Wall clock time and date at job start Tue Mar 31 2020 16:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00043 * 2 1 4 4 C 1.53002 * 109.46834 * 269.99920 * 3 2 1 5 5 C 1.52998 * 109.47349 * 299.99901 * 4 3 2 6 6 C 1.52997 * 109.47047 * 60.00178 * 4 3 2 7 7 C 1.47207 * 109.47010 * 179.97438 * 4 3 2 8 8 N 4.80462 * 118.48497 * 340.02518 * 2 1 3 9 9 C 1.34775 * 119.99892 * 179.97438 * 2 1 3 10 10 O 1.21726 * 120.00073 * 179.97438 * 9 2 1 11 11 C 1.46258 * 120.00322 * 0.02562 * 9 2 1 12 12 C 1.35015 * 120.00185 * 179.97438 * 11 9 2 13 13 C 1.46966 * 119.99859 * 179.72327 * 12 11 9 14 14 C 1.40020 * 120.10099 * 359.72646 * 13 12 11 15 15 C 1.37601 * 119.89632 * 179.78802 * 14 13 12 16 16 C 1.39173 * 120.10087 * 0.48795 * 15 14 13 17 17 O 1.35568 * 119.90002 * 179.76457 * 16 15 14 18 18 C 1.34779 * 117.00070 * 174.42258 * 17 16 15 19 19 H 1.07996 * 120.00296 * 5.05680 * 18 17 16 20 20 C 1.38728 * 119.99880 * 185.05920 * 18 17 16 21 21 N 1.31504 * 119.99788 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46864 * 89.99472 * 22 20 18 24 24 H 1.48497 * 109.47062 * 209.99626 * 22 20 18 25 25 H 1.48504 * 109.47113 * 329.99918 * 22 20 18 26 26 C 1.39182 * 120.20443 * 359.74007 * 16 15 14 27 27 C 1.37597 * 120.10073 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47248 * 270.00184 * 1 2 3 29 29 H 1.08995 * 109.47089 * 29.99860 * 1 2 3 30 30 H 1.08997 * 109.47344 * 150.00363 * 1 2 3 31 31 H 1.08996 * 109.47316 * 30.00036 * 3 2 1 32 32 H 1.09001 * 109.47286 * 149.99906 * 3 2 1 33 33 H 1.09000 * 109.46810 * 59.99975 * 5 4 3 34 34 H 1.08997 * 109.47154 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46995 * 300.00152 * 5 4 3 36 36 H 1.09004 * 109.47252 * 60.00096 * 6 4 3 37 37 H 1.09007 * 109.46837 * 179.97438 * 6 4 3 38 38 H 1.08999 * 109.47337 * 299.99519 * 6 4 3 39 39 H 1.08007 * 119.99439 * 359.72456 * 11 9 2 40 40 H 1.07994 * 120.00134 * 359.72623 * 12 11 9 41 41 H 1.08001 * 120.05482 * 359.97438 * 14 13 12 42 42 H 1.08000 * 119.94685 * 180.22931 * 15 14 13 43 43 H 0.97004 * 119.99826 * 180.02562 * 21 20 18 44 44 H 1.07995 * 119.94818 * 179.97438 * 26 16 15 45 45 H 1.07996 * 120.05582 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2794 0.6440 -2.1638 6 6 1.1156 1.8932 -2.1637 7 6 3.1880 2.9854 -1.4426 8 7 3.7565 3.9689 -1.4426 9 6 2.1389 -1.1672 0.0005 10 8 3.3561 -1.1672 0.0001 11 6 1.4076 -2.4339 0.0005 12 6 2.0827 -3.6031 0.0005 13 6 1.3479 -4.8759 0.0067 14 6 -0.0523 -4.8783 0.0183 15 6 -0.7361 -6.0724 0.0196 16 6 -0.0381 -7.2764 0.0196 17 8 -0.7159 -8.4505 0.0258 18 6 0.0127 -9.5783 -0.0913 19 1 1.0914 -9.5257 -0.1021 20 6 -0.6229 -10.8068 -0.1979 21 7 -1.9363 -10.8709 -0.1843 22 14 0.3870 -12.3698 -0.3608 23 1 0.6755 -12.9157 0.9898 24 1 -0.3758 -13.3722 -1.1473 25 1 1.6641 -12.0641 -1.0543 26 6 1.3537 -7.2789 0.0129 27 6 2.0459 -6.0898 0.0067 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1384 0.5138 33 1 2.7343 -0.2999 -2.1637 34 1 3.4614 0.9588 -3.1913 35 1 4.2318 0.5137 -1.6499 36 1 0.5266 2.6530 -1.6499 37 1 1.2973 2.2083 -3.1913 38 1 0.5706 0.9493 -2.1638 39 1 0.3276 -2.4338 0.0046 40 1 3.1626 -3.6031 -0.0039 41 1 -0.5948 -3.9444 0.0232 42 1 -1.8161 -6.0752 0.0249 43 1 -2.3807 -11.7299 -0.2585 44 1 1.8912 -8.2156 0.0134 45 1 3.1259 -6.0926 0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492853983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:51 Heat of formation + Delta-G solvation = -9.305052 kcal Electronic energy + Delta-G solvation = -26273.326373 eV Core-core repulsion = 22449.662582 eV Total energy + Delta-G solvation = -3823.663790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.28111 -40.75791 -38.93310 -38.37133 -36.79291 -35.00435 -34.57399 -33.86388 -31.91908 -29.93311 -28.87330 -28.22937 -27.47922 -26.67685 -24.67917 -23.72258 -23.15062 -21.47837 -20.10976 -19.31221 -18.76729 -18.27085 -18.22916 -16.99117 -16.46468 -16.40827 -16.28291 -15.94429 -15.57920 -15.51669 -15.15175 -14.97383 -14.65991 -14.53394 -14.24357 -14.06907 -14.02596 -13.77957 -13.71669 -13.57203 -13.37206 -13.27057 -12.89560 -12.73397 -12.68613 -12.53806 -12.50912 -12.34582 -12.18738 -12.12400 -12.05604 -11.85319 -11.17561 -11.06312 -10.75720 -10.51384 -9.84307 -9.59644 -8.62187 -8.49926 -6.15740 -0.17769 0.63273 1.18739 1.37245 1.47115 1.53956 1.60147 1.69294 2.11023 2.16915 2.44164 2.88698 2.91955 3.22352 3.46844 3.66495 3.75080 3.85427 3.98700 4.00130 4.12964 4.30248 4.35916 4.49531 4.50890 4.56115 4.66064 4.71478 4.74963 4.84191 4.88256 4.95020 4.98177 5.00029 5.07101 5.11294 5.24384 5.27540 5.31697 5.37039 5.40817 5.57802 5.67017 5.69780 5.87652 6.00305 6.15756 6.46673 6.47826 6.94749 7.30495 7.72627 8.71993 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.033932 B = 0.001871 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.976869 B =14957.791913 C =15336.724440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.603 5.603 3 C 0.129 3.871 4 C 0.024 3.976 5 C -0.131 4.131 6 C -0.143 4.143 7 C 0.243 3.757 8 N -0.482 5.482 9 C 0.550 3.450 10 O -0.580 6.580 11 C -0.244 4.244 12 C 0.013 3.987 13 C -0.168 4.168 14 C -0.036 4.036 15 C -0.206 4.206 16 C 0.128 3.872 17 O -0.221 6.221 18 C -0.416 4.416 19 H 0.105 0.895 20 C -0.018 4.018 21 N -0.913 5.913 22 Si 1.017 2.983 23 H -0.264 1.264 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.250 4.250 27 C -0.043 4.043 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.155 0.845 40 H 0.123 0.877 41 H 0.164 0.836 42 H 0.123 0.877 43 H 0.274 0.726 44 H 0.122 0.878 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 22.029 -1.760 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.335 5.335 3 C 0.004 3.996 4 C 0.019 3.981 5 C -0.190 4.190 6 C -0.201 4.201 7 C -0.075 4.075 8 N -0.157 5.157 9 C 0.344 3.656 10 O -0.462 6.462 11 C -0.264 4.264 12 C -0.007 4.007 13 C -0.169 4.169 14 C -0.053 4.053 15 C -0.225 4.225 16 C 0.076 3.924 17 O -0.126 6.126 18 C -0.492 4.492 19 H 0.122 0.878 20 C -0.217 4.217 21 N -0.550 5.550 22 Si 0.836 3.164 23 H -0.189 1.189 24 H -0.196 1.196 25 H -0.177 1.177 26 C -0.270 4.270 27 C -0.061 4.061 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.172 0.828 40 H 0.141 0.859 41 H 0.181 0.819 42 H 0.141 0.859 43 H 0.084 0.916 44 H 0.139 0.861 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.945 23.339 -1.744 23.734 hybrid contribution 0.234 -1.463 -0.006 1.481 sum 4.179 21.876 -1.749 22.340 Atomic orbital electron populations 1.22363 0.76721 1.05488 1.03706 1.47573 1.08360 1.04308 1.73220 1.21402 0.98902 0.86147 0.93154 1.18843 0.95635 0.84285 0.99332 1.21826 0.99679 0.97487 0.99959 1.22077 0.92814 1.04688 1.00544 1.29342 0.92377 0.93944 0.91799 1.81250 1.10965 1.13702 1.09827 1.18487 0.86779 0.85011 0.75367 1.90805 1.15276 1.88090 1.52065 1.22888 1.01444 0.90747 1.11360 1.22165 0.99401 0.90459 0.88656 1.18799 0.93309 0.92605 1.12155 1.21292 0.93033 0.97034 0.93976 1.20444 1.00187 0.90100 1.11815 1.20214 0.92036 0.87421 0.92743 1.83880 1.36700 1.12282 1.79723 1.21870 0.92016 0.82574 1.52692 0.87820 1.26572 0.97361 1.02116 0.95645 1.70143 1.09680 1.27459 1.47737 0.84609 0.77655 0.74982 0.79160 1.18850 1.19597 1.17675 1.21194 0.93423 0.99706 1.12644 1.21312 1.00101 0.90736 0.93930 0.91241 0.88040 0.89357 0.86820 0.90940 0.90977 0.91492 0.93115 0.89873 0.91416 0.88720 0.82812 0.85930 0.81901 0.85873 0.91648 0.86067 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 9.05 127.77 1.16 1.41 16 2 N -0.60 -7.01 2.40 -852.01 -2.04 -9.05 16 3 C 0.13 1.44 4.56 86.38 0.39 1.83 16 4 C 0.02 0.27 0.77 -53.99 -0.04 0.23 16 5 C -0.13 -1.98 7.09 71.98 0.51 -1.46 16 6 C -0.14 -0.81 7.18 71.98 0.52 -0.30 16 7 C 0.24 4.07 13.86 89.44 1.24 5.31 16 8 N -0.48 -11.00 18.54 20.01 0.37 -10.63 16 9 C 0.55 10.53 6.01 86.33 0.52 11.04 16 10 O -0.58 -15.37 14.00 -4.43 -0.06 -15.43 16 11 C -0.24 -4.48 8.60 23.61 0.20 -4.27 16 12 C 0.01 0.30 9.45 23.82 0.23 0.53 16 13 C -0.17 -4.76 5.87 -20.12 -0.12 -4.88 16 14 C -0.04 -1.01 9.40 22.55 0.21 -0.79 16 15 C -0.21 -7.74 9.97 22.34 0.22 -7.52 16 16 C 0.13 5.89 6.66 22.72 0.15 6.04 16 17 O -0.22 -12.52 9.74 -20.22 -0.20 -12.72 16 18 C -0.42 -23.04 9.48 67.94 0.64 -22.40 16 19 H 0.10 5.26 5.18 -2.91 -0.02 5.25 16 20 C -0.02 -0.99 5.49 84.86 0.47 -0.52 16 21 N -0.91 -53.64 13.67 21.62 0.30 -53.35 16 22 Si 1.02 40.98 29.55 68.60 2.03 43.01 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 25 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 26 C -0.25 -10.18 9.14 22.34 0.20 -9.98 16 27 C -0.04 -1.38 9.78 22.55 0.22 -1.16 16 28 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.10 -0.02 6.05 -2.39 -0.01 -0.04 16 30 H 0.09 0.30 6.10 -2.39 -0.01 0.29 16 31 H 0.11 0.66 8.07 -2.39 -0.02 0.64 16 32 H 0.07 1.17 7.42 -2.39 -0.02 1.15 16 33 H 0.07 1.18 6.15 -2.39 -0.01 1.16 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 0.99 7.72 -2.39 -0.02 0.97 16 36 H 0.08 0.22 8.08 -2.38 -0.02 0.20 16 37 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.09 0.36 5.99 -2.39 -0.01 0.35 16 39 H 0.15 1.96 4.22 -2.91 -0.01 1.95 16 40 H 0.12 2.96 7.52 -2.91 -0.02 2.94 16 41 H 0.16 3.04 6.16 -2.91 -0.02 3.02 16 42 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 43 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.12 5.04 5.62 -2.91 -0.02 5.03 16 45 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -74.76 374.71 8.15 -66.61 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 1.03 Total: 18.44 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 6.73 Total: -26.89 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -1.38 Total: -73.03 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.26 Total: -28.15 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -74.76 8.15 -66.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492853983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.309 kcal (2) G-P(sol) polarization free energy of solvation -74.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds