Wall clock time and date at job start Tue Mar 31 2020 16:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00043 * 2 1 4 4 C 1.53002 * 109.46834 * 269.99920 * 3 2 1 5 5 C 1.52998 * 109.47349 * 299.99901 * 4 3 2 6 6 C 1.52997 * 109.47047 * 60.00178 * 4 3 2 7 7 C 1.47207 * 109.47010 * 179.97438 * 4 3 2 8 8 N 4.80462 * 118.48497 * 340.02518 * 2 1 3 9 9 C 1.34775 * 119.99892 * 179.97438 * 2 1 3 10 10 O 1.21726 * 120.00073 * 179.97438 * 9 2 1 11 11 C 1.46258 * 120.00322 * 0.02562 * 9 2 1 12 12 C 1.35015 * 120.00185 * 179.97438 * 11 9 2 13 13 C 1.46966 * 119.99859 * 179.72327 * 12 11 9 14 14 C 1.40020 * 120.10099 * 359.72646 * 13 12 11 15 15 C 1.37601 * 119.89632 * 179.78802 * 14 13 12 16 16 C 1.39173 * 120.10087 * 0.48795 * 15 14 13 17 17 O 1.35568 * 119.90002 * 179.76457 * 16 15 14 18 18 C 1.34779 * 117.00070 * 174.42258 * 17 16 15 19 19 H 1.07996 * 120.00296 * 5.05680 * 18 17 16 20 20 C 1.38728 * 119.99880 * 185.05920 * 18 17 16 21 21 N 1.31504 * 119.99788 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46864 * 89.99472 * 22 20 18 24 24 H 1.48497 * 109.47062 * 209.99626 * 22 20 18 25 25 H 1.48504 * 109.47113 * 329.99918 * 22 20 18 26 26 C 1.39182 * 120.20443 * 359.74007 * 16 15 14 27 27 C 1.37597 * 120.10073 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47248 * 270.00184 * 1 2 3 29 29 H 1.08995 * 109.47089 * 29.99860 * 1 2 3 30 30 H 1.08997 * 109.47344 * 150.00363 * 1 2 3 31 31 H 1.08996 * 109.47316 * 30.00036 * 3 2 1 32 32 H 1.09001 * 109.47286 * 149.99906 * 3 2 1 33 33 H 1.09000 * 109.46810 * 59.99975 * 5 4 3 34 34 H 1.08997 * 109.47154 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46995 * 300.00152 * 5 4 3 36 36 H 1.09004 * 109.47252 * 60.00096 * 6 4 3 37 37 H 1.09007 * 109.46837 * 179.97438 * 6 4 3 38 38 H 1.08999 * 109.47337 * 299.99519 * 6 4 3 39 39 H 1.08007 * 119.99439 * 359.72456 * 11 9 2 40 40 H 1.07994 * 120.00134 * 359.72623 * 12 11 9 41 41 H 1.08001 * 120.05482 * 359.97438 * 14 13 12 42 42 H 1.08000 * 119.94685 * 180.22931 * 15 14 13 43 43 H 0.97004 * 119.99826 * 180.02562 * 21 20 18 44 44 H 1.07995 * 119.94818 * 179.97438 * 26 16 15 45 45 H 1.07996 * 120.05582 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2794 0.6440 -2.1638 6 6 1.1156 1.8932 -2.1637 7 6 3.1880 2.9854 -1.4426 8 7 3.7565 3.9689 -1.4426 9 6 2.1389 -1.1672 0.0005 10 8 3.3561 -1.1672 0.0001 11 6 1.4076 -2.4339 0.0005 12 6 2.0827 -3.6031 0.0005 13 6 1.3479 -4.8759 0.0067 14 6 -0.0523 -4.8783 0.0183 15 6 -0.7361 -6.0724 0.0196 16 6 -0.0381 -7.2764 0.0196 17 8 -0.7159 -8.4505 0.0258 18 6 0.0127 -9.5783 -0.0913 19 1 1.0914 -9.5257 -0.1021 20 6 -0.6229 -10.8068 -0.1979 21 7 -1.9363 -10.8709 -0.1843 22 14 0.3870 -12.3698 -0.3608 23 1 0.6755 -12.9157 0.9898 24 1 -0.3758 -13.3722 -1.1473 25 1 1.6641 -12.0641 -1.0543 26 6 1.3537 -7.2789 0.0129 27 6 2.0459 -6.0898 0.0067 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1384 0.5138 33 1 2.7343 -0.2999 -2.1637 34 1 3.4614 0.9588 -3.1913 35 1 4.2318 0.5137 -1.6499 36 1 0.5266 2.6530 -1.6499 37 1 1.2973 2.2083 -3.1913 38 1 0.5706 0.9493 -2.1638 39 1 0.3276 -2.4338 0.0046 40 1 3.1626 -3.6031 -0.0039 41 1 -0.5948 -3.9444 0.0232 42 1 -1.8161 -6.0752 0.0249 43 1 -2.3807 -11.7299 -0.2585 44 1 1.8912 -8.2156 0.0134 45 1 3.1259 -6.0926 0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492853983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:52 Heat of formation + Delta-G solvation = 7.955330 kcal Electronic energy + Delta-G solvation = -26272.577906 eV Core-core repulsion = 22449.662582 eV Total energy + Delta-G solvation = -3822.915324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.45603 -39.22203 -38.05355 -36.92258 -35.95961 -34.20056 -33.18128 -32.31275 -30.47032 -28.83727 -28.22831 -27.45384 -26.14952 -25.60085 -23.69012 -22.42413 -21.98022 -20.28317 -18.78422 -18.05962 -17.61446 -17.38487 -17.04983 -16.12218 -15.70604 -15.13394 -14.83568 -14.68927 -14.45925 -14.22193 -13.92062 -13.83257 -13.74647 -13.49512 -13.35105 -13.13333 -13.05009 -12.94965 -12.75957 -12.56646 -12.11840 -12.02081 -11.93952 -11.81698 -11.79452 -11.63528 -11.51656 -11.26680 -11.15323 -11.09919 -10.70956 -10.56649 -9.80038 -9.64133 -9.52918 -8.95246 -8.84417 -8.42122 -7.15555 -6.68515 -4.23194 1.00627 2.09936 2.32772 2.44710 2.51162 2.83330 3.01599 3.02668 3.07557 3.46546 3.62266 3.79509 4.31057 4.35009 4.47410 4.56005 4.72568 4.85629 4.89237 4.99508 5.05681 5.14135 5.21218 5.27647 5.31051 5.41447 5.43641 5.49794 5.54181 5.55491 5.58644 5.63601 5.74079 5.97273 6.01636 6.08241 6.18357 6.42742 6.45274 6.57004 6.75293 6.87791 7.09023 7.18707 7.21053 7.22293 7.30092 7.60168 7.76776 8.19983 8.76286 9.42868 10.47951 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.033932 B = 0.001871 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.976869 B =14957.791913 C =15336.724440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.616 5.616 3 C 0.131 3.869 4 C 0.017 3.983 5 C -0.134 4.134 6 C -0.145 4.145 7 C 0.220 3.780 8 N -0.435 5.435 9 C 0.558 3.442 10 O -0.549 6.549 11 C -0.288 4.288 12 C 0.042 3.958 13 C -0.201 4.201 14 C -0.042 4.042 15 C -0.200 4.200 16 C 0.167 3.833 17 O -0.161 6.161 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.042 3.958 21 N -0.851 5.851 22 Si 0.945 3.055 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.265 1.265 26 C -0.243 4.243 27 C -0.034 4.034 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.274 0.726 44 H 0.131 0.869 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 18.496 -1.579 18.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.349 5.349 3 C 0.006 3.994 4 C 0.012 3.988 5 C -0.192 4.192 6 C -0.203 4.203 7 C -0.099 4.099 8 N -0.109 5.109 9 C 0.352 3.648 10 O -0.429 6.429 11 C -0.309 4.309 12 C 0.022 3.978 13 C -0.202 4.202 14 C -0.060 4.060 15 C -0.219 4.219 16 C 0.110 3.890 17 O -0.062 6.062 18 C -0.469 4.469 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.483 5.483 22 Si 0.769 3.231 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.189 1.189 26 C -0.262 4.262 27 C -0.052 4.052 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.149 0.851 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.680 19.713 -1.566 20.114 hybrid contribution 0.131 -1.105 -0.074 1.115 sum 3.812 18.607 -1.640 19.064 Atomic orbital electron populations 1.22023 0.79177 1.03653 1.02327 1.47559 1.06939 1.05170 1.75248 1.21315 0.99166 0.85869 0.93084 1.18775 0.94874 0.85970 0.99211 1.21886 1.00573 0.97281 0.99490 1.22028 0.94285 1.03455 1.00517 1.29001 0.93441 0.94149 0.93270 1.81219 1.09493 1.11991 1.08223 1.18426 0.87153 0.84051 0.75133 1.90790 1.13751 1.87548 1.50812 1.22507 1.00102 0.91275 1.17045 1.22312 0.99276 0.91011 0.85164 1.18454 0.93066 0.91987 1.16658 1.20859 0.92927 0.96548 0.95673 1.20151 0.99678 0.89976 1.12107 1.19619 0.90740 0.87313 0.91298 1.83899 1.35597 1.11253 1.75478 1.21482 0.91479 0.81841 1.52060 0.88505 1.25401 0.96207 0.98868 0.95978 1.70010 1.07744 1.26811 1.43779 0.85647 0.79065 0.79512 0.78916 1.19620 1.20030 1.18927 1.21104 0.94005 0.98683 1.12381 1.20993 0.98564 0.91413 0.94275 0.92402 0.90737 0.90107 0.89780 0.88876 0.90425 0.92329 0.90913 0.91713 0.91605 0.89838 0.85593 0.85961 0.86466 0.86134 0.91563 0.85140 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 9.05 59.85 0.54 0.91 16 2 N -0.62 -5.02 2.40 -183.29 -0.44 -5.46 16 3 C 0.13 0.97 4.56 -4.04 -0.02 0.96 16 4 C 0.02 0.12 0.77 -157.29 -0.12 0.00 16 5 C -0.13 -1.16 7.09 37.16 0.26 -0.90 16 6 C -0.14 -0.74 7.18 37.16 0.27 -0.48 16 7 C 0.22 2.08 13.86 -20.76 -0.29 1.79 16 8 N -0.43 -5.25 18.54 42.15 0.78 -4.46 16 9 C 0.56 6.46 6.01 -13.04 -0.08 6.38 16 10 O -0.55 -7.96 14.00 5.17 0.07 -7.88 16 11 C -0.29 -3.38 8.60 -37.51 -0.32 -3.70 16 12 C 0.04 0.57 9.45 -37.19 -0.35 0.22 16 13 C -0.20 -3.16 5.87 -105.02 -0.62 -3.78 16 14 C -0.04 -0.66 9.40 -39.15 -0.37 -1.03 16 15 C -0.20 -3.79 9.97 -39.47 -0.39 -4.18 16 16 C 0.17 3.69 6.66 -38.88 -0.26 3.43 16 17 O -0.16 -4.27 9.74 0.75 0.01 -4.26 16 18 C -0.39 -10.20 9.48 30.91 0.29 -9.90 16 19 H 0.10 2.30 5.18 -52.49 -0.27 2.03 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.85 -23.34 13.67 55.48 0.76 -22.58 16 22 Si 0.94 19.11 29.55 -169.99 -5.02 14.08 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 26 C -0.24 -4.82 9.14 -39.47 -0.36 -5.18 16 27 C -0.03 -0.57 9.78 -39.14 -0.38 -0.96 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.24 6.05 -51.93 -0.31 -0.07 16 30 H 0.08 0.41 6.10 -51.93 -0.32 0.10 16 31 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.09 0.86 7.42 -51.93 -0.39 0.47 16 33 H 0.08 0.75 6.15 -51.93 -0.32 0.43 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.75 7.72 -51.93 -0.40 0.35 16 36 H 0.06 0.26 8.08 -51.93 -0.42 -0.16 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.39 5.99 -51.93 -0.31 0.08 16 39 H 0.13 1.24 4.22 -52.48 -0.22 1.02 16 40 H 0.12 1.66 7.52 -52.49 -0.39 1.27 16 41 H 0.12 1.45 6.16 -52.49 -0.32 1.12 16 42 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 44 H 0.13 2.58 5.62 -52.49 -0.29 2.29 16 45 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -30.77 374.71 -6.13 -36.90 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.64 Total: 3.45 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -2.29 Total: -15.42 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 1.10 Total: -32.51 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.77 -6.13 -36.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492853983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.852 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds