Wall clock time and date at job start Tue Mar 31 2020 16:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46493 * 120.00047 * 2 1 4 4 C 1.52996 * 109.47552 * 269.99930 * 3 2 1 5 5 C 1.53001 * 109.47000 * 300.00126 * 4 3 2 6 6 C 1.53005 * 109.47097 * 60.00047 * 4 3 2 7 7 C 1.47197 * 109.47534 * 179.97438 * 4 3 2 8 8 N 4.80458 * 118.48566 * 340.02941 * 2 1 3 9 9 C 1.34783 * 119.99608 * 180.02562 * 2 1 3 10 10 O 1.21719 * 119.99219 * 180.02562 * 9 2 1 11 11 C 1.46246 * 120.00074 * 359.97438 * 9 2 1 12 12 C 1.35028 * 119.99836 * 173.35996 * 11 9 2 13 13 C 1.46968 * 119.99903 * 348.73973 * 12 11 9 14 14 C 1.40022 * 120.10112 * 315.98502 * 13 12 11 15 15 C 1.37597 * 119.89619 * 179.78516 * 14 13 12 16 16 C 1.39174 * 120.10135 * 0.49196 * 15 14 13 17 17 O 1.35572 * 119.89710 * 179.76506 * 16 15 14 18 18 C 1.34786 * 116.99738 * 174.29412 * 17 16 15 19 19 H 1.08002 * 119.99871 * 5.06347 * 18 17 16 20 20 C 1.38717 * 119.99828 * 185.05915 * 18 17 16 21 21 N 1.31504 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99976 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46866 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46806 * 120.00007 * 22 20 18 25 25 H 1.48496 * 109.46931 * 239.99910 * 22 20 18 26 26 C 1.39173 * 120.20337 * 359.73402 * 16 15 14 27 27 C 1.37600 * 120.10170 * 0.03084 * 26 16 15 28 28 H 1.08996 * 109.47222 * 269.99397 * 1 2 3 29 29 H 1.08997 * 109.47198 * 29.99737 * 1 2 3 30 30 H 1.09009 * 109.47337 * 149.99632 * 1 2 3 31 31 H 1.09007 * 109.47131 * 30.00493 * 3 2 1 32 32 H 1.09005 * 109.47250 * 149.99701 * 3 2 1 33 33 H 1.09001 * 109.46990 * 60.00115 * 5 4 3 34 34 H 1.09003 * 109.46775 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.47021 * 299.99909 * 5 4 3 36 36 H 1.09001 * 109.47143 * 60.00027 * 6 4 3 37 37 H 1.08990 * 109.47347 * 180.02562 * 6 4 3 38 38 H 1.09004 * 109.46749 * 300.00606 * 6 4 3 39 39 H 1.07995 * 120.00318 * 353.08387 * 11 9 2 40 40 H 1.07997 * 119.99974 * 168.74700 * 12 11 9 41 41 H 1.08006 * 120.05082 * 359.97438 * 14 13 12 42 42 H 1.08000 * 119.94747 * 180.22804 * 15 14 13 43 43 H 0.97002 * 119.99919 * 180.02562 * 21 20 18 44 44 H 1.08000 * 119.95024 * 179.97438 * 26 16 15 45 45 H 1.07998 * 120.05126 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4424 5 6 3.2794 0.6441 -2.1637 6 6 1.1157 1.8934 -2.1637 7 6 3.1880 2.9855 -1.4424 8 7 3.7565 3.9690 -1.4423 9 6 2.1389 -1.1673 -0.0005 10 8 3.3560 -1.1672 -0.0001 11 6 1.4076 -2.4338 -0.0005 12 6 2.0758 -3.5992 -0.1363 13 6 3.4919 -3.5928 -0.5294 14 6 3.9305 -2.7538 -1.5611 15 6 5.2581 -2.7480 -1.9228 16 6 6.1625 -3.5817 -1.2718 17 8 7.4688 -3.5760 -1.6348 18 6 8.3140 -4.3161 -0.8900 19 1 7.9294 -4.9424 -0.0987 20 6 9.6777 -4.2733 -1.1400 21 7 10.1459 -3.5111 -2.1039 22 14 10.8492 -5.2984 -0.1073 23 1 10.0771 -6.0639 0.9040 24 1 11.5863 -6.2424 -0.9853 25 1 11.8154 -4.4041 0.5796 26 6 5.7303 -4.4207 -0.2490 27 6 4.4055 -4.4298 0.1227 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6084 2.0283 0.5139 32 1 3.1499 1.1384 0.5139 33 1 2.7344 -0.2998 -2.1638 34 1 3.4608 0.9587 -3.1915 35 1 4.2318 0.5138 -1.6498 36 1 0.5266 2.6531 -1.6499 37 1 1.2973 2.2077 -3.1914 38 1 0.5707 0.9494 -2.1637 39 1 0.3335 -2.4372 0.1125 40 1 1.5697 -4.5361 0.0440 41 1 3.2284 -2.1101 -2.0702 42 1 5.5979 -2.0985 -2.7160 43 1 11.0995 -3.4814 -2.2790 44 1 6.4357 -5.0663 0.2531 45 1 4.0710 -5.0815 0.9163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492853987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:56 Heat of formation + Delta-G solvation = 27.153056 kcal Electronic energy + Delta-G solvation = -27887.839064 eV Core-core repulsion = 24065.756216 eV Total energy + Delta-G solvation = -3822.082848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.45021 -38.91773 -37.93343 -36.56833 -35.63533 -34.05556 -33.01274 -32.11456 -30.16362 -28.59333 -28.07080 -27.34984 -26.01183 -25.35327 -23.50877 -22.21432 -21.69058 -20.44873 -18.49689 -17.92852 -17.43223 -17.31456 -16.81121 -15.93385 -15.54577 -14.94953 -14.60650 -14.48156 -14.22997 -14.00636 -13.90527 -13.56377 -13.50989 -13.27562 -13.17953 -13.00306 -12.89156 -12.74952 -12.54630 -12.51522 -12.17281 -11.93974 -11.79110 -11.72736 -11.59378 -11.36970 -11.30567 -11.06189 -11.00971 -10.67403 -10.58215 -10.39915 -9.49609 -9.43037 -9.17303 -8.75536 -8.69880 -7.93931 -6.88107 -6.46517 -4.02187 1.19655 2.39353 2.54971 2.66097 2.67914 2.98711 3.13214 3.14752 3.19825 3.52963 3.80670 3.96640 4.47904 4.52813 4.67912 4.72798 4.82398 4.91683 5.08321 5.11201 5.21490 5.24195 5.32415 5.38550 5.42108 5.48958 5.56022 5.62620 5.67899 5.71601 5.73118 5.84998 5.94363 6.20311 6.26335 6.30688 6.39383 6.48447 6.57755 6.77565 7.01812 7.11738 7.32683 7.39965 7.42557 7.46433 7.49761 7.90732 8.00158 8.42489 8.99338 9.70926 10.71281 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014215 B = 0.003245 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.318754 B = 8626.850307 C =10030.355253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.619 5.619 3 C 0.131 3.869 4 C 0.018 3.982 5 C -0.138 4.138 6 C -0.143 4.143 7 C 0.219 3.781 8 N -0.433 5.433 9 C 0.541 3.459 10 O -0.501 6.501 11 C -0.271 4.271 12 C 0.030 3.970 13 C -0.191 4.191 14 C 0.010 3.990 15 C -0.202 4.202 16 C 0.171 3.829 17 O -0.173 6.173 18 C -0.390 4.390 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.859 5.859 22 Si 0.941 3.059 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.250 4.250 27 C -0.041 4.041 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.270 0.730 44 H 0.125 0.875 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.012 4.254 3.031 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.354 5.354 3 C 0.006 3.994 4 C 0.013 3.987 5 C -0.196 4.196 6 C -0.201 4.201 7 C -0.100 4.100 8 N -0.108 5.108 9 C 0.333 3.667 10 O -0.376 6.376 11 C -0.292 4.292 12 C 0.011 3.989 13 C -0.192 4.192 14 C -0.008 4.008 15 C -0.221 4.221 16 C 0.116 3.884 17 O -0.075 6.075 18 C -0.466 4.466 19 H 0.112 0.888 20 C -0.166 4.166 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.269 4.269 27 C -0.059 4.059 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.105 5.919 2.754 22.091 hybrid contribution 0.204 -0.759 0.632 1.008 sum -20.901 5.160 3.386 21.793 Atomic orbital electron populations 1.21943 0.79858 1.03307 1.01821 1.47711 1.06554 1.05371 1.75767 1.21294 0.99245 0.85691 0.93152 1.18754 0.94709 0.86103 0.99138 1.22001 1.00962 0.96897 0.99751 1.22007 0.94413 1.03118 1.00544 1.28978 0.93497 0.94141 0.93347 1.81214 1.09208 1.12247 1.08132 1.18522 0.87728 0.83902 0.76551 1.91015 1.12877 1.86381 1.47301 1.22658 0.99423 0.92305 1.14802 1.22373 0.93305 0.96553 0.86674 1.18291 0.92359 1.05069 1.03463 1.20483 0.93951 0.92595 0.93818 1.19994 0.92443 1.04177 1.05490 1.19535 0.85511 0.91952 0.91381 1.83907 1.12637 1.61203 1.49733 1.21442 0.86949 1.23114 1.15058 0.88825 1.25325 0.96561 0.97488 0.97188 1.70029 1.14420 1.36291 1.28570 0.85640 0.79714 0.78960 0.79092 1.19018 1.20114 1.20104 1.20953 0.96315 1.06043 1.03632 1.20735 0.92716 0.95637 0.96824 0.92851 0.90889 0.90552 0.90075 0.88699 0.90515 0.92270 0.90276 0.91903 0.91649 0.90084 0.85916 0.86151 0.87861 0.86895 0.91992 0.85731 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 9.01 59.85 0.54 0.91 16 2 N -0.62 -5.53 2.40 -183.29 -0.44 -5.97 16 3 C 0.13 1.21 4.56 -4.05 -0.02 1.19 16 4 C 0.02 0.17 0.77 -157.30 -0.12 0.05 16 5 C -0.14 -1.60 7.09 37.16 0.26 -1.33 16 6 C -0.14 -0.91 7.18 37.16 0.27 -0.64 16 7 C 0.22 2.63 13.86 -20.76 -0.29 2.34 16 8 N -0.43 -6.38 18.54 42.15 0.78 -5.60 16 9 C 0.54 6.73 5.17 -13.04 -0.07 6.66 16 10 O -0.50 -8.40 10.01 5.17 0.05 -8.35 16 11 C -0.27 -2.92 9.03 -37.51 -0.34 -3.26 16 12 C 0.03 0.38 9.80 -37.19 -0.36 0.02 16 13 C -0.19 -3.25 4.52 -105.02 -0.47 -3.73 16 14 C 0.01 0.18 6.60 -39.15 -0.26 -0.08 16 15 C -0.20 -4.37 9.97 -39.47 -0.39 -4.76 16 16 C 0.17 4.22 6.66 -38.89 -0.26 3.96 16 17 O -0.17 -4.99 9.74 0.72 0.01 -4.99 16 18 C -0.39 -10.99 9.48 30.91 0.29 -10.70 16 19 H 0.09 2.45 5.18 -52.49 -0.27 2.18 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 22 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 C -0.25 -5.53 9.14 -39.47 -0.36 -5.89 16 27 C -0.04 -0.75 9.78 -39.15 -0.38 -1.14 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.24 6.05 -51.93 -0.31 -0.07 16 30 H 0.08 0.32 6.19 -51.92 -0.32 0.00 16 31 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 32 H 0.09 1.12 7.42 -51.93 -0.39 0.74 16 33 H 0.08 0.89 4.32 -51.93 -0.22 0.67 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.16 7.72 -51.93 -0.40 0.75 16 36 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.44 5.99 -51.93 -0.31 0.13 16 39 H 0.12 0.90 6.34 -52.49 -0.33 0.56 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.10 1.63 5.24 -52.48 -0.28 1.36 16 42 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.13 2.76 5.62 -52.49 -0.29 2.47 16 45 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -34.22 366.48 -6.04 -40.27 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.64 Total: 3.48 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.06 Total: -15.42 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 1.10 Total: -36.18 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.06 Total: -13.33 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.22 -6.04 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492853987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.422 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds