Wall clock time and date at job start Tue Mar 31 2020 15:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.52996 * 109.47460 * 239.99823 * 2 1 3 5 5 C 1.50709 * 109.47079 * 59.99964 * 4 2 1 6 6 H 1.08001 * 119.99331 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00242 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00390 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46949 * 59.99946 * 9 7 5 11 11 H 1.48496 * 109.47648 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47026 * 300.00228 * 9 7 5 13 13 C 1.52998 * 109.47254 * 119.99772 * 2 1 3 14 14 N 1.46506 * 109.47237 * 300.00146 * 13 2 1 15 15 C 1.34773 * 119.99969 * 179.72043 * 14 13 2 16 16 O 1.21653 * 120.00244 * 0.02562 * 15 14 13 17 17 C 1.46726 * 119.99852 * 180.02562 * 15 14 13 18 18 C 1.34889 * 120.00004 * 180.02562 * 17 15 14 19 19 C 1.46816 * 119.99954 * 180.02562 * 18 17 15 20 20 N 1.31099 * 125.02177 * 180.02562 * 19 18 17 21 21 C 1.34793 * 108.92210 * 179.97438 * 20 19 18 22 22 C 1.39948 * 133.65684 * 179.97438 * 21 20 19 23 23 C 1.36562 * 119.83400 * 179.97438 * 22 21 20 24 24 C 1.38818 * 120.61792 * 0.10234 * 23 22 21 25 25 C 1.37923 * 120.52925 * 359.92650 * 24 23 22 26 26 C 1.38686 * 119.76843 * 0.02562 * 25 24 23 27 27 O 1.34818 * 125.02786 * 359.68835 * 19 18 17 28 28 H 1.09002 * 109.47712 * 299.99691 * 1 2 3 29 29 H 1.08995 * 109.47426 * 60.00418 * 1 2 3 30 30 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46786 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46766 * 299.99987 * 3 2 1 33 33 H 1.09002 * 109.47164 * 59.99980 * 3 2 1 34 34 H 1.09000 * 109.47441 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47235 * 299.99931 * 4 2 1 36 36 H 0.96994 * 120.00439 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.47671 * 180.02562 * 13 2 1 38 38 H 1.08998 * 109.47454 * 60.00483 * 13 2 1 39 39 H 0.97005 * 119.99811 * 0.02562 * 14 13 2 40 40 H 1.08004 * 120.00185 * 0.02562 * 17 15 14 41 41 H 1.07998 * 120.00267 * 359.97438 * 18 17 15 42 42 H 1.08006 * 120.08256 * 0.03406 * 22 21 20 43 43 H 1.08008 * 119.69162 * 180.02562 * 23 22 21 44 44 H 1.08005 * 119.73396 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.11372 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6274 -1.5509 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 1.7419 1.7990 -5.2571 11 1 1.7431 -0.3014 -6.4697 12 1 -0.2371 0.3973 -5.2573 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0305 2.4455 15 6 1.8726 -0.4943 3.6695 16 8 2.5682 -1.4860 3.7812 17 6 1.3830 0.1971 4.8675 18 6 1.7047 -0.2667 6.0926 19 6 1.2143 0.4248 7.2914 20 7 1.4661 0.0613 8.5255 21 6 0.8589 0.9215 9.3671 22 6 0.7852 1.0195 10.7612 23 6 0.0718 2.0331 11.3342 24 6 -0.5847 2.9689 10.5466 25 6 -0.5261 2.8912 9.1708 26 6 0.1938 1.8701 8.5688 27 8 0.4440 1.5312 7.2858 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7489 -1.2492 36 1 2.8618 -1.8823 -4.7335 37 1 3.1300 -0.7208 1.2495 38 1 1.6767 -1.7489 1.2493 39 1 0.9936 0.7579 2.3564 40 1 0.7651 1.0774 4.7684 41 1 2.3222 -1.1471 6.1918 42 1 1.2921 0.2957 11.3823 43 1 0.0168 2.1068 12.4104 44 1 -1.1452 3.7645 11.0149 45 1 -1.0391 3.6231 8.5644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492924244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:46 Heat of formation + Delta-G solvation = 6.147390 kcal Electronic energy + Delta-G solvation = -25909.816979 eV Core-core repulsion = 22086.823257 eV Total energy + Delta-G solvation = -3822.993722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.66102 -39.78530 -38.53122 -37.24825 -35.33165 -33.95683 -33.70609 -32.12041 -31.20464 -29.84021 -27.30975 -26.73291 -26.55646 -24.96309 -23.63576 -23.03381 -22.35382 -21.46074 -20.08449 -18.66337 -18.08287 -17.65023 -17.34239 -17.17695 -16.41269 -16.02060 -15.54102 -15.15324 -14.77334 -14.54397 -14.50429 -14.31785 -13.67958 -13.66803 -13.20209 -13.01415 -12.81496 -12.77473 -12.60985 -12.30711 -12.13964 -12.07902 -12.00245 -11.21363 -11.03356 -10.90699 -10.89597 -10.66517 -10.45970 -10.45364 -10.30144 -10.08942 -9.91898 -9.31124 -9.22765 -8.96999 -8.89195 -8.62165 -8.37734 -6.01832 -4.03482 -0.25033 0.74301 0.94456 1.96887 2.27077 2.99516 3.15071 3.25397 3.30579 3.36310 3.37214 3.59922 4.00965 4.33951 4.43386 4.55404 4.61393 4.67478 4.72945 4.84179 4.96327 5.33456 5.34823 5.39796 5.48914 5.55558 5.57055 5.66890 5.70486 5.79295 5.81988 5.86960 6.11701 6.13832 6.16758 6.22757 6.33703 6.46057 6.58849 6.68566 7.01361 7.03478 7.07867 7.14576 7.57697 7.61494 7.73047 7.96273 8.22280 8.38071 9.00956 9.59750 11.09482 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.033042 B = 0.001739 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.209624 B =16094.566577 C =16745.403640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.126 3.874 14 N -0.709 5.709 15 C 0.536 3.464 16 O -0.538 6.538 17 C -0.139 4.139 18 C -0.015 4.015 19 C 0.274 3.726 20 N -0.457 5.457 21 C 0.025 3.975 22 C -0.059 4.059 23 C -0.120 4.120 24 C -0.092 4.092 25 C -0.092 4.092 26 C 0.010 3.990 27 O -0.205 6.205 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.401 0.599 40 H 0.138 0.862 41 H 0.177 0.823 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 9.760 28.495 30.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.359 5.359 15 C 0.323 3.677 16 O -0.417 6.417 17 C -0.164 4.164 18 C -0.036 4.036 19 C 0.067 3.933 20 N -0.186 5.186 21 C -0.089 4.089 22 C -0.078 4.078 23 C -0.139 4.139 24 C -0.110 4.110 25 C -0.111 4.111 26 C -0.041 4.041 27 O -0.096 6.096 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.237 0.763 40 H 0.156 0.844 41 H 0.194 0.806 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.160 0.840 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.979 8.421 28.584 30.393 hybrid contribution -1.001 1.420 -1.248 2.139 sum -6.980 9.841 27.336 29.880 Atomic orbital electron populations 1.21772 0.95210 1.01254 1.00294 1.20924 0.95530 0.95905 0.95023 1.21776 1.00621 0.95835 1.00293 1.19088 0.96398 0.95239 0.89398 1.21138 1.31341 1.12124 0.90524 0.92310 1.25011 0.95292 0.95082 0.99089 1.69950 1.36809 1.22961 1.23590 0.86702 0.79129 0.79748 0.82654 1.20338 1.21392 1.20342 1.21721 0.99164 0.96156 0.82600 1.46126 1.52424 1.31623 1.05767 1.18117 0.81290 0.84619 0.83704 1.90842 1.38041 1.25840 1.86930 1.23399 0.99727 1.00441 0.92787 1.21231 0.98141 0.98521 0.85668 1.24186 0.90824 0.84216 0.94025 1.70587 1.22454 1.26626 0.98941 1.19829 0.99626 0.93844 0.95625 1.20185 0.98588 0.98706 0.90330 1.20840 0.97734 0.94592 1.00732 1.21101 0.98845 0.99183 0.91870 1.19959 0.99953 0.96588 0.94574 1.20507 1.02422 0.99821 0.81343 1.84599 1.57474 1.39973 1.27552 0.95235 0.91357 0.93280 0.93280 0.91356 0.95236 0.96282 0.96281 0.92957 0.91412 0.91410 0.76316 0.84444 0.80620 0.84442 0.84393 0.84049 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.15 0.30 -1.85 16 2 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.38 7.65 -34.44 -0.26 -13.65 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.13 2.12 4.56 -4.04 -0.02 2.10 16 14 N -0.71 -9.54 4.95 -61.61 -0.31 -9.84 16 15 C 0.54 7.40 7.75 -12.83 -0.10 7.30 16 16 O -0.54 -9.44 16.24 5.23 0.08 -9.35 16 17 C -0.14 -1.44 9.67 -37.34 -0.36 -1.80 16 18 C -0.02 -0.16 9.75 -37.30 -0.36 -0.53 16 19 C 0.27 3.17 7.90 -14.40 -0.11 3.05 16 20 N -0.46 -5.74 11.33 -9.62 -0.11 -5.85 16 21 C 0.03 0.28 7.22 -85.00 -0.61 -0.34 16 22 C -0.06 -0.47 10.06 -39.55 -0.40 -0.87 16 23 C -0.12 -0.65 9.96 -39.97 -0.40 -1.05 16 24 C -0.09 -0.48 10.03 -39.48 -0.40 -0.87 16 25 C -0.09 -0.66 10.07 -39.53 -0.40 -1.06 16 26 C 0.01 0.10 7.43 -38.49 -0.29 -0.18 16 27 O -0.20 -2.28 10.36 2.22 0.02 -2.26 16 28 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 29 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 33 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.40 4.44 6.14 -40.82 -0.25 4.19 16 40 H 0.14 1.09 7.74 -52.48 -0.41 0.68 16 41 H 0.18 1.89 7.52 -52.49 -0.39 1.49 16 42 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 44 H 0.14 0.31 8.06 -52.48 -0.42 -0.12 16 45 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -32.47 378.64 -8.40 -40.87 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.11 Total: 0.96 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -3.40 Total: -10.81 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.32 Total: -41.07 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.11 Total: -11.62 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.47 -8.40 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492924244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.022 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds