Wall clock time and date at job start Tue Mar 31 2020 15:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33425 * 119.99679 * 2 1 4 4 C 1.46330 * 119.99663 * 179.97438 * 3 2 1 5 5 C 1.35214 * 119.99973 * 185.54742 * 4 3 2 6 6 C 1.46202 * 119.99761 * 354.55422 * 5 4 3 7 7 O 1.21721 * 120.00356 * 5.70690 * 6 5 4 8 8 N 1.34772 * 120.00011 * 185.69937 * 6 5 4 9 9 C 1.39308 * 120.00411 * 184.39404 * 8 6 5 10 10 C 1.39170 * 119.92680 * 324.77804 * 9 8 6 11 11 C 1.37654 * 120.06848 * 180.25087 * 10 9 8 12 12 C 1.39767 * 119.92760 * 359.49507 * 11 10 9 13 13 C 1.47572 * 120.07020 * 180.25758 * 12 11 10 14 14 O 1.21588 * 120.00040 * 180.22730 * 13 12 11 15 15 N 1.34775 * 120.00118 * 0.22061 * 13 12 11 16 16 C 1.46506 * 120.00187 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47131 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47084 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99959 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00164 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99931 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00111 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47090 * 60.00210 * 22 20 18 24 24 H 1.48503 * 109.47263 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47210 * 299.99885 * 22 20 18 26 26 C 1.39762 * 119.85672 * 0.47996 * 12 11 10 27 27 C 1.37654 * 119.93149 * 359.77199 * 26 12 11 28 28 H 1.08999 * 109.47028 * 299.99942 * 1 2 3 29 29 H 1.08998 * 109.47251 * 59.99692 * 1 2 3 30 30 H 1.08997 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.00287 * 179.97438 * 2 1 3 32 32 H 1.07997 * 120.00141 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.99742 * 5.54958 * 4 3 2 34 34 H 1.07995 * 119.99995 * 174.55651 * 5 4 3 35 35 H 0.97000 * 120.00212 * 4.39861 * 8 6 5 36 36 H 1.07999 * 119.96667 * 359.97438 * 10 9 8 37 37 H 1.07995 * 120.03359 * 179.74430 * 11 10 9 38 38 H 0.97004 * 119.99955 * 0.02562 * 15 13 12 39 39 H 1.09001 * 109.46980 * 300.00295 * 16 15 13 40 40 H 1.08994 * 109.46963 * 60.00370 * 16 15 13 41 41 H 1.08994 * 109.47102 * 300.00585 * 17 16 15 42 42 H 1.09002 * 109.46790 * 60.00581 * 17 16 15 43 43 H 0.97004 * 120.00305 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.03358 * 179.75315 * 26 12 11 45 45 H 1.07999 * 119.96388 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1741 1.1555 0.0000 4 6 3.6374 1.1555 0.0006 5 6 4.3134 2.3211 0.1138 6 6 3.5873 3.5900 0.1157 7 8 2.3701 3.5948 0.1203 8 7 4.2657 4.7546 0.1126 9 6 3.5773 5.9620 0.2069 10 6 2.3318 6.1002 -0.3984 11 6 1.6513 7.2937 -0.3115 12 6 2.2078 8.3638 0.3946 13 6 1.4785 9.6428 0.4946 14 8 1.9657 10.5743 1.1056 15 7 0.2725 9.7785 -0.0915 16 6 -0.4513 11.0484 0.0073 17 6 -1.7826 10.9360 -0.7383 18 6 -2.5274 12.2421 -0.6361 19 1 -2.0943 13.0697 -0.0940 20 6 -3.7613 12.3808 -1.2356 21 7 -4.2884 11.3732 -1.8961 22 14 -4.6841 14.0000 -1.1095 23 1 -3.8679 15.0834 -1.7139 24 1 -5.9764 13.8909 -1.8331 25 1 -4.9422 14.3128 0.3191 26 6 3.4586 8.2215 1.0017 27 6 4.1363 7.0271 0.9067 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 2.0471 -0.9352 0.0004 32 1 1.6341 2.0908 0.0004 33 1 4.1774 0.2246 -0.0895 34 1 5.3897 2.3146 0.2027 35 1 5.2333 4.7521 0.0447 36 1 1.9006 5.2717 -0.9407 37 1 0.6867 7.4016 -0.7849 38 1 -0.1163 9.0353 -0.5788 39 1 -0.6408 11.2780 1.0559 40 1 0.1479 11.8435 -0.4363 41 1 -1.5936 10.7061 -1.7868 42 1 -2.3817 10.1409 -0.2943 43 1 -5.1566 11.4706 -2.3176 44 1 3.8931 9.0479 1.5446 45 1 5.1031 6.9167 1.3753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492782606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:19 Heat of formation + Delta-G solvation = -32.952767 kcal Electronic energy + Delta-G solvation = -25608.074087 eV Core-core repulsion = 21783.384855 eV Total energy + Delta-G solvation = -3824.689232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.79465 -40.89995 -39.20675 -36.70825 -36.59602 -35.72612 -34.86398 -33.33046 -32.32731 -31.71425 -30.61431 -28.14629 -26.89719 -25.19192 -23.97806 -23.35669 -22.71202 -21.47550 -20.92221 -20.87410 -19.09539 -18.61962 -18.28093 -18.04361 -16.99804 -16.51507 -16.50362 -16.21032 -15.91980 -15.76036 -15.38766 -15.23365 -14.93680 -14.79912 -14.43360 -14.28965 -14.17749 -14.08995 -13.73852 -13.66266 -13.47141 -13.23986 -12.93549 -12.56773 -12.50802 -12.37212 -12.28527 -12.22821 -11.70381 -11.67927 -11.50072 -11.38783 -10.99741 -10.61389 -10.37737 -10.10978 -10.01172 -9.40512 -9.07815 -8.24726 -6.35701 -0.41084 -0.04897 0.35759 1.41089 1.43958 1.51869 1.56269 1.83171 2.06415 2.20887 2.44065 2.44166 2.85288 3.09706 3.68550 3.74186 3.86857 3.92739 3.98516 4.26071 4.26992 4.37249 4.44792 4.46584 4.49330 4.52876 4.61916 4.77393 4.78847 4.82034 4.95790 4.98723 5.09397 5.19743 5.21281 5.23061 5.33636 5.37014 5.46778 5.50681 5.55202 5.76508 5.82450 5.90421 6.01575 6.14161 6.43413 6.55302 6.77044 7.17505 7.18169 7.33462 8.87068 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.002047 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.458579 B =13677.100243 C =15648.958087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C -0.219 4.219 4 C -0.013 4.013 5 C -0.231 4.231 6 C 0.538 3.462 7 O -0.553 6.553 8 N -0.654 5.654 9 C 0.172 3.828 10 C -0.140 4.140 11 C -0.068 4.068 12 C -0.166 4.166 13 C 0.550 3.450 14 O -0.587 6.587 15 N -0.714 5.714 16 C 0.140 3.860 17 C 0.022 3.978 18 C -0.548 4.548 19 H 0.060 0.940 20 C 0.005 3.995 21 N -0.927 5.927 22 Si 0.967 3.033 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.268 1.268 26 C -0.046 4.046 27 C -0.140 4.140 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.432 0.568 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.407 0.593 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.009 0.991 42 H 0.007 0.993 43 H 0.266 0.734 44 H 0.139 0.861 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.259 -26.337 2.989 34.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 C -0.237 4.237 4 C -0.032 4.032 5 C -0.251 4.251 6 C 0.332 3.668 7 O -0.434 6.434 8 N -0.299 5.299 9 C 0.076 3.924 10 C -0.160 4.160 11 C -0.087 4.087 12 C -0.170 4.170 13 C 0.340 3.660 14 O -0.469 6.469 15 N -0.365 5.365 16 C 0.016 3.984 17 C -0.015 4.015 18 C -0.586 4.586 19 H 0.079 0.921 20 C -0.193 4.193 21 N -0.566 5.566 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.193 1.193 26 C -0.066 4.066 27 C -0.160 4.160 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.179 0.821 34 H 0.190 0.810 35 H 0.273 0.727 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.244 0.756 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.157 0.843 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 21.620 -25.781 3.316 33.809 hybrid contribution -0.763 0.674 -0.363 1.081 sum 20.857 -25.107 2.953 32.774 Atomic orbital electron populations 1.20969 0.92907 1.03292 1.02055 1.24029 0.96727 0.98033 0.94566 1.23434 0.95353 1.01199 1.03665 1.22969 0.93375 0.98638 0.88251 1.22965 1.01918 0.89749 1.10499 1.19301 0.87308 0.85387 0.74792 1.90570 1.15587 1.86737 1.50499 1.43291 1.11807 1.02990 1.71833 1.18006 0.93019 0.86535 0.94862 1.21231 0.95848 0.97595 1.01328 1.21317 0.99642 0.91731 0.96012 1.19888 0.97878 0.93355 1.05868 1.18727 0.81003 0.88154 0.78165 1.90705 1.68842 1.42794 1.44561 1.46114 1.19216 1.16627 1.54534 1.21288 0.92958 0.84344 0.99775 1.19141 0.90692 0.96867 0.94831 1.21431 1.03751 0.99080 1.34345 0.92131 1.25911 0.98335 1.00610 0.94484 1.70057 1.18304 1.32961 1.35307 0.85464 0.77569 0.79153 0.78651 1.19235 1.20557 1.19311 1.21179 0.91982 0.97999 0.95439 1.21107 1.02833 0.91601 1.00503 0.91878 0.91687 0.90244 0.85196 0.83898 0.82131 0.81018 0.72735 0.84326 0.84727 0.75578 0.93292 0.93127 0.97291 0.97433 0.92509 0.84282 0.81214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 10.19 71.24 0.73 -1.03 16 2 C -0.12 -1.47 9.99 24.60 0.25 -1.23 16 3 C -0.22 -3.58 8.80 23.29 0.20 -3.37 16 4 C -0.01 -0.13 9.89 23.68 0.23 0.10 16 5 C -0.23 -2.12 10.07 23.64 0.24 -1.88 16 6 C 0.54 8.85 7.53 86.31 0.65 9.50 16 7 O -0.55 -13.61 10.37 -4.41 -0.05 -13.66 16 8 N -0.65 -8.28 5.30 -307.49 -1.63 -9.91 16 9 C 0.17 3.29 6.29 38.40 0.24 3.53 16 10 C -0.14 -3.37 8.66 22.36 0.19 -3.18 16 11 C -0.07 -1.80 9.53 22.50 0.21 -1.58 16 12 C -0.17 -4.95 5.88 -20.08 -0.12 -5.07 16 13 C 0.55 20.80 7.76 86.71 0.67 21.47 16 14 O -0.59 -25.95 16.34 -3.99 -0.07 -26.01 16 15 N -0.71 -27.48 5.51 -466.22 -2.57 -30.05 16 16 C 0.14 6.36 5.61 86.38 0.48 6.84 16 17 C 0.02 1.16 5.09 29.85 0.15 1.31 16 18 C -0.55 -31.36 9.11 25.60 0.23 -31.13 16 19 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 20 C 0.01 0.31 5.46 84.65 0.46 0.77 16 21 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 22 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 26 C -0.05 -1.14 9.58 22.50 0.22 -0.92 16 27 C -0.14 -2.46 9.95 22.35 0.22 -2.24 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.13 0.96 8.05 -2.91 -0.02 0.94 16 32 H 0.14 3.32 4.58 -45.20 -0.21 3.12 16 33 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 34 H 0.17 0.14 8.06 -2.91 -0.02 0.12 16 35 H 0.43 1.82 8.80 -92.71 -0.82 1.01 16 36 H 0.14 3.51 6.22 -2.91 -0.02 3.50 16 37 H 0.13 3.35 6.39 -2.91 -0.02 3.33 16 38 H 0.41 13.82 6.49 -92.71 -0.60 13.22 16 39 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.14 3.41 7.64 -2.91 -0.02 3.38 16 45 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -77.13 386.43 2.69 -74.44 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.59 Total: 22.04 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 5.27 Total: -8.10 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -3.91 Total: -95.15 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.11 Total: -39.67 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -77.13 2.69 -74.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492782606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.484 kcal (2) G-P(sol) polarization free energy of solvation -77.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds