Wall clock time and date at job start Tue Mar 31 2020 16:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46493 * 120.00047 * 2 1 4 4 C 1.52996 * 109.47552 * 269.99930 * 3 2 1 5 5 C 1.53001 * 109.47000 * 300.00126 * 4 3 2 6 6 C 1.53005 * 109.47097 * 60.00047 * 4 3 2 7 7 C 1.47197 * 109.47534 * 179.97438 * 4 3 2 8 8 N 4.80458 * 118.48566 * 340.02941 * 2 1 3 9 9 C 1.34783 * 119.99608 * 180.02562 * 2 1 3 10 10 O 1.21719 * 119.99219 * 180.02562 * 9 2 1 11 11 C 1.46246 * 120.00074 * 359.97438 * 9 2 1 12 12 C 1.35028 * 119.99836 * 173.35996 * 11 9 2 13 13 C 1.46968 * 119.99903 * 348.73973 * 12 11 9 14 14 C 1.40022 * 120.10112 * 315.98502 * 13 12 11 15 15 C 1.37597 * 119.89619 * 179.78516 * 14 13 12 16 16 C 1.39174 * 120.10135 * 0.49196 * 15 14 13 17 17 O 1.35572 * 119.89710 * 179.76506 * 16 15 14 18 18 C 1.34786 * 116.99738 * 174.29412 * 17 16 15 19 19 H 1.08002 * 119.99871 * 5.06347 * 18 17 16 20 20 C 1.38717 * 119.99828 * 185.05915 * 18 17 16 21 21 N 1.31504 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99976 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46866 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46806 * 120.00007 * 22 20 18 25 25 H 1.48496 * 109.46931 * 239.99910 * 22 20 18 26 26 C 1.39173 * 120.20337 * 359.73402 * 16 15 14 27 27 C 1.37600 * 120.10170 * 0.03084 * 26 16 15 28 28 H 1.08996 * 109.47222 * 269.99397 * 1 2 3 29 29 H 1.08997 * 109.47198 * 29.99737 * 1 2 3 30 30 H 1.09009 * 109.47337 * 149.99632 * 1 2 3 31 31 H 1.09007 * 109.47131 * 30.00493 * 3 2 1 32 32 H 1.09005 * 109.47250 * 149.99701 * 3 2 1 33 33 H 1.09001 * 109.46990 * 60.00115 * 5 4 3 34 34 H 1.09003 * 109.46775 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.47021 * 299.99909 * 5 4 3 36 36 H 1.09001 * 109.47143 * 60.00027 * 6 4 3 37 37 H 1.08990 * 109.47347 * 180.02562 * 6 4 3 38 38 H 1.09004 * 109.46749 * 300.00606 * 6 4 3 39 39 H 1.07995 * 120.00318 * 353.08387 * 11 9 2 40 40 H 1.07997 * 119.99974 * 168.74700 * 12 11 9 41 41 H 1.08006 * 120.05082 * 359.97438 * 14 13 12 42 42 H 1.08000 * 119.94747 * 180.22804 * 15 14 13 43 43 H 0.97002 * 119.99919 * 180.02562 * 21 20 18 44 44 H 1.08000 * 119.95024 * 179.97438 * 26 16 15 45 45 H 1.07998 * 120.05126 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4424 5 6 3.2794 0.6441 -2.1637 6 6 1.1157 1.8934 -2.1637 7 6 3.1880 2.9855 -1.4424 8 7 3.7565 3.9690 -1.4423 9 6 2.1389 -1.1673 -0.0005 10 8 3.3560 -1.1672 -0.0001 11 6 1.4076 -2.4338 -0.0005 12 6 2.0758 -3.5992 -0.1363 13 6 3.4919 -3.5928 -0.5294 14 6 3.9305 -2.7538 -1.5611 15 6 5.2581 -2.7480 -1.9228 16 6 6.1625 -3.5817 -1.2718 17 8 7.4688 -3.5760 -1.6348 18 6 8.3140 -4.3161 -0.8900 19 1 7.9294 -4.9424 -0.0987 20 6 9.6777 -4.2733 -1.1400 21 7 10.1459 -3.5111 -2.1039 22 14 10.8492 -5.2984 -0.1073 23 1 10.0771 -6.0639 0.9040 24 1 11.5863 -6.2424 -0.9853 25 1 11.8154 -4.4041 0.5796 26 6 5.7303 -4.4207 -0.2490 27 6 4.4055 -4.4298 0.1227 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6084 2.0283 0.5139 32 1 3.1499 1.1384 0.5139 33 1 2.7344 -0.2998 -2.1638 34 1 3.4608 0.9587 -3.1915 35 1 4.2318 0.5138 -1.6498 36 1 0.5266 2.6531 -1.6499 37 1 1.2973 2.2077 -3.1914 38 1 0.5707 0.9494 -2.1637 39 1 0.3335 -2.4372 0.1125 40 1 1.5697 -4.5361 0.0440 41 1 3.2284 -2.1101 -2.0702 42 1 5.5979 -2.0985 -2.7160 43 1 11.0995 -3.4814 -2.2790 44 1 6.4357 -5.0663 0.2531 45 1 4.0710 -5.0815 0.9163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492853987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:55 Heat of formation + Delta-G solvation = 5.239415 kcal Electronic energy + Delta-G solvation = -27888.789311 eV Core-core repulsion = 24065.756216 eV Total energy + Delta-G solvation = -3823.033095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.42953 -40.55812 -39.04514 -38.05469 -36.71286 -34.94422 -34.51623 -33.77521 -31.78215 -29.78629 -28.84835 -28.32579 -27.38073 -26.62837 -24.53149 -23.63500 -23.13632 -21.69722 -19.90915 -19.38798 -18.68809 -18.26018 -18.14808 -16.94275 -16.49922 -16.33730 -16.23181 -15.77260 -15.50756 -15.39375 -15.23761 -14.76661 -14.56062 -14.47354 -14.25921 -14.19142 -13.90209 -13.79766 -13.67043 -13.59361 -13.52176 -13.14888 -12.98150 -12.80468 -12.62888 -12.55804 -12.31519 -12.22096 -12.18839 -12.10269 -12.02050 -11.84719 -11.18701 -10.92029 -10.50707 -10.29599 -9.68235 -9.36464 -8.50498 -8.46556 -6.14636 0.07417 0.77661 1.17467 1.32728 1.44431 1.51902 1.59021 1.67065 2.16892 2.18366 2.55425 2.89212 2.92938 3.25673 3.57381 3.71898 3.75532 3.97549 4.01571 4.09643 4.18693 4.20396 4.50584 4.51711 4.58259 4.64496 4.70508 4.72563 4.80051 4.87712 4.88950 4.95854 4.99614 5.10149 5.12429 5.14320 5.27406 5.32757 5.36001 5.38280 5.50200 5.67862 5.74902 5.78521 5.90939 6.04904 6.31466 6.44996 6.61155 6.96670 7.48851 7.80486 8.75583 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014215 B = 0.003245 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.318754 B = 8626.850307 C =10030.355253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.606 5.606 3 C 0.131 3.869 4 C 0.025 3.975 5 C -0.133 4.133 6 C -0.138 4.138 7 C 0.240 3.760 8 N -0.485 5.485 9 C 0.525 3.475 10 O -0.556 6.556 11 C -0.228 4.228 12 C 0.002 3.998 13 C -0.157 4.157 14 C 0.018 3.982 15 C -0.218 4.218 16 C 0.124 3.876 17 O -0.234 6.234 18 C -0.412 4.412 19 H 0.102 0.898 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.250 1.250 24 H -0.265 1.265 25 H -0.270 1.270 26 C -0.260 4.260 27 C -0.050 4.050 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.176 0.824 40 H 0.165 0.835 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.272 0.728 44 H 0.114 0.886 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.126 3.667 4.891 29.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.339 5.339 3 C 0.006 3.994 4 C 0.020 3.980 5 C -0.192 4.192 6 C -0.196 4.196 7 C -0.078 4.078 8 N -0.160 5.160 9 C 0.318 3.682 10 O -0.435 6.435 11 C -0.248 4.248 12 C -0.017 4.017 13 C -0.158 4.158 14 C 0.000 4.000 15 C -0.237 4.237 16 C 0.073 3.927 17 O -0.141 6.141 18 C -0.488 4.488 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.173 1.173 24 H -0.190 1.190 25 H -0.195 1.195 26 C -0.280 4.280 27 C -0.068 4.068 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.194 0.806 40 H 0.183 0.817 41 H 0.147 0.853 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.132 0.868 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -27.349 5.351 4.630 28.249 hybrid contribution 1.487 -0.358 0.139 1.536 sum -25.862 4.992 4.769 26.767 Atomic orbital electron populations 1.22345 0.76487 1.05567 1.03597 1.47735 1.08437 1.04073 1.73622 1.21283 0.98595 0.86784 0.92753 1.18884 0.95717 0.83788 0.99589 1.21905 0.99503 0.97996 0.99760 1.22055 0.92303 1.04945 1.00311 1.29511 0.92436 0.94099 0.91777 1.81231 1.10700 1.14212 1.09883 1.19100 0.87343 0.85611 0.76174 1.91037 1.15420 1.87286 1.49763 1.23158 1.01608 0.90319 1.09740 1.22570 0.90375 0.99391 0.89372 1.18900 0.95093 1.01283 1.00476 1.20754 0.92576 0.92681 0.94015 1.20178 0.94029 1.04040 1.05472 1.20058 0.84827 0.94175 0.93607 1.83874 1.14477 1.63770 1.51930 1.21899 0.87762 1.23571 1.15613 0.88116 1.26642 0.98111 0.98905 0.98570 1.70182 1.14816 1.39517 1.31507 0.84517 0.76914 0.77214 0.77459 1.17335 1.19014 1.19513 1.21060 0.98117 1.05647 1.03138 1.21159 0.91201 0.96712 0.97762 0.91305 0.88505 0.88608 0.86811 0.92170 0.90117 0.91916 0.94397 0.89625 0.91642 0.88130 0.80634 0.81724 0.85302 0.88297 0.91881 0.86776 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.18 9.01 127.77 1.15 1.33 16 2 N -0.61 -8.00 2.40 -852.00 -2.04 -10.05 16 3 C 0.13 2.07 4.56 86.38 0.39 2.47 16 4 C 0.03 0.42 0.77 -53.99 -0.04 0.38 16 5 C -0.13 -3.06 7.09 71.98 0.51 -2.55 16 6 C -0.14 -1.17 7.18 71.98 0.52 -0.65 16 7 C 0.24 5.65 13.86 89.44 1.24 6.89 16 8 N -0.48 -14.48 18.54 20.00 0.37 -14.11 16 9 C 0.53 11.00 5.17 86.32 0.45 11.44 16 10 O -0.56 -18.04 10.01 -4.41 -0.04 -18.09 16 11 C -0.23 -3.40 9.03 23.61 0.21 -3.19 16 12 C 0.00 0.04 9.80 23.82 0.23 0.27 16 13 C -0.16 -4.96 4.52 -20.13 -0.09 -5.05 16 14 C 0.02 0.64 6.60 22.55 0.15 0.79 16 15 C -0.22 -10.14 9.97 22.34 0.22 -9.92 16 16 C 0.12 6.63 6.66 22.72 0.15 6.78 16 17 O -0.23 -14.96 9.74 -20.33 -0.20 -15.16 16 18 C -0.41 -25.26 9.48 67.93 0.64 -24.61 16 19 H 0.10 5.69 5.18 -2.91 -0.02 5.68 16 20 C -0.03 -1.49 5.49 84.86 0.47 -1.03 16 21 N -0.92 -58.99 13.67 21.62 0.30 -58.69 16 22 Si 1.02 44.72 29.55 68.60 2.03 46.75 16 23 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 26 C -0.26 -12.07 9.14 22.34 0.20 -11.87 16 27 C -0.05 -1.80 9.78 22.55 0.22 -1.58 16 28 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.10 -0.08 6.05 -2.39 -0.01 -0.09 16 30 H 0.10 -0.02 6.19 -2.38 -0.01 -0.03 16 31 H 0.11 1.10 8.07 -2.38 -0.02 1.08 16 32 H 0.06 1.42 7.42 -2.38 -0.02 1.40 16 33 H 0.08 1.75 4.32 -2.39 -0.01 1.74 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.18 7.72 -2.39 -0.02 1.16 16 36 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.10 0.49 5.99 -2.39 -0.01 0.47 16 39 H 0.18 0.90 6.34 -2.91 -0.02 0.88 16 40 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.13 3.88 5.24 -2.91 -0.02 3.86 16 42 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 43 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 44 H 0.11 5.39 5.62 -2.91 -0.02 5.37 16 45 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -88.39 366.48 8.07 -80.32 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 1.03 Total: 19.12 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 6.63 Total: -30.10 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -1.38 Total: -82.85 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.24 Total: -33.25 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -88.39 8.07 -80.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492853987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.561 kcal (2) G-P(sol) polarization free energy of solvation -88.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds