Wall clock time and date at job start Tue Mar 31 2020 15:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.08998 * 109.46762 * 42.00516 * 3 2 1 5 5 N 1.46492 * 109.47273 * 282.00073 * 3 2 1 6 6 C 1.34777 * 120.00151 * 85.00163 * 5 3 2 7 7 O 1.21368 * 119.99656 * 359.97438 * 6 5 3 8 8 C 1.49353 * 120.00336 * 180.02562 * 6 5 3 9 9 O 1.21377 * 120.00046 * 359.97438 * 8 6 5 10 10 N 1.34779 * 120.00000 * 180.27687 * 8 6 5 11 11 C 1.39744 * 119.99561 * 174.61234 * 10 8 6 12 12 C 1.39348 * 119.94700 * 145.75959 * 11 10 8 13 13 C 1.38470 * 120.41981 * 179.97438 * 12 11 10 14 14 C 1.37695 * 120.33246 * 359.97438 * 13 12 11 15 15 C 1.40745 * 119.89237 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.20645 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99982 * 205.18666 * 16 15 14 18 18 C 1.39933 * 120.00158 * 25.18618 * 16 15 14 19 19 N 1.30832 * 119.99724 * 16.79149 * 18 16 15 20 20 Si 1.86798 * 120.00014 * 196.79242 * 18 16 15 21 21 H 1.48497 * 109.47095 * 60.00183 * 20 18 16 22 22 H 1.48500 * 109.46775 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47395 * 299.99966 * 20 18 16 24 24 C 1.38298 * 119.95595 * 325.48158 * 11 10 8 25 25 C 1.52998 * 109.46595 * 162.00056 * 3 2 1 26 26 C 1.53008 * 109.46929 * 179.97438 * 25 3 2 27 27 C 1.52997 * 109.47680 * 299.99907 * 25 3 2 28 28 C 1.52994 * 109.47331 * 60.00354 * 25 3 2 29 29 H 4.18738 * 15.04045 * 359.97438 * 4 2 1 30 30 H 0.97005 * 120.00223 * 265.00286 * 5 3 2 31 31 H 0.97001 * 120.00112 * 354.61229 * 10 8 6 32 32 H 1.07999 * 119.79236 * 359.97438 * 12 11 10 33 33 H 1.08006 * 119.83535 * 179.97438 * 13 12 11 34 34 H 1.07998 * 120.05426 * 179.97438 * 14 13 12 35 35 H 0.96999 * 119.99770 * 180.02562 * 19 18 16 36 36 H 1.08001 * 120.16386 * 0.02562 * 24 11 10 37 37 H 1.08998 * 109.46527 * 60.00400 * 26 25 3 38 38 H 1.08999 * 109.46920 * 179.97438 * 26 25 3 39 39 H 1.08994 * 109.46978 * 300.00163 * 26 25 3 40 40 H 1.09002 * 109.46686 * 59.99970 * 27 25 3 41 41 H 1.08991 * 109.47538 * 180.02562 * 27 25 3 42 42 H 1.08999 * 109.47002 * 300.00874 * 27 25 3 43 43 H 1.09007 * 109.47497 * 59.99326 * 28 25 3 44 44 H 1.09004 * 109.47609 * 179.97438 * 28 25 3 45 45 H 1.09001 * 109.47368 * 299.99959 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.7628 -0.6877 5 7 3.1345 -0.2863 1.3509 6 6 3.2638 -1.5627 1.7638 7 8 2.9751 -2.4744 1.0165 8 6 3.7613 -1.8553 3.1413 9 8 4.0495 -0.9436 3.8889 10 7 3.8959 -3.1319 3.5522 11 6 4.4664 -3.4085 4.7976 12 6 4.0155 -4.4959 5.5432 13 6 4.5742 -4.7793 6.7780 14 6 5.5827 -3.9892 7.2829 15 6 6.0485 -2.8875 6.5412 16 6 7.0834 -2.0713 7.0535 17 1 7.1714 -1.0446 6.7305 18 6 7.9935 -2.5940 7.9791 19 7 8.1050 -3.8892 8.1269 20 14 9.0492 -1.4427 9.0034 21 1 8.1741 -0.5626 9.8187 22 1 9.9231 -2.2398 9.9013 23 1 9.8892 -0.6105 8.1051 24 6 5.4816 -2.6061 5.2856 25 6 3.1552 1.3728 -0.4458 26 6 4.6853 1.3738 -0.4452 27 6 2.6451 1.6726 -1.8567 28 6 2.6448 2.4445 0.5195 29 1 -1.0501 -0.0009 -0.0002 30 1 3.3648 0.4424 1.9484 31 1 3.5968 -3.8585 2.9835 32 1 3.2253 -5.1217 5.1555 33 1 4.2172 -5.6243 7.3482 34 1 6.0149 -4.2141 8.2467 35 1 8.7356 -4.2515 8.7687 36 1 5.8347 -1.7654 4.7068 37 1 5.0493 0.6102 -1.1326 38 1 5.0481 2.3512 -0.7632 39 1 5.0484 1.1605 0.5602 40 1 1.5551 1.6720 -1.8566 41 1 3.0083 2.6499 -2.1744 42 1 3.0088 0.9090 -2.5443 43 1 3.0082 2.2310 1.5248 44 1 3.0080 3.4221 0.2022 45 1 1.5548 2.4440 0.5196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491795166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:35 Heat of formation + Delta-G solvation = -18.728878 kcal Electronic energy + Delta-G solvation = -27100.339170 eV Core-core repulsion = 23276.266732 eV Total energy + Delta-G solvation = -3824.072438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.14294 -40.64300 -39.16985 -38.76934 -36.45435 -35.10766 -34.61457 -33.56729 -31.79601 -30.36900 -28.48293 -28.22930 -28.14015 -27.29187 -25.47687 -23.04836 -22.63182 -21.45218 -20.68533 -20.05370 -19.51982 -18.69252 -17.97501 -17.46790 -17.11641 -16.79068 -16.69949 -16.47888 -15.97980 -15.71821 -15.23965 -15.14870 -14.74550 -14.74250 -14.66172 -14.12111 -13.99958 -13.57837 -13.12956 -13.06868 -13.04293 -12.95966 -12.87262 -12.69541 -12.61362 -12.40842 -12.20287 -11.93623 -11.84150 -11.81307 -11.60517 -11.51648 -11.19169 -11.05720 -10.93901 -10.70830 -10.63409 -9.43666 -8.85990 -8.63519 -6.38227 0.05736 0.93449 0.98057 1.10833 1.38112 1.49098 1.53008 1.81384 1.88521 2.05597 2.21278 2.66935 2.72126 3.26271 3.33445 3.60323 3.70040 3.79218 3.98687 4.35018 4.41288 4.42665 4.57652 4.72891 4.73507 4.86056 4.87628 4.94219 4.97416 5.00609 5.04998 5.05337 5.07100 5.09351 5.10613 5.26963 5.28275 5.36119 5.40794 5.56603 5.75580 5.89720 6.03294 6.06615 6.26335 6.31858 6.58553 6.62216 6.66704 6.85411 6.94223 6.99334 8.32336 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.002734 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.838831 B =10237.155562 C =11472.387427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.229 4.229 3 C 0.261 3.739 4 H 0.105 0.895 5 N -0.680 5.680 6 C 0.525 3.475 7 O -0.531 6.531 8 C 0.497 3.503 9 O -0.525 6.525 10 N -0.628 5.628 11 C 0.150 3.850 12 C -0.248 4.248 13 C -0.089 4.089 14 C -0.193 4.193 15 C 0.091 3.909 16 C -0.499 4.499 17 H 0.069 0.931 18 C 0.038 3.962 19 N -0.821 5.821 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.263 1.263 23 H -0.261 1.261 24 C -0.231 4.231 25 C -0.063 4.063 26 C -0.146 4.146 27 C -0.136 4.136 28 C -0.147 4.147 29 H 0.247 0.753 30 H 0.419 0.581 31 H 0.424 0.576 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.290 0.710 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.036 9.362 -16.144 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.230 4.230 3 C 0.158 3.842 4 H 0.123 0.877 5 N -0.334 5.334 6 C 0.305 3.695 7 O -0.407 6.407 8 C 0.278 3.722 9 O -0.401 6.401 10 N -0.274 5.274 11 C 0.057 3.943 12 C -0.269 4.269 13 C -0.108 4.108 14 C -0.213 4.213 15 C 0.088 3.912 16 C -0.529 4.529 17 H 0.087 0.913 18 C -0.177 4.177 19 N -0.446 5.446 20 Si 0.802 3.198 21 H -0.186 1.186 22 H -0.187 1.187 23 H -0.186 1.186 24 C -0.253 4.253 25 C -0.064 4.064 26 C -0.204 4.204 27 C -0.193 4.193 28 C -0.204 4.204 29 H 0.264 0.736 30 H 0.258 0.742 31 H 0.263 0.737 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.870 9.193 -16.082 20.990 hybrid contribution 0.374 0.128 0.648 0.760 sum -9.496 9.322 -15.434 20.378 Atomic orbital electron populations 1.25737 0.96700 0.99424 0.96898 1.23393 0.94900 1.01625 1.03103 1.18137 0.83940 0.99543 0.82618 0.87723 1.45861 1.64005 1.06834 1.16717 1.19777 0.78627 0.84435 0.86694 1.90746 1.49334 1.45178 1.55450 1.20453 0.79680 0.83739 0.88288 1.90806 1.48441 1.45135 1.55678 1.43042 1.58439 1.07975 1.17987 1.17513 0.93893 0.97393 0.85472 1.20480 1.06718 1.02157 0.97512 1.20834 0.95891 0.98707 0.95353 1.21374 0.99675 0.99293 1.00948 1.17803 0.91212 0.92199 0.89946 1.19744 1.11274 0.98664 1.23174 0.91321 1.26715 0.97834 0.96907 0.96279 1.69849 1.31211 1.13941 1.29645 0.85260 0.77761 0.78592 0.78146 1.18599 1.18688 1.18573 1.20940 1.02161 1.04158 0.98033 1.20792 0.96566 0.91241 0.97786 1.21937 0.92868 1.03471 1.02093 1.21824 1.01351 1.02940 0.93218 1.21957 1.01437 0.98834 0.98212 0.73647 0.74173 0.73710 0.85270 0.85672 0.87482 0.89920 0.89037 0.92037 0.90125 0.93299 0.92334 0.90265 0.91907 0.93198 0.90205 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 19.25 74.32 1.43 -1.55 16 2 C -0.23 -4.79 10.29 31.13 0.32 -4.47 16 3 C 0.26 5.33 1.72 43.19 0.07 5.40 16 4 H 0.11 2.29 7.58 -2.39 -0.02 2.28 16 5 N -0.68 -16.78 4.26 -452.65 -1.93 -18.71 16 6 C 0.52 16.12 7.83 87.24 0.68 16.80 16 7 O -0.53 -17.41 16.15 -3.30 -0.05 -17.47 16 8 C 0.50 18.36 7.61 87.24 0.66 19.03 16 9 O -0.52 -22.44 14.23 -3.33 -0.05 -22.49 16 10 N -0.63 -23.58 5.32 -304.97 -1.62 -25.20 16 11 C 0.15 6.81 6.25 38.16 0.24 7.04 16 12 C -0.25 -10.55 9.97 22.59 0.23 -10.32 16 13 C -0.09 -4.05 10.01 22.20 0.22 -3.82 16 14 C -0.19 -10.24 8.69 22.75 0.20 -10.04 16 15 C 0.09 5.14 5.57 -21.31 -0.12 5.02 16 16 C -0.50 -28.10 9.05 23.46 0.21 -27.89 16 17 H 0.07 3.83 7.90 -2.91 -0.02 3.80 16 18 C 0.04 1.95 5.16 85.25 0.44 2.39 16 19 N -0.82 -43.05 10.94 21.82 0.24 -42.81 16 20 Si 0.98 38.96 29.59 68.60 2.03 40.99 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 C -0.23 -12.21 8.39 22.86 0.19 -12.02 16 25 C -0.06 -0.94 0.59 -52.18 -0.03 -0.97 16 26 C -0.15 -2.15 8.32 71.98 0.60 -1.55 16 27 C -0.14 -1.58 8.22 71.98 0.59 -0.99 16 28 C -0.15 -2.11 8.05 71.98 0.58 -1.53 16 29 H 0.25 2.39 7.80 -4.41 -0.03 2.36 16 30 H 0.42 9.91 6.12 -92.70 -0.57 9.34 16 31 H 0.42 13.47 8.30 -92.71 -0.77 12.70 16 32 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 33 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 34 H 0.11 5.86 6.17 -2.91 -0.02 5.84 16 35 H 0.29 13.67 8.30 -92.71 -0.77 12.91 16 36 H 0.09 4.97 6.48 -2.91 -0.02 4.95 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.05 0.86 7.44 -2.39 -0.02 0.84 16 40 H 0.06 0.73 7.23 -2.39 -0.02 0.71 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.05 0.80 6.51 -2.38 -0.02 0.79 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 0.89 7.23 -2.39 -0.02 0.87 16 Total: -1.00 -67.18 380.64 4.83 -62.35 By element: Atomic # 1 Polarization: 43.12 SS G_CDS: -0.31 Total: 42.82 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 6.52 Total: -19.48 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -3.31 Total: -86.73 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.10 Total: -39.96 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -67.18 4.83 -62.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491795166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.624 kcal (2) G-P(sol) polarization free energy of solvation -67.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds