.30354 -9.13559 -8.85695 -8.58467 -8.41832 -7.90547 -6.08461 -4.18380 0.53655 0.66003 1.65767 2.30303 2.61730 3.23537 3.32517 3.34738 3.36838 3.53684 3.93550 4.08792 4.18108 4.35563 4.69783 4.71603 4.84893 4.89210 4.98434 5.10175 5.18927 5.23690 5.26486 5.32090 5.48236 5.63832 5.91812 6.06268 6.13723 6.16959 6.25170 6.38268 6.40125 6.44287 6.68257 6.70945 6.74543 6.81177 6.84247 6.93687 6.95707 7.27223 7.47294 7.56445 7.63323 7.90860 7.93246 8.07026 8.31252 8.56095 8.82608 9.48043 10.93079 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.002950 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.221821 B = 9488.593845 C =10711.044625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.517 5.517 3 C 0.158 3.842 4 C -0.205 4.205 5 C 0.568 3.432 6 O -0.543 6.543 7 N -0.713 5.713 8 C 0.132 3.868 9 C 0.055 3.945 10 C -0.131 4.131 11 C -0.131 4.131 12 C -0.506 4.506 13 H 0.059 0.941 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.027 3.973 21 C -0.118 4.118 22 C -0.088 4.088 23 C -0.139 4.139 24 C -0.056 4.056 25 C -0.157 4.157 26 C 0.548 3.452 27 O -0.522 6.522 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.164 0.836 32 H 0.393 0.607 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.004 0.996 36 H 0.086 0.914 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.086 0.914 40 H 0.004 0.996 41 H 0.260 0.740 42 H 0.170 0.830 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 -17.518 1.162 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.230 5.230 3 C 0.033 3.967 4 C -0.215 4.215 5 C 0.355 3.645 6 O -0.423 6.423 7 N -0.364 5.364 8 C 0.010 3.990 9 C 0.054 3.946 10 C -0.189 4.189 11 C -0.189 4.189 12 C -0.544 4.544 13 H 0.077 0.923 14 C -0.135 4.135 15 N -0.525 5.525 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C 0.025 3.975 21 C -0.135 4.135 22 C -0.107 4.107 23 C -0.157 4.157 24 C -0.075 4.075 25 C -0.160 4.160 26 C 0.344 3.656 27 O -0.401 6.401 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.181 0.819 32 H 0.229 0.771 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.023 0.977 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.105 0.895 40 H 0.022 0.978 41 H 0.070 0.930 42 H 0.187 0.813 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.444 -17.967 1.206 18.013 hybrid contribution -0.200 1.012 -0.109 1.038 sum -0.644 -16.955 1.097 17.003 Atomic orbital electron populations 1.22231 0.76636 1.05261 1.04183 1.44762 1.09329 1.05713 1.63233 1.21765 0.93230 0.89089 0.92627 1.20132 0.91384 0.94145 1.15794 1.17503 0.86884 0.83018 0.77079 1.90596 1.13778 1.86620 1.51297 1.46252 1.10099 1.07237 1.72788 1.21779 0.96357 0.80161 1.00690 1.18373 0.91481 0.91929 0.92770 1.21839 1.00802 0.98359 0.97864 1.21840 1.00774 0.98678 0.97575 1.21016 0.93048 0.90151 1.50211 0.92286 1.24875 0.94842 0.99004 0.94763 1.69801 1.04351 1.27976 1.50357 0.86516 0.79948 0.83846 0.77594 1.19711 1.21057 1.21061 1.18666 0.93768 0.89838 0.95208 1.22137 0.92978 1.00730 0.97689 1.21469 1.00466 0.92199 0.96535 1.21177 0.93869 0.98391 1.02241 1.20942 0.93841 0.96806 0.95918 1.19690 0.91460 0.94427 1.10425 1.18269 0.88202 0.82547 0.76609 1.90833 1.68757 1.30737 1.49725 0.90443 0.89223 0.88786 0.81872 0.77070 0.92283 0.92411 0.97723 0.89536 0.95300 0.95282 0.89517 0.97754 0.93030 0.81286 0.85361 0.85452 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.28 59.85 0.62 1.06 16 2 N -0.52 -5.68 2.98 -124.89 -0.37 -6.05 16 3 C 0.16 1.73 9.71 -16.65 -0.16 1.57 16 4 C -0.21 -2.83 5.99 -103.32 -0.62 -3.45 16 5 C 0.57 9.26 7.72 -12.67 -0.10 9.17 16 6 O -0.54 -10.30 13.64 5.23 0.07 -10.23 16 7 N -0.71 -11.51 4.90 -61.49 -0.30 -11.82 16 8 C 0.13 2.60 4.51 -4.04 -0.02 2.58 16 9 C 0.06 1.20 0.50 -155.66 -0.08 1.12 16 10 C -0.13 -2.75 8.08 37.16 0.30 -2.45 16 11 C -0.13 -2.75 8.08 37.16 0.30 -2.45 16 12 C -0.51 -12.66 8.01 -34.44 -0.28 -12.94 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 15 N -0.89 -22.70 9.35 55.43 0.52 -22.18 16 16 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.03 0.38 5.90 -104.72 -0.62 -0.23 16 21 C -0.12 -1.61 9.33 -39.37 -0.37 -1.98 16 22 C -0.09 -0.97 10.01 -39.51 -0.40 -1.37 16 23 C -0.14 -1.41 10.01 -39.53 -0.40 -1.80 16 24 C -0.06 -0.66 9.65 -39.31 -0.38 -1.04 16 25 C -0.16 -2.12 5.89 -104.86 -0.62 -2.73 16 26 C 0.55 7.39 7.61 -12.83 -0.10 7.29 16 27 O -0.52 -7.93 15.99 5.17 0.08 -7.84 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.46 7.95 -51.93 -0.41 0.04 16 30 H 0.09 0.76 7.32 -51.93 -0.38 0.38 16 31 H 0.16 1.35 6.19 -52.49 -0.32 1.03 16 32 H 0.39 5.49 4.17 -40.82 -0.17 5.32 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 36 H 0.09 2.03 6.07 -51.93 -0.32 1.72 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.61 8.14 -51.94 -0.42 0.19 16 39 H 0.09 2.04 6.07 -51.93 -0.32 1.72 16 40 H 0.00 0.06 6.86 -51.93 -0.36 -0.29 16 41 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 42 H 0.17 2.58 5.13 -52.48 -0.27 2.31 16 43 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.13 1.43 7.78 -52.48 -0.41 1.02 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -29.73 361.45 -8.38 -38.11 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.81 Total: 5.56 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -3.00 Total: -6.07 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: -0.15 Total: -40.05 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.15 Total: -18.07 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.73 -8.38 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.802 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds