Wall clock time and date at job start Tue Mar 31 2020 15:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.08998 * 109.46762 * 42.00516 * 3 2 1 5 5 N 1.46492 * 109.47273 * 282.00073 * 3 2 1 6 6 C 1.34777 * 120.00151 * 85.00163 * 5 3 2 7 7 O 1.21368 * 119.99656 * 359.97438 * 6 5 3 8 8 C 1.49353 * 120.00336 * 180.02562 * 6 5 3 9 9 O 1.21377 * 120.00046 * 359.97438 * 8 6 5 10 10 N 1.34779 * 120.00000 * 180.27687 * 8 6 5 11 11 C 1.39744 * 119.99561 * 174.61234 * 10 8 6 12 12 C 1.39348 * 119.94700 * 145.75959 * 11 10 8 13 13 C 1.38470 * 120.41981 * 179.97438 * 12 11 10 14 14 C 1.37695 * 120.33246 * 359.97438 * 13 12 11 15 15 C 1.40745 * 119.89237 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.20645 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99982 * 205.18666 * 16 15 14 18 18 C 1.39933 * 120.00158 * 25.18618 * 16 15 14 19 19 N 1.30832 * 119.99724 * 16.79149 * 18 16 15 20 20 Si 1.86798 * 120.00014 * 196.79242 * 18 16 15 21 21 H 1.48497 * 109.47095 * 60.00183 * 20 18 16 22 22 H 1.48500 * 109.46775 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47395 * 299.99966 * 20 18 16 24 24 C 1.38298 * 119.95595 * 325.48158 * 11 10 8 25 25 C 1.52998 * 109.46595 * 162.00056 * 3 2 1 26 26 C 1.53008 * 109.46929 * 179.97438 * 25 3 2 27 27 C 1.52997 * 109.47680 * 299.99907 * 25 3 2 28 28 C 1.52994 * 109.47331 * 60.00354 * 25 3 2 29 29 H 4.18738 * 15.04045 * 359.97438 * 4 2 1 30 30 H 0.97005 * 120.00223 * 265.00286 * 5 3 2 31 31 H 0.97001 * 120.00112 * 354.61229 * 10 8 6 32 32 H 1.07999 * 119.79236 * 359.97438 * 12 11 10 33 33 H 1.08006 * 119.83535 * 179.97438 * 13 12 11 34 34 H 1.07998 * 120.05426 * 179.97438 * 14 13 12 35 35 H 0.96999 * 119.99770 * 180.02562 * 19 18 16 36 36 H 1.08001 * 120.16386 * 0.02562 * 24 11 10 37 37 H 1.08998 * 109.46527 * 60.00400 * 26 25 3 38 38 H 1.08999 * 109.46920 * 179.97438 * 26 25 3 39 39 H 1.08994 * 109.46978 * 300.00163 * 26 25 3 40 40 H 1.09002 * 109.46686 * 59.99970 * 27 25 3 41 41 H 1.08991 * 109.47538 * 180.02562 * 27 25 3 42 42 H 1.08999 * 109.47002 * 300.00874 * 27 25 3 43 43 H 1.09007 * 109.47497 * 59.99326 * 28 25 3 44 44 H 1.09004 * 109.47609 * 179.97438 * 28 25 3 45 45 H 1.09001 * 109.47368 * 299.99959 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.7628 -0.6877 5 7 3.1345 -0.2863 1.3509 6 6 3.2638 -1.5627 1.7638 7 8 2.9751 -2.4744 1.0165 8 6 3.7613 -1.8553 3.1413 9 8 4.0495 -0.9436 3.8889 10 7 3.8959 -3.1319 3.5522 11 6 4.4664 -3.4085 4.7976 12 6 4.0155 -4.4959 5.5432 13 6 4.5742 -4.7793 6.7780 14 6 5.5827 -3.9892 7.2829 15 6 6.0485 -2.8875 6.5412 16 6 7.0834 -2.0713 7.0535 17 1 7.1714 -1.0446 6.7305 18 6 7.9935 -2.5940 7.9791 19 7 8.1050 -3.8892 8.1269 20 14 9.0492 -1.4427 9.0034 21 1 8.1741 -0.5626 9.8187 22 1 9.9231 -2.2398 9.9013 23 1 9.8892 -0.6105 8.1051 24 6 5.4816 -2.6061 5.2856 25 6 3.1552 1.3728 -0.4458 26 6 4.6853 1.3738 -0.4452 27 6 2.6451 1.6726 -1.8567 28 6 2.6448 2.4445 0.5195 29 1 -1.0501 -0.0009 -0.0002 30 1 3.3648 0.4424 1.9484 31 1 3.5968 -3.8585 2.9835 32 1 3.2253 -5.1217 5.1555 33 1 4.2172 -5.6243 7.3482 34 1 6.0149 -4.2141 8.2467 35 1 8.7356 -4.2515 8.7687 36 1 5.8347 -1.7654 4.7068 37 1 5.0493 0.6102 -1.1326 38 1 5.0481 2.3512 -0.7632 39 1 5.0484 1.1605 0.5602 40 1 1.5551 1.6720 -1.8566 41 1 3.0083 2.6499 -2.1744 42 1 3.0088 0.9090 -2.5443 43 1 3.0082 2.2310 1.5248 44 1 3.0080 3.4221 0.2022 45 1 1.5548 2.4440 0.5196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491795166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:36 Heat of formation + Delta-G solvation = -1.010692 kcal Electronic energy + Delta-G solvation = -27099.570852 eV Core-core repulsion = 23276.266732 eV Total energy + Delta-G solvation = -3823.304120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.81158 -39.34835 -37.97132 -37.13056 -34.78756 -33.83921 -33.04860 -32.70067 -29.88041 -28.64383 -27.72726 -27.53051 -27.32400 -25.36559 -24.09558 -21.34472 -20.89401 -20.23535 -19.65217 -18.77420 -18.08884 -17.39506 -16.69120 -15.95641 -15.68292 -15.54605 -15.15858 -14.97927 -14.70265 -14.54264 -14.07076 -13.95408 -13.84589 -13.30551 -13.00896 -12.90273 -12.53123 -12.34808 -12.22784 -11.99475 -11.75012 -11.71019 -11.50463 -11.28625 -11.21345 -11.17551 -11.13741 -10.93629 -10.72755 -10.52158 -10.28796 -10.12419 -9.71853 -9.61042 -9.46570 -9.11340 -9.03494 -7.50636 -7.01342 -6.75352 -4.37773 1.47987 2.14624 2.60780 2.72901 2.84313 2.99670 3.07250 3.10437 3.20153 3.52558 3.87532 3.94334 4.04836 4.31826 4.45289 4.60633 4.61690 4.69993 5.01143 5.19682 5.30711 5.37522 5.46257 5.56172 5.58557 5.65789 5.65934 5.75092 5.82963 5.96803 6.01190 6.06608 6.19912 6.34759 6.58034 6.80624 6.96740 7.00131 7.06599 7.21070 7.38402 7.42088 7.63394 7.75653 7.89227 8.02485 8.07095 8.14515 8.43120 8.62761 8.88675 8.92889 10.18455 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.002734 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.838831 B =10237.155562 C =11472.387427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.191 4.191 3 C 0.263 3.737 4 H 0.112 0.888 5 N -0.696 5.696 6 C 0.515 3.485 7 O -0.518 6.518 8 C 0.497 3.503 9 O -0.498 6.498 10 N -0.632 5.632 11 C 0.144 3.856 12 C -0.255 4.255 13 C -0.091 4.091 14 C -0.168 4.168 15 C 0.120 3.880 16 C -0.458 4.458 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.910 3.090 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.208 4.208 25 C -0.070 4.070 26 C -0.146 4.146 27 C -0.140 4.140 28 C -0.148 4.148 29 H 0.218 0.782 30 H 0.416 0.584 31 H 0.411 0.589 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.281 0.719 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 8.933 -15.174 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.193 4.193 3 C 0.159 3.841 4 H 0.130 0.870 5 N -0.351 5.351 6 C 0.296 3.704 7 O -0.393 6.393 8 C 0.278 3.722 9 O -0.372 6.372 10 N -0.277 5.277 11 C 0.053 3.947 12 C -0.276 4.276 13 C -0.110 4.110 14 C -0.188 4.188 15 C 0.117 3.883 16 C -0.488 4.488 17 H 0.097 0.903 18 C -0.142 4.142 19 N -0.419 5.419 20 Si 0.734 3.266 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.230 4.230 25 C -0.070 4.070 26 C -0.203 4.203 27 C -0.197 4.197 28 C -0.205 4.205 29 H 0.234 0.766 30 H 0.254 0.746 31 H 0.246 0.754 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.763 8.760 -15.068 19.509 hybrid contribution 0.176 0.281 0.457 0.564 sum -8.587 9.041 -14.611 19.209 Atomic orbital electron populations 1.24929 0.95844 1.00871 0.98696 1.23194 0.94398 1.00185 1.01486 1.17934 0.83577 0.98240 0.84339 0.87015 1.45838 1.65445 1.07977 1.15795 1.20403 0.78303 0.83478 0.88234 1.90747 1.48257 1.44655 1.55648 1.19889 0.80677 0.84388 0.87274 1.90816 1.47511 1.44383 1.54521 1.43132 1.58633 1.07039 1.18924 1.17446 0.94935 0.98028 0.84289 1.20073 1.06731 1.02545 0.98261 1.20479 0.97154 0.98613 0.94803 1.21389 0.98005 0.98343 1.01024 1.17466 0.90491 0.91295 0.89058 1.19547 1.09666 0.98755 1.20807 0.90318 1.25909 0.97050 0.95307 0.95926 1.69814 1.30480 1.12494 1.29145 0.86344 0.79555 0.80795 0.79899 1.18779 1.20353 1.18984 1.20961 1.00496 1.03492 0.98008 1.20797 0.96605 0.92737 0.96905 1.21923 0.92971 1.02504 1.02939 1.21844 1.01534 1.02032 0.94309 1.21957 1.01644 0.98166 0.98761 0.76552 0.74557 0.75353 0.88983 0.88797 0.86172 0.90798 0.87583 0.92083 0.91721 0.91802 0.92084 0.91767 0.92155 0.92255 0.91732 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.82 19.25 29.55 0.57 -1.25 16 2 C -0.19 -2.13 10.29 -37.12 -0.38 -2.51 16 3 C 0.26 2.79 1.72 -70.72 -0.12 2.67 16 4 H 0.11 1.25 7.58 -51.93 -0.39 0.86 16 5 N -0.70 -8.67 4.26 -57.02 -0.24 -8.91 16 6 C 0.51 7.98 7.83 -11.63 -0.09 7.89 16 7 O -0.52 -8.70 16.15 5.48 0.09 -8.61 16 8 C 0.50 9.15 7.61 -11.63 -0.09 9.06 16 9 O -0.50 -10.37 14.23 5.47 0.08 -10.30 16 10 N -0.63 -12.02 5.32 -10.34 -0.05 -12.07 16 11 C 0.14 3.28 6.25 -83.82 -0.52 2.76 16 12 C -0.25 -5.64 9.97 -39.08 -0.39 -6.03 16 13 C -0.09 -2.12 10.01 -39.69 -0.40 -2.52 16 14 C -0.17 -4.35 8.69 -38.83 -0.34 -4.69 16 15 C 0.12 3.24 5.57 -106.85 -0.59 2.65 16 16 C -0.46 -12.32 9.05 -37.74 -0.34 -12.66 16 17 H 0.08 2.07 7.90 -52.49 -0.41 1.65 16 18 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 19 N -0.79 -20.40 10.94 55.55 0.61 -19.79 16 20 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 24 C -0.21 -5.30 8.39 -38.67 -0.32 -5.63 16 25 C -0.07 -0.56 0.59 -154.51 -0.09 -0.65 16 26 C -0.15 -1.15 8.32 37.16 0.31 -0.84 16 27 C -0.14 -0.94 8.22 37.16 0.31 -0.64 16 28 C -0.15 -1.15 8.05 37.15 0.30 -0.86 16 29 H 0.22 1.39 7.80 -54.09 -0.42 0.97 16 30 H 0.42 4.89 6.12 -40.82 -0.25 4.64 16 31 H 0.41 6.78 8.30 -40.82 -0.34 6.45 16 32 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 33 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 34 H 0.12 3.18 6.17 -52.49 -0.32 2.86 16 35 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 36 H 0.11 2.72 6.48 -52.49 -0.34 2.38 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.57 7.44 -51.93 -0.39 0.18 16 40 H 0.06 0.43 7.23 -51.93 -0.38 0.06 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.49 6.51 -51.92 -0.34 0.15 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.51 7.23 -51.93 -0.38 0.13 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -30.27 380.64 -7.16 -37.43 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -6.05 Total: 14.22 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.29 Total: -11.42 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.31 Total: -40.77 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.91 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.27 -7.16 -37.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491795166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.422 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds