Wall clock time and date at job start Tue Mar 31 2020 15:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33425 * 119.99679 * 2 1 4 4 C 1.46330 * 119.99663 * 179.97438 * 3 2 1 5 5 C 1.35214 * 119.99973 * 185.54742 * 4 3 2 6 6 C 1.46202 * 119.99761 * 354.55422 * 5 4 3 7 7 O 1.21721 * 120.00356 * 5.70690 * 6 5 4 8 8 N 1.34772 * 120.00011 * 185.69937 * 6 5 4 9 9 C 1.39308 * 120.00411 * 184.39404 * 8 6 5 10 10 C 1.39170 * 119.92680 * 324.77804 * 9 8 6 11 11 C 1.37654 * 120.06848 * 180.25087 * 10 9 8 12 12 C 1.39767 * 119.92760 * 359.49507 * 11 10 9 13 13 C 1.47572 * 120.07020 * 180.25758 * 12 11 10 14 14 O 1.21588 * 120.00040 * 180.22730 * 13 12 11 15 15 N 1.34775 * 120.00118 * 0.22061 * 13 12 11 16 16 C 1.46506 * 120.00187 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47131 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47084 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99959 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00164 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99931 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00111 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47090 * 60.00210 * 22 20 18 24 24 H 1.48503 * 109.47263 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47210 * 299.99885 * 22 20 18 26 26 C 1.39762 * 119.85672 * 0.47996 * 12 11 10 27 27 C 1.37654 * 119.93149 * 359.77199 * 26 12 11 28 28 H 1.08999 * 109.47028 * 299.99942 * 1 2 3 29 29 H 1.08998 * 109.47251 * 59.99692 * 1 2 3 30 30 H 1.08997 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.00287 * 179.97438 * 2 1 3 32 32 H 1.07997 * 120.00141 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.99742 * 5.54958 * 4 3 2 34 34 H 1.07995 * 119.99995 * 174.55651 * 5 4 3 35 35 H 0.97000 * 120.00212 * 4.39861 * 8 6 5 36 36 H 1.07999 * 119.96667 * 359.97438 * 10 9 8 37 37 H 1.07995 * 120.03359 * 179.74430 * 11 10 9 38 38 H 0.97004 * 119.99955 * 0.02562 * 15 13 12 39 39 H 1.09001 * 109.46980 * 300.00295 * 16 15 13 40 40 H 1.08994 * 109.46963 * 60.00370 * 16 15 13 41 41 H 1.08994 * 109.47102 * 300.00585 * 17 16 15 42 42 H 1.09002 * 109.46790 * 60.00581 * 17 16 15 43 43 H 0.97004 * 120.00305 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.03358 * 179.75315 * 26 12 11 45 45 H 1.07999 * 119.96388 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1741 1.1555 0.0000 4 6 3.6374 1.1555 0.0006 5 6 4.3134 2.3211 0.1138 6 6 3.5873 3.5900 0.1157 7 8 2.3701 3.5948 0.1203 8 7 4.2657 4.7546 0.1126 9 6 3.5773 5.9620 0.2069 10 6 2.3318 6.1002 -0.3984 11 6 1.6513 7.2937 -0.3115 12 6 2.2078 8.3638 0.3946 13 6 1.4785 9.6428 0.4946 14 8 1.9657 10.5743 1.1056 15 7 0.2725 9.7785 -0.0915 16 6 -0.4513 11.0484 0.0073 17 6 -1.7826 10.9360 -0.7383 18 6 -2.5274 12.2421 -0.6361 19 1 -2.0943 13.0697 -0.0940 20 6 -3.7613 12.3808 -1.2356 21 7 -4.2884 11.3732 -1.8961 22 14 -4.6841 14.0000 -1.1095 23 1 -3.8679 15.0834 -1.7139 24 1 -5.9764 13.8909 -1.8331 25 1 -4.9422 14.3128 0.3191 26 6 3.4586 8.2215 1.0017 27 6 4.1363 7.0271 0.9067 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 2.0471 -0.9352 0.0004 32 1 1.6341 2.0908 0.0004 33 1 4.1774 0.2246 -0.0895 34 1 5.3897 2.3146 0.2027 35 1 5.2333 4.7521 0.0447 36 1 1.9006 5.2717 -0.9407 37 1 0.6867 7.4016 -0.7849 38 1 -0.1163 9.0353 -0.5788 39 1 -0.6408 11.2780 1.0559 40 1 0.1479 11.8435 -0.4363 41 1 -1.5936 10.7061 -1.7868 42 1 -2.3817 10.1409 -0.2943 43 1 -5.1566 11.4706 -2.3176 44 1 3.8931 9.0479 1.5446 45 1 5.1031 6.9167 1.3753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492782606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:21 Heat of formation + Delta-G solvation = -11.009806 kcal Electronic energy + Delta-G solvation = -25607.122569 eV Core-core repulsion = 21783.384855 eV Total energy + Delta-G solvation = -3823.737714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.98093 -39.65621 -38.13393 -36.02745 -34.95039 -34.86376 -32.89381 -32.76983 -31.17157 -30.44788 -29.17795 -27.50301 -25.19158 -24.06368 -23.02230 -22.29490 -20.99323 -20.38772 -20.21624 -20.14941 -18.00575 -17.42073 -17.34970 -16.38450 -15.79808 -15.36073 -15.04398 -14.88157 -14.80649 -14.74620 -14.42184 -14.23221 -13.82493 -13.60934 -13.43696 -13.35437 -13.25646 -13.03090 -12.59835 -12.52398 -12.26227 -11.95759 -11.82611 -11.39052 -11.18056 -11.14721 -11.00329 -10.64261 -10.52416 -10.29234 -9.86334 -9.66358 -9.45546 -9.20496 -9.08793 -8.78731 -8.55740 -8.38822 -8.20570 -6.06969 -4.09844 0.25413 0.82713 1.30132 2.23602 2.68813 2.91577 3.16640 3.33103 3.36727 3.39694 3.70428 3.95028 4.28273 4.40430 4.43885 4.69259 4.75906 4.84263 4.88565 5.02694 5.05642 5.21980 5.22415 5.29894 5.33627 5.33933 5.35693 5.49884 5.71927 5.83670 5.95689 6.04044 6.10670 6.22748 6.28872 6.37606 6.41836 6.43310 6.56478 6.76148 6.81430 6.93667 7.01968 7.53960 7.64091 7.80899 7.90996 8.03130 8.29994 8.65610 8.95815 9.54736 11.04613 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.002047 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.458579 B =13677.100243 C =15648.958087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.123 4.123 3 C -0.192 4.192 4 C -0.012 4.012 5 C -0.232 4.232 6 C 0.548 3.452 7 O -0.515 6.515 8 N -0.668 5.668 9 C 0.160 3.840 10 C -0.128 4.128 11 C -0.067 4.067 12 C -0.141 4.141 13 C 0.549 3.451 14 O -0.550 6.550 15 N -0.716 5.716 16 C 0.121 3.879 17 C 0.012 3.988 18 C -0.522 4.522 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.043 4.043 27 C -0.155 4.155 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.175 0.825 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.412 0.588 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.397 0.603 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.263 0.737 44 H 0.140 0.860 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.984 -24.623 2.649 31.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.141 4.141 3 C -0.209 4.209 4 C -0.032 4.032 5 C -0.253 4.253 6 C 0.341 3.659 7 O -0.394 6.394 8 N -0.311 5.311 9 C 0.066 3.934 10 C -0.148 4.148 11 C -0.087 4.087 12 C -0.145 4.145 13 C 0.336 3.664 14 O -0.430 6.430 15 N -0.366 5.366 16 C -0.001 4.001 17 C -0.025 4.025 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 C -0.063 4.063 27 C -0.175 4.175 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.191 0.809 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.248 0.752 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.232 0.768 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.157 0.843 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 19.300 -24.034 2.986 30.968 hybrid contribution -0.073 0.302 -0.248 0.398 sum 19.226 -23.731 2.738 30.664 Atomic orbital electron populations 1.20912 0.92562 1.02424 1.02826 1.23807 0.96711 0.97430 0.96155 1.23476 0.93615 1.01927 1.01909 1.22682 0.94558 0.97033 0.88911 1.22749 1.00288 0.91653 1.10585 1.18602 0.87494 0.84195 0.75599 1.90535 1.13718 1.86163 1.48982 1.43329 1.10822 1.04310 1.72685 1.17876 0.93684 0.85416 0.96458 1.21194 0.94778 0.98235 1.00577 1.21313 0.99398 0.91735 0.96209 1.20149 0.96725 0.94743 1.02900 1.18199 0.81567 0.87206 0.79466 1.90740 1.68088 1.41199 1.42959 1.46283 1.18908 1.17438 1.53968 1.21761 0.94339 0.82897 1.01098 1.19329 0.89485 0.98222 0.95510 1.21010 1.02936 0.98045 1.34053 0.92268 1.24998 0.97436 0.96836 0.95050 1.69944 1.17805 1.30878 1.34663 0.86564 0.78895 0.83706 0.78313 1.20117 1.21261 1.20112 1.21047 0.92635 0.96830 0.95784 1.20831 1.01814 0.93276 1.01613 0.90981 0.90945 0.91971 0.87748 0.80884 0.85547 0.84940 0.75183 0.83812 0.84938 0.76823 0.92386 0.92380 0.95896 0.95885 0.92791 0.84257 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.86 10.19 36.01 0.37 -0.49 16 2 C -0.12 -0.86 9.99 -35.99 -0.36 -1.22 16 3 C -0.19 -1.63 8.80 -38.01 -0.33 -1.96 16 4 C -0.01 -0.08 9.89 -37.41 -0.37 -0.45 16 5 C -0.23 -1.41 10.07 -37.46 -0.38 -1.79 16 6 C 0.55 4.96 7.53 -13.07 -0.10 4.86 16 7 O -0.52 -6.29 10.37 5.17 0.05 -6.23 16 8 N -0.67 -5.10 5.30 -11.18 -0.06 -5.16 16 9 C 0.16 1.68 6.29 -83.77 -0.53 1.15 16 10 C -0.13 -1.55 8.66 -39.45 -0.34 -1.89 16 11 C -0.07 -0.87 9.53 -39.22 -0.37 -1.25 16 12 C -0.14 -2.08 5.88 -104.95 -0.62 -2.70 16 13 C 0.55 10.05 7.76 -12.45 -0.10 9.95 16 14 O -0.55 -11.81 16.34 5.29 0.09 -11.73 16 15 N -0.72 -13.23 5.51 -61.33 -0.34 -13.57 16 16 C 0.12 2.65 5.61 -4.04 -0.02 2.63 16 17 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 18 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 19 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 22 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.04 -0.55 9.58 -39.23 -0.38 -0.93 16 27 C -0.16 -1.56 9.95 -39.45 -0.39 -1.95 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.54 8.05 -52.49 -0.42 0.11 16 32 H 0.17 1.91 4.58 -55.16 -0.25 1.66 16 33 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 35 H 0.41 1.67 8.80 -40.82 -0.36 1.31 16 36 H 0.14 1.77 6.22 -52.49 -0.33 1.44 16 37 H 0.13 1.56 6.39 -52.49 -0.34 1.23 16 38 H 0.40 6.41 6.49 -40.82 -0.27 6.15 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.14 1.75 7.64 -52.49 -0.40 1.35 16 45 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -34.45 386.43 -9.32 -43.77 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.13 Total: 5.41 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -4.47 Total: -9.26 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.34 Total: -44.36 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.14 Total: -17.96 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.45 -9.32 -43.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492782606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.762 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds