Wall clock time and date at job start Tue Mar 31 2020 16:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35491 * 118.72424 * 2 1 4 4 C 1.36240 * 122.19846 * 179.97438 * 3 2 1 5 5 C 1.47085 * 120.45309 * 180.02562 * 4 3 2 6 6 O 1.21659 * 120.00227 * 173.92234 * 5 4 3 7 7 N 1.34778 * 120.00052 * 353.92608 * 5 4 3 8 8 C 1.46502 * 120.00047 * 185.08054 * 7 5 4 9 9 C 1.52996 * 109.47035 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47528 * 299.99824 * 9 8 7 11 11 C 1.53004 * 109.47095 * 60.00390 * 9 8 7 12 12 C 1.50701 * 109.47234 * 179.97438 * 9 8 7 13 13 H 1.08001 * 119.99971 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00257 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00159 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 120.00212 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.46969 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47212 * 119.99944 * 16 14 12 19 19 H 1.48501 * 109.46917 * 239.99895 * 16 14 12 20 20 C 1.47350 * 119.09529 * 0.02562 * 4 3 2 21 21 C 1.39209 * 121.96446 * 179.97438 * 20 4 3 22 22 C 1.37826 * 119.54664 * 180.02562 * 21 20 4 23 23 C 1.38845 * 120.68409 * 0.02562 * 22 21 20 24 24 C 1.37759 * 120.69886 * 0.02562 * 23 22 21 25 25 C 1.39439 * 119.53076 * 359.97438 * 24 23 22 26 26 C 1.34670 * 118.71801 * 179.73295 * 2 1 3 27 27 O 1.21721 * 120.21341 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.47152 * 89.99554 * 1 2 3 29 29 H 1.08998 * 109.47197 * 330.00030 * 1 2 3 30 30 H 1.09000 * 109.47388 * 209.99928 * 1 2 3 31 31 H 1.08001 * 118.89839 * 0.02562 * 3 2 1 32 32 H 0.96994 * 119.99887 * 5.07790 * 7 5 4 33 33 H 1.09002 * 109.47035 * 300.00173 * 8 7 5 34 34 H 1.09002 * 109.47051 * 59.99558 * 8 7 5 35 35 H 1.09006 * 109.46584 * 60.00351 * 10 9 8 36 36 H 1.08996 * 109.47130 * 179.97438 * 10 9 8 37 37 H 1.08995 * 109.47330 * 300.00426 * 10 9 8 38 38 H 1.08989 * 109.47392 * 59.99667 * 11 9 8 39 39 H 1.09000 * 109.47169 * 180.02562 * 11 9 8 40 40 H 1.09004 * 109.46896 * 299.99366 * 11 9 8 41 41 H 0.96997 * 120.00129 * 179.97438 * 15 14 12 42 42 H 1.08004 * 120.22473 * 0.04432 * 21 20 4 43 43 H 1.08002 * 119.65819 * 179.97438 * 22 21 20 44 44 H 1.08004 * 119.65210 * 180.02562 * 23 22 21 45 45 H 1.08004 * 120.23112 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1162 1.1882 0.0000 4 6 3.4761 1.2707 0.0005 5 6 4.1433 2.5815 0.0011 6 8 5.3529 2.6484 0.1131 7 7 3.4148 3.7087 -0.1224 8 6 4.0858 5.0062 -0.2339 9 6 3.0376 6.1131 -0.3626 10 6 2.1888 5.8690 -1.6119 11 6 2.1372 6.1092 0.8745 12 6 3.7278 7.4479 -0.4766 13 1 4.8064 7.5013 -0.4594 14 6 2.9825 8.6009 -0.6028 15 7 1.6691 8.5360 -0.6233 16 14 3.8382 10.2554 -0.7449 17 1 5.3091 10.0577 -0.6953 18 1 3.4673 10.8956 -2.0325 19 1 3.4183 11.1281 0.3809 20 6 4.2693 0.0290 0.0005 21 6 5.6613 0.0437 0.0005 22 6 6.3536 -1.1481 0.0000 23 6 5.6770 -2.3605 -0.0011 24 6 4.2999 -2.3974 -0.0021 25 6 3.5803 -1.2030 -0.0016 26 6 2.1121 -1.1810 0.0055 27 8 1.4839 -2.2236 0.0108 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 0.8900 0.5138 30 1 -0.3634 -0.8900 0.5138 31 1 1.5378 2.1003 0.0004 32 1 2.4461 3.6608 -0.1376 33 1 4.6909 5.1799 0.6560 34 1 4.7270 5.0091 -1.1154 35 1 1.6894 4.9037 -1.5290 36 1 1.4417 6.6574 -1.7033 37 1 2.8302 5.8718 -2.4932 38 1 2.7419 6.2831 1.7645 39 1 1.3901 6.8976 0.7826 40 1 1.6379 5.1439 0.9574 41 1 1.1448 9.3473 -0.7117 42 1 6.1951 0.9826 0.0012 43 1 7.4336 -1.1388 -0.0005 44 1 6.2362 -3.2845 -0.0011 45 1 3.7813 -3.3448 -0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458047599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:38 Heat of formation + Delta-G solvation = -42.575944 kcal Electronic energy + Delta-G solvation = -27808.295819 eV Core-core repulsion = 23983.189295 eV Total energy + Delta-G solvation = -3825.106524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.51465 -40.72996 -39.40347 -38.20481 -37.93391 -35.08286 -34.09996 -32.74521 -32.26302 -30.54869 -28.54976 -27.51230 -27.41781 -26.79223 -25.41763 -24.29607 -23.33061 -21.78267 -20.60249 -19.40085 -19.36602 -18.72276 -17.81286 -17.33185 -17.24721 -16.78106 -16.54377 -16.17424 -16.12892 -15.64933 -15.52485 -14.97383 -14.79158 -14.54351 -14.44519 -14.40413 -13.97993 -13.87598 -13.64440 -13.33621 -13.16707 -13.06610 -12.72705 -12.67784 -12.55839 -12.45415 -12.40691 -12.20383 -12.10607 -11.44345 -11.35992 -11.19136 -10.72381 -10.61365 -10.58113 -10.37124 -10.06981 -9.95618 -8.86853 -8.00286 -6.14837 -0.38570 -0.30614 0.66981 1.42590 1.44282 1.47893 1.56241 1.64049 2.17758 2.26007 2.50272 2.96010 3.15391 3.24053 3.34374 3.76814 3.81190 3.99851 4.11771 4.26598 4.33505 4.40545 4.44914 4.48520 4.57487 4.61099 4.72707 4.77403 4.79416 5.02247 5.06697 5.09754 5.13885 5.18635 5.24966 5.26641 5.37839 5.49019 5.51754 5.64384 5.71413 5.72339 5.80475 5.93038 6.21239 6.25906 6.47407 6.58635 6.65431 6.89773 7.30015 7.52974 8.98504 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.002950 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.221821 B = 9488.593845 C =10711.044625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.513 5.513 3 C 0.189 3.811 4 C -0.234 4.234 5 C 0.572 3.428 6 O -0.575 6.575 7 N -0.705 5.705 8 C 0.149 3.851 9 C 0.051 3.949 10 C -0.122 4.122 11 C -0.122 4.122 12 C -0.527 4.527 13 H 0.044 0.956 14 C 0.030 3.970 15 N -0.898 5.898 16 Si 0.940 3.060 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.014 3.986 21 C -0.145 4.145 22 C -0.081 4.081 23 C -0.131 4.131 24 C -0.061 4.061 25 C -0.178 4.178 26 C 0.543 3.457 27 O -0.544 6.544 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.198 0.802 32 H 0.406 0.594 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.259 0.741 42 H 0.149 0.851 43 H 0.154 0.846 44 H 0.163 0.837 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.686 -18.977 1.203 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.224 5.224 3 C 0.062 3.938 4 C -0.243 4.243 5 C 0.361 3.639 6 O -0.457 6.457 7 N -0.357 5.357 8 C 0.026 3.974 9 C 0.050 3.950 10 C -0.180 4.180 11 C -0.180 4.180 12 C -0.565 4.565 13 H 0.062 0.938 14 C -0.170 4.170 15 N -0.537 5.537 16 Si 0.768 3.232 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.209 1.209 20 C 0.012 3.988 21 C -0.162 4.162 22 C -0.099 4.099 23 C -0.149 4.149 24 C -0.080 4.080 25 C -0.181 4.181 26 C 0.339 3.661 27 O -0.424 6.424 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.106 0.894 31 H 0.215 0.785 32 H 0.244 0.756 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.166 0.834 43 H 0.171 0.829 44 H 0.180 0.820 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.477 -19.432 1.247 19.528 hybrid contribution 0.108 1.393 -0.119 1.402 sum -1.368 -18.040 1.128 18.127 Atomic orbital electron populations 1.22560 0.74241 1.06648 1.05555 1.44914 1.10810 1.04998 1.61724 1.22103 0.92497 0.90054 0.89102 1.19842 0.92535 0.92611 1.19301 1.17804 0.86507 0.83678 0.75955 1.90595 1.15389 1.87160 1.52605 1.45971 1.10568 1.05985 1.73197 1.21307 0.95569 0.81336 0.99193 1.18364 0.91932 0.91087 0.93573 1.21685 0.99906 0.99484 0.96905 1.21688 0.99883 0.99869 0.96569 1.21322 0.92673 0.92220 1.50318 0.93760 1.25389 0.95446 1.01243 0.94887 1.69897 1.04807 1.28358 1.50599 0.85779 0.78905 0.81107 0.77430 1.20062 1.20893 1.20909 1.18788 0.94083 0.90288 0.95680 1.22061 0.93219 1.01006 0.99953 1.21773 1.01771 0.91588 0.94802 1.21533 0.93430 0.99371 1.00519 1.21214 0.94681 0.96674 0.95419 1.19856 0.91783 0.94788 1.11664 1.18383 0.88321 0.82997 0.76364 1.90815 1.69158 1.31572 1.50906 0.89084 0.85983 0.89367 0.78539 0.75575 0.93985 0.93966 0.94006 0.91940 0.96343 0.96363 0.91909 0.94006 0.93108 0.83409 0.82877 0.81965 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 10.28 127.77 1.31 1.90 16 2 N -0.51 -9.98 2.98 -667.30 -1.99 -11.96 16 3 C 0.19 3.63 9.71 83.66 0.81 4.44 16 4 C -0.23 -6.20 5.99 -19.02 -0.11 -6.32 16 5 C 0.57 18.40 7.72 86.56 0.67 19.06 16 6 O -0.58 -22.41 13.64 -4.22 -0.06 -22.47 16 7 N -0.71 -21.79 4.90 -466.68 -2.29 -24.08 16 8 C 0.15 5.87 4.51 86.38 0.39 6.26 16 9 C 0.05 2.19 0.50 -52.93 -0.03 2.16 16 10 C -0.12 -4.97 8.08 71.98 0.58 -4.38 16 11 C -0.12 -4.98 8.08 71.98 0.58 -4.40 16 12 C -0.53 -26.68 8.01 25.60 0.21 -26.47 16 13 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 14 C 0.03 1.53 5.15 84.65 0.44 1.97 16 15 N -0.90 -45.91 9.35 21.45 0.20 -45.71 16 16 Si 0.94 41.44 29.54 68.60 2.03 43.47 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 C 0.01 0.38 5.90 -19.93 -0.12 0.26 16 21 C -0.14 -3.99 9.33 22.41 0.21 -3.78 16 22 C -0.08 -1.68 10.01 22.32 0.22 -1.46 16 23 C -0.13 -2.36 10.01 22.30 0.22 -2.14 16 24 C -0.06 -1.35 9.65 22.45 0.22 -1.13 16 25 C -0.18 -4.64 5.89 -20.02 -0.12 -4.76 16 26 C 0.54 13.89 7.61 86.51 0.66 14.55 16 27 O -0.54 -15.88 15.99 -4.42 -0.07 -15.95 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.12 0.67 7.95 -2.39 -0.02 0.65 16 30 H 0.09 1.21 7.32 -2.39 -0.02 1.19 16 31 H 0.20 2.35 6.19 -2.91 -0.02 2.33 16 32 H 0.41 10.06 4.17 -92.71 -0.39 9.67 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.04 1.34 6.86 -2.38 -0.02 1.33 16 36 H 0.06 2.88 6.07 -2.39 -0.01 2.86 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 2.89 6.07 -2.39 -0.01 2.88 16 40 H 0.04 1.34 6.86 -2.39 -0.02 1.32 16 41 H 0.26 12.82 8.31 -92.71 -0.77 12.05 16 42 H 0.15 4.73 5.13 -2.91 -0.01 4.72 16 43 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 44 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 45 H 0.14 2.83 7.78 -2.91 -0.02 2.80 16 Total: -1.00 -66.36 361.45 4.61 -61.75 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.64 Total: 19.19 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 6.14 Total: -4.23 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -4.07 Total: -81.75 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.13 Total: -38.42 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -66.36 4.61 -61.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.178 kcal (2) G-P(sol) polarization free energy of solvation -66.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds