Wall clock time and date at job start Tue Mar 31 2020 15:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09007 * 109.47104 * 251.19907 * 3 2 1 5 5 N 1.46493 * 109.47613 * 11.20491 * 3 2 1 6 6 C 1.34781 * 119.99841 * 275.00108 * 5 3 2 7 7 O 1.21354 * 120.00341 * 359.97438 * 6 5 3 8 8 C 1.49356 * 119.99968 * 179.97438 * 6 5 3 9 9 O 1.21374 * 119.99767 * 0.02562 * 8 6 5 10 10 N 1.34780 * 120.00019 * 180.27598 * 8 6 5 11 11 C 1.39742 * 119.99698 * 174.61798 * 10 8 6 12 12 C 1.39343 * 119.95052 * 145.76194 * 11 10 8 13 13 C 1.38472 * 120.42504 * 179.97438 * 12 11 10 14 14 C 1.37692 * 120.32504 * 359.97438 * 13 12 11 15 15 C 1.40746 * 119.89990 * 359.97438 * 14 13 12 16 16 C 1.41412 * 120.21248 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00160 * 205.17915 * 16 15 14 18 18 C 1.39935 * 119.99532 * 25.18606 * 16 15 14 19 19 N 1.30831 * 119.99970 * 16.78935 * 18 16 15 20 20 Si 1.86802 * 120.00176 * 196.78838 * 18 16 15 21 21 H 1.48501 * 109.46993 * 94.96367 * 20 18 16 22 22 H 1.48496 * 109.47128 * 214.96506 * 20 18 16 23 23 H 1.48507 * 109.46787 * 334.96489 * 20 18 16 24 24 C 1.38301 * 119.95535 * 325.48362 * 11 10 8 25 25 C 1.53003 * 109.47267 * 131.20558 * 3 2 1 26 26 C 1.53005 * 109.46820 * 299.99863 * 25 3 2 27 27 C 1.53000 * 109.47048 * 59.99386 * 25 3 2 28 28 C 1.52997 * 109.47577 * 179.97438 * 25 3 2 29 29 H 4.18741 * 15.03921 * 359.97438 * 4 2 1 30 30 H 0.97003 * 120.00178 * 94.99799 * 5 3 2 31 31 H 0.96999 * 119.99751 * 354.61245 * 10 8 6 32 32 H 1.08001 * 119.78747 * 359.97438 * 12 11 10 33 33 H 1.08001 * 119.83647 * 180.02562 * 13 12 11 34 34 H 1.08003 * 120.05357 * 179.97438 * 14 13 12 35 35 H 0.96998 * 120.00302 * 180.02562 * 19 18 16 36 36 H 1.07998 * 120.16417 * 0.02562 * 24 11 10 37 37 H 1.09009 * 109.46978 * 60.00064 * 26 25 3 38 38 H 1.09004 * 109.47178 * 179.97438 * 26 25 3 39 39 H 1.08998 * 109.47227 * 299.99793 * 26 25 3 40 40 H 1.09000 * 109.47215 * 60.00310 * 27 25 3 41 41 H 1.09004 * 109.47223 * 180.02562 * 27 25 3 42 42 H 1.09005 * 109.47440 * 300.00061 * 27 25 3 43 43 H 1.08998 * 109.46864 * 59.99966 * 28 25 3 44 44 H 1.08997 * 109.47356 * 179.97438 * 28 25 3 45 45 H 1.09000 * 109.46859 * 299.99796 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.3320 0.9729 5 7 3.1351 -1.3539 -0.2684 6 6 3.2642 -2.2363 0.7422 7 8 2.9758 -1.9086 1.8745 8 6 3.7622 -3.6175 0.4686 9 8 4.0511 -3.9451 -0.6639 10 7 3.8861 -4.5016 1.4783 11 6 4.2438 -5.8252 1.2081 12 6 5.0363 -6.5300 2.1118 13 6 5.3961 -7.8421 1.8541 14 6 4.9737 -8.4653 0.7012 15 6 4.1718 -7.7665 -0.2205 16 6 3.7347 -8.3999 -1.4070 17 1 3.4890 -7.8079 -2.2761 18 6 3.6206 -9.7937 -1.4546 19 7 3.5932 -10.4862 -0.3449 20 14 3.5072 -10.6658 -3.1027 21 1 4.8598 -11.1162 -3.5185 22 1 2.6098 -11.8425 -2.9794 23 1 2.9619 -9.7318 -4.1204 24 6 3.8058 -6.4355 0.0468 25 6 3.1556 0.9512 -1.0853 26 6 2.6458 0.4861 -2.4509 27 6 2.6449 2.3659 -0.8050 28 6 4.6856 0.9524 -1.0849 29 1 -1.0499 0.0003 -0.0005 30 1 3.3659 -1.6158 -1.1734 31 1 3.7271 -4.2191 2.3925 32 1 5.3721 -6.0499 3.0190 33 1 6.0104 -8.3796 2.5614 34 1 5.2573 -9.4887 0.5045 35 1 3.5144 -11.4524 -0.3779 36 1 3.1881 -5.8916 -0.6524 37 1 1.5558 0.4856 -2.4509 38 1 3.0085 1.1635 -3.2241 39 1 3.0096 -0.5218 -2.6506 40 1 3.0080 2.6972 0.1678 41 1 3.0076 3.0430 -1.5785 42 1 1.5548 2.3654 -0.8051 43 1 5.0497 -0.0554 -1.2844 44 1 5.0486 1.6292 -1.8584 45 1 5.0484 1.2839 -0.1120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491795171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:42 Heat of formation + Delta-G solvation = -18.933374 kcal Electronic energy + Delta-G solvation = -27094.612077 eV Core-core repulsion = 23270.530771 eV Total energy + Delta-G solvation = -3824.081306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.14388 -40.64356 -39.17078 -38.77099 -36.45720 -35.10928 -34.61503 -33.57388 -31.79984 -30.37123 -28.48455 -28.22808 -28.12835 -27.29795 -25.47759 -23.05117 -22.63412 -21.45441 -20.68065 -20.05900 -19.53422 -18.68597 -17.98043 -17.46125 -17.10107 -16.87659 -16.64722 -16.48038 -15.96755 -15.71653 -15.31722 -15.05219 -14.79329 -14.73273 -14.66300 -14.12688 -13.99211 -13.58297 -13.13357 -13.06803 -13.03262 -12.95915 -12.88030 -12.70752 -12.60765 -12.40850 -12.19585 -11.93857 -11.83778 -11.80821 -11.60241 -11.51949 -11.19941 -11.06262 -10.94792 -10.70408 -10.63905 -9.44065 -8.86174 -8.64176 -6.38897 0.06302 0.89871 0.95871 1.14650 1.37598 1.50414 1.51271 1.80209 1.87510 2.05263 2.20881 2.66862 2.71262 3.26095 3.33326 3.60502 3.69571 3.79450 3.98999 4.35364 4.41537 4.42583 4.57735 4.73539 4.74045 4.86581 4.87479 4.94443 4.97175 5.01085 5.04795 5.05362 5.06850 5.09550 5.10470 5.27305 5.28164 5.36453 5.41729 5.56482 5.75282 5.89636 6.03155 6.06376 6.26124 6.31778 6.58056 6.61655 6.66509 6.85247 6.94012 6.98988 8.31872 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.002688 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.297491 B =10413.080604 C =11243.855357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.229 4.229 3 C 0.261 3.739 4 H 0.108 0.892 5 N -0.681 5.681 6 C 0.525 3.475 7 O -0.530 6.530 8 C 0.496 3.504 9 O -0.525 6.525 10 N -0.628 5.628 11 C 0.150 3.850 12 C -0.246 4.246 13 C -0.089 4.089 14 C -0.193 4.193 15 C 0.091 3.909 16 C -0.499 4.499 17 H 0.067 0.933 18 C 0.038 3.962 19 N -0.821 5.821 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.264 1.264 23 H -0.263 1.263 24 C -0.232 4.232 25 C -0.063 4.063 26 C -0.148 4.148 27 C -0.136 4.136 28 C -0.145 4.145 29 H 0.245 0.755 30 H 0.419 0.581 31 H 0.425 0.575 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.290 0.710 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 21.222 -0.833 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.230 4.230 3 C 0.158 3.842 4 H 0.125 0.875 5 N -0.334 5.334 6 C 0.305 3.695 7 O -0.407 6.407 8 C 0.278 3.722 9 O -0.401 6.401 10 N -0.274 5.274 11 C 0.057 3.943 12 C -0.267 4.267 13 C -0.108 4.108 14 C -0.212 4.212 15 C 0.088 3.912 16 C -0.528 4.528 17 H 0.085 0.915 18 C -0.178 4.178 19 N -0.447 5.447 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.188 1.188 23 H -0.187 1.187 24 C -0.254 4.254 25 C -0.064 4.064 26 C -0.205 4.205 27 C -0.194 4.194 28 C -0.202 4.202 29 H 0.262 0.738 30 H 0.258 0.742 31 H 0.263 0.737 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.704 21.038 -0.737 21.120 hybrid contribution -0.430 -0.798 -0.518 1.044 sum -2.134 20.240 -1.254 20.391 Atomic orbital electron populations 1.25742 0.96769 0.97013 0.99584 1.23465 0.95022 1.02902 1.01583 1.18170 0.83717 0.80809 1.01520 0.87473 1.45866 1.64001 1.12128 1.11426 1.19772 0.78701 0.85399 0.85643 1.90742 1.49460 1.78504 1.21966 1.20458 0.79551 0.86736 0.85431 1.90806 1.47839 1.79135 1.22289 1.43039 1.65597 1.07754 1.11050 1.17509 0.97809 0.82359 0.96573 1.20485 1.07652 0.96264 1.02301 1.20840 0.99023 0.94247 0.96646 1.21376 1.02385 1.00618 0.96868 1.17807 0.89283 0.90945 0.93157 1.19767 1.41790 0.92679 0.98573 0.91468 1.26714 0.91331 0.97873 1.01835 1.69852 1.35325 1.09229 1.30261 0.85193 0.79450 0.77797 0.77268 1.18405 1.18827 1.18709 1.20930 1.08173 0.96886 0.99386 1.20795 0.96802 0.95154 0.93602 1.21966 1.01346 1.01384 0.95831 1.21830 1.01267 0.93401 1.02867 1.21926 0.92569 1.02480 1.03256 0.73821 0.74178 0.73684 0.85133 0.85598 0.87468 0.89927 0.89262 0.92549 0.90122 0.93201 0.91768 0.90219 0.92553 0.93155 0.90113 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 19.25 74.32 1.43 -1.86 16 2 C -0.23 -4.98 10.30 31.12 0.32 -4.66 16 3 C 0.26 5.32 1.72 43.19 0.07 5.39 16 4 H 0.11 2.29 7.58 -2.38 -0.02 2.27 16 5 N -0.68 -16.75 4.26 -452.65 -1.93 -18.68 16 6 C 0.52 16.09 7.83 87.24 0.68 16.77 16 7 O -0.53 -17.35 16.15 -3.26 -0.05 -17.41 16 8 C 0.50 18.35 7.61 87.24 0.66 19.01 16 9 O -0.53 -22.47 14.23 -3.32 -0.05 -22.51 16 10 N -0.63 -23.54 5.32 -304.98 -1.62 -25.16 16 11 C 0.15 6.81 6.25 38.16 0.24 7.05 16 12 C -0.25 -10.42 9.97 22.59 0.23 -10.19 16 13 C -0.09 -4.02 10.01 22.20 0.22 -3.79 16 14 C -0.19 -10.21 8.69 22.75 0.20 -10.01 16 15 C 0.09 5.13 5.57 -21.31 -0.12 5.01 16 16 C -0.50 -28.22 9.05 23.46 0.21 -28.01 16 17 H 0.07 3.79 7.90 -2.91 -0.02 3.77 16 18 C 0.04 1.94 5.16 85.25 0.44 2.38 16 19 N -0.82 -43.16 10.94 21.82 0.24 -42.92 16 20 Si 0.98 39.18 29.59 68.60 2.03 41.21 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 C -0.23 -12.31 8.39 22.86 0.19 -12.12 16 25 C -0.06 -0.91 0.59 -52.18 -0.03 -0.94 16 26 C -0.15 -2.15 8.05 71.98 0.58 -1.57 16 27 C -0.14 -1.56 8.22 71.98 0.59 -0.96 16 28 C -0.15 -1.94 8.32 71.98 0.60 -1.34 16 29 H 0.25 2.81 7.80 -4.42 -0.03 2.77 16 30 H 0.42 9.90 6.12 -92.71 -0.57 9.33 16 31 H 0.42 13.41 8.30 -92.71 -0.77 12.65 16 32 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 33 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 34 H 0.11 5.87 6.16 -2.91 -0.02 5.85 16 35 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 36 H 0.09 4.91 6.48 -2.91 -0.02 4.89 16 37 H 0.06 0.89 7.23 -2.38 -0.02 0.87 16 38 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.05 0.81 6.51 -2.39 -0.02 0.79 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.06 0.71 7.23 -2.38 -0.02 0.70 16 43 H 0.05 0.80 7.45 -2.39 -0.02 0.79 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -67.61 380.65 4.83 -62.78 By element: Atomic # 1 Polarization: 42.85 SS G_CDS: -0.31 Total: 42.54 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 6.52 Total: -19.84 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -3.31 Total: -86.76 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.10 Total: -39.92 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -67.61 4.83 -62.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491795171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.846 kcal (2) G-P(sol) polarization free energy of solvation -67.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds