Wall clock time and date at job start Tue Mar 31 2020 15:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09007 * 109.47104 * 251.19907 * 3 2 1 5 5 N 1.46493 * 109.47613 * 11.20491 * 3 2 1 6 6 C 1.34781 * 119.99841 * 275.00108 * 5 3 2 7 7 O 1.21354 * 120.00341 * 359.97438 * 6 5 3 8 8 C 1.49356 * 119.99968 * 179.97438 * 6 5 3 9 9 O 1.21374 * 119.99767 * 0.02562 * 8 6 5 10 10 N 1.34780 * 120.00019 * 180.27598 * 8 6 5 11 11 C 1.39742 * 119.99698 * 174.61798 * 10 8 6 12 12 C 1.39343 * 119.95052 * 145.76194 * 11 10 8 13 13 C 1.38472 * 120.42504 * 179.97438 * 12 11 10 14 14 C 1.37692 * 120.32504 * 359.97438 * 13 12 11 15 15 C 1.40746 * 119.89990 * 359.97438 * 14 13 12 16 16 C 1.41412 * 120.21248 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00160 * 205.17915 * 16 15 14 18 18 C 1.39935 * 119.99532 * 25.18606 * 16 15 14 19 19 N 1.30831 * 119.99970 * 16.78935 * 18 16 15 20 20 Si 1.86802 * 120.00176 * 196.78838 * 18 16 15 21 21 H 1.48501 * 109.46993 * 94.96367 * 20 18 16 22 22 H 1.48496 * 109.47128 * 214.96506 * 20 18 16 23 23 H 1.48507 * 109.46787 * 334.96489 * 20 18 16 24 24 C 1.38301 * 119.95535 * 325.48362 * 11 10 8 25 25 C 1.53003 * 109.47267 * 131.20558 * 3 2 1 26 26 C 1.53005 * 109.46820 * 299.99863 * 25 3 2 27 27 C 1.53000 * 109.47048 * 59.99386 * 25 3 2 28 28 C 1.52997 * 109.47577 * 179.97438 * 25 3 2 29 29 H 4.18741 * 15.03921 * 359.97438 * 4 2 1 30 30 H 0.97003 * 120.00178 * 94.99799 * 5 3 2 31 31 H 0.96999 * 119.99751 * 354.61245 * 10 8 6 32 32 H 1.08001 * 119.78747 * 359.97438 * 12 11 10 33 33 H 1.08001 * 119.83647 * 180.02562 * 13 12 11 34 34 H 1.08003 * 120.05357 * 179.97438 * 14 13 12 35 35 H 0.96998 * 120.00302 * 180.02562 * 19 18 16 36 36 H 1.07998 * 120.16417 * 0.02562 * 24 11 10 37 37 H 1.09009 * 109.46978 * 60.00064 * 26 25 3 38 38 H 1.09004 * 109.47178 * 179.97438 * 26 25 3 39 39 H 1.08998 * 109.47227 * 299.99793 * 26 25 3 40 40 H 1.09000 * 109.47215 * 60.00310 * 27 25 3 41 41 H 1.09004 * 109.47223 * 180.02562 * 27 25 3 42 42 H 1.09005 * 109.47440 * 300.00061 * 27 25 3 43 43 H 1.08998 * 109.46864 * 59.99966 * 28 25 3 44 44 H 1.08997 * 109.47356 * 179.97438 * 28 25 3 45 45 H 1.09000 * 109.46859 * 299.99796 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.3320 0.9729 5 7 3.1351 -1.3539 -0.2684 6 6 3.2642 -2.2363 0.7422 7 8 2.9758 -1.9086 1.8745 8 6 3.7622 -3.6175 0.4686 9 8 4.0511 -3.9451 -0.6639 10 7 3.8861 -4.5016 1.4783 11 6 4.2438 -5.8252 1.2081 12 6 5.0363 -6.5300 2.1118 13 6 5.3961 -7.8421 1.8541 14 6 4.9737 -8.4653 0.7012 15 6 4.1718 -7.7665 -0.2205 16 6 3.7347 -8.3999 -1.4070 17 1 3.4890 -7.8079 -2.2761 18 6 3.6206 -9.7937 -1.4546 19 7 3.5932 -10.4862 -0.3449 20 14 3.5072 -10.6658 -3.1027 21 1 4.8598 -11.1162 -3.5185 22 1 2.6098 -11.8425 -2.9794 23 1 2.9619 -9.7318 -4.1204 24 6 3.8058 -6.4355 0.0468 25 6 3.1556 0.9512 -1.0853 26 6 2.6458 0.4861 -2.4509 27 6 2.6449 2.3659 -0.8050 28 6 4.6856 0.9524 -1.0849 29 1 -1.0499 0.0003 -0.0005 30 1 3.3659 -1.6158 -1.1734 31 1 3.7271 -4.2191 2.3925 32 1 5.3721 -6.0499 3.0190 33 1 6.0104 -8.3796 2.5614 34 1 5.2573 -9.4887 0.5045 35 1 3.5144 -11.4524 -0.3779 36 1 3.1881 -5.8916 -0.6524 37 1 1.5558 0.4856 -2.4509 38 1 3.0085 1.1635 -3.2241 39 1 3.0096 -0.5218 -2.6506 40 1 3.0080 2.6972 0.1678 41 1 3.0076 3.0430 -1.5785 42 1 1.5548 2.3654 -0.8051 43 1 5.0497 -0.0554 -1.2844 44 1 5.0486 1.6292 -1.8584 45 1 5.0484 1.2839 -0.1120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491795171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:43 Heat of formation + Delta-G solvation = -1.052545 kcal Electronic energy + Delta-G solvation = -27093.836706 eV Core-core repulsion = 23270.530771 eV Total energy + Delta-G solvation = -3823.305935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.81149 -39.34854 -37.97356 -37.13161 -34.78812 -33.83894 -33.04617 -32.68324 -29.88099 -28.64320 -27.72568 -27.54857 -27.32142 -25.36654 -24.09416 -21.34379 -20.89529 -20.23722 -19.64712 -18.77556 -18.08820 -17.38065 -16.69822 -15.92521 -15.76272 -15.49225 -15.16115 -14.95847 -14.67282 -14.59088 -14.09267 -14.00063 -13.76215 -13.33581 -13.00575 -12.90223 -12.53981 -12.36492 -12.21927 -12.00701 -11.75768 -11.70409 -11.50373 -11.27331 -11.22171 -11.18247 -11.16509 -10.94033 -10.70978 -10.48644 -10.27289 -10.12053 -9.70606 -9.61460 -9.46326 -9.12376 -9.03364 -7.50750 -7.01360 -6.75457 -4.37802 1.48788 2.13553 2.63121 2.73593 2.87241 2.97082 3.08115 3.12922 3.18621 3.52769 3.87946 3.94595 4.05813 4.31629 4.44634 4.60312 4.61797 4.70068 5.00465 5.19013 5.29503 5.36715 5.45333 5.55282 5.57739 5.65614 5.65930 5.76003 5.82127 5.96629 5.99373 6.06731 6.19810 6.34626 6.58035 6.80667 6.96824 7.00197 7.06733 7.21183 7.40317 7.42760 7.63434 7.75782 7.89174 8.02911 8.07098 8.14560 8.43230 8.63045 8.88822 8.92884 10.18392 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.002688 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.297491 B =10413.080604 C =11243.855357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.194 4.194 3 C 0.264 3.736 4 H 0.112 0.888 5 N -0.696 5.696 6 C 0.515 3.485 7 O -0.518 6.518 8 C 0.497 3.503 9 O -0.498 6.498 10 N -0.632 5.632 11 C 0.144 3.856 12 C -0.255 4.255 13 C -0.091 4.091 14 C -0.168 4.168 15 C 0.120 3.880 16 C -0.458 4.458 17 H 0.079 0.921 18 C 0.075 3.925 19 N -0.794 5.794 20 Si 0.910 3.090 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.261 1.261 24 C -0.208 4.208 25 C -0.070 4.070 26 C -0.148 4.148 27 C -0.140 4.140 28 C -0.145 4.145 29 H 0.218 0.782 30 H 0.416 0.584 31 H 0.411 0.589 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.280 0.720 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 19.878 -1.066 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.195 4.195 3 C 0.160 3.840 4 H 0.129 0.871 5 N -0.351 5.351 6 C 0.296 3.704 7 O -0.393 6.393 8 C 0.278 3.722 9 O -0.372 6.372 10 N -0.277 5.277 11 C 0.053 3.947 12 C -0.276 4.276 13 C -0.111 4.111 14 C -0.188 4.188 15 C 0.117 3.883 16 C -0.487 4.487 17 H 0.097 0.903 18 C -0.142 4.142 19 N -0.419 5.419 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.185 1.185 24 C -0.230 4.230 25 C -0.070 4.070 26 C -0.206 4.206 27 C -0.197 4.197 28 C -0.203 4.203 29 H 0.235 0.765 30 H 0.254 0.746 31 H 0.246 0.754 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.727 19.646 -0.987 19.747 hybrid contribution -0.396 -0.510 -0.525 0.832 sum -2.123 19.137 -1.512 19.313 Atomic orbital electron populations 1.24948 0.95866 0.98504 1.00788 1.23177 0.94397 1.01540 1.00376 1.17928 0.83616 0.81865 1.00615 0.87054 1.45844 1.65440 1.11764 1.12016 1.20399 0.78380 0.86418 0.85218 1.90743 1.48395 1.78632 1.21532 1.19892 0.80598 0.85628 0.86119 1.90815 1.46945 1.78304 1.21163 1.43130 1.65606 1.08977 1.10014 1.17443 0.98765 0.80893 0.97597 1.20070 1.09264 0.96703 1.01541 1.20478 0.99618 0.93669 0.97285 1.21392 1.01080 1.00837 0.95450 1.17476 0.88482 0.89998 0.92393 1.19597 1.39343 0.91279 0.98494 0.90265 1.25913 0.92355 0.97946 0.98008 1.69822 1.35280 1.08490 1.28340 0.86276 0.79006 0.78994 0.82327 1.19307 1.20302 1.18524 1.20963 1.06946 0.96934 0.98110 1.20797 0.96539 0.95096 0.94612 1.21960 1.01736 1.01492 0.95364 1.21847 1.01593 0.94234 1.02049 1.21915 0.93052 1.02816 1.02486 0.76531 0.74562 0.75352 0.88962 0.88786 0.86163 0.90870 0.87620 0.91944 0.91751 0.92239 0.92169 0.91782 0.92056 0.91870 0.91743 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 19.25 29.55 0.57 -1.31 16 2 C -0.19 -2.21 10.30 -37.12 -0.38 -2.59 16 3 C 0.26 2.80 1.72 -70.72 -0.12 2.68 16 4 H 0.11 1.23 7.58 -51.93 -0.39 0.84 16 5 N -0.70 -8.67 4.26 -57.01 -0.24 -8.92 16 6 C 0.51 7.99 7.83 -11.63 -0.09 7.90 16 7 O -0.52 -8.70 16.15 5.49 0.09 -8.61 16 8 C 0.50 9.15 7.61 -11.63 -0.09 9.06 16 9 O -0.50 -10.38 14.23 5.48 0.08 -10.30 16 10 N -0.63 -12.02 5.32 -10.34 -0.05 -12.07 16 11 C 0.14 3.29 6.25 -83.82 -0.52 2.76 16 12 C -0.25 -5.61 9.97 -39.08 -0.39 -6.00 16 13 C -0.09 -2.12 10.01 -39.69 -0.40 -2.51 16 14 C -0.17 -4.35 8.69 -38.83 -0.34 -4.69 16 15 C 0.12 3.24 5.57 -106.85 -0.59 2.65 16 16 C -0.46 -12.36 9.05 -37.74 -0.34 -12.70 16 17 H 0.08 2.10 7.90 -52.49 -0.41 1.69 16 18 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 19 N -0.79 -20.45 10.94 55.55 0.61 -19.85 16 20 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 C -0.21 -5.33 8.39 -38.67 -0.32 -5.65 16 25 C -0.07 -0.55 0.59 -154.51 -0.09 -0.64 16 26 C -0.15 -1.16 8.05 37.16 0.30 -0.86 16 27 C -0.14 -0.93 8.22 37.16 0.31 -0.63 16 28 C -0.15 -1.08 8.32 37.16 0.31 -0.77 16 29 H 0.22 1.50 7.80 -54.09 -0.42 1.08 16 30 H 0.42 4.90 6.12 -40.82 -0.25 4.65 16 31 H 0.41 6.77 8.30 -40.82 -0.34 6.43 16 32 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.12 3.19 6.16 -52.48 -0.32 2.87 16 35 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 36 H 0.11 2.75 6.48 -52.49 -0.34 2.41 16 37 H 0.06 0.52 7.23 -51.92 -0.38 0.15 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.50 6.51 -51.93 -0.34 0.16 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.44 7.23 -51.93 -0.38 0.06 16 43 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -30.42 380.65 -7.16 -37.58 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.05 Total: 14.15 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.29 Total: -11.51 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.31 Total: -40.84 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.17 Total: -18.91 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.42 -7.16 -37.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491795171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.525 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds