Wall clock time and date at job start Tue Mar 31 2020 15:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.52996 * 109.47460 * 239.99823 * 2 1 3 5 5 C 1.50709 * 109.47079 * 59.99964 * 4 2 1 6 6 H 1.08001 * 119.99331 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00242 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00390 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46949 * 59.99946 * 9 7 5 11 11 H 1.48496 * 109.47648 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47026 * 300.00228 * 9 7 5 13 13 C 1.52998 * 109.47254 * 119.99772 * 2 1 3 14 14 N 1.46506 * 109.47237 * 300.00146 * 13 2 1 15 15 C 1.34773 * 119.99969 * 179.72043 * 14 13 2 16 16 O 1.21653 * 120.00244 * 0.02562 * 15 14 13 17 17 C 1.46726 * 119.99852 * 180.02562 * 15 14 13 18 18 C 1.34889 * 120.00004 * 180.02562 * 17 15 14 19 19 C 1.46816 * 119.99954 * 180.02562 * 18 17 15 20 20 N 1.31099 * 125.02177 * 180.02562 * 19 18 17 21 21 C 1.34793 * 108.92210 * 179.97438 * 20 19 18 22 22 C 1.39948 * 133.65684 * 179.97438 * 21 20 19 23 23 C 1.36562 * 119.83400 * 179.97438 * 22 21 20 24 24 C 1.38818 * 120.61792 * 0.10234 * 23 22 21 25 25 C 1.37923 * 120.52925 * 359.92650 * 24 23 22 26 26 C 1.38686 * 119.76843 * 0.02562 * 25 24 23 27 27 O 1.34818 * 125.02786 * 359.68835 * 19 18 17 28 28 H 1.09002 * 109.47712 * 299.99691 * 1 2 3 29 29 H 1.08995 * 109.47426 * 60.00418 * 1 2 3 30 30 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46786 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46766 * 299.99987 * 3 2 1 33 33 H 1.09002 * 109.47164 * 59.99980 * 3 2 1 34 34 H 1.09000 * 109.47441 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47235 * 299.99931 * 4 2 1 36 36 H 0.96994 * 120.00439 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.47671 * 180.02562 * 13 2 1 38 38 H 1.08998 * 109.47454 * 60.00483 * 13 2 1 39 39 H 0.97005 * 119.99811 * 0.02562 * 14 13 2 40 40 H 1.08004 * 120.00185 * 0.02562 * 17 15 14 41 41 H 1.07998 * 120.00267 * 359.97438 * 18 17 15 42 42 H 1.08006 * 120.08256 * 0.03406 * 22 21 20 43 43 H 1.08008 * 119.69162 * 180.02562 * 23 22 21 44 44 H 1.08005 * 119.73396 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.11372 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6274 -1.5509 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 1.7419 1.7990 -5.2571 11 1 1.7431 -0.3014 -6.4697 12 1 -0.2371 0.3973 -5.2573 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0305 2.4455 15 6 1.8726 -0.4943 3.6695 16 8 2.5682 -1.4860 3.7812 17 6 1.3830 0.1971 4.8675 18 6 1.7047 -0.2667 6.0926 19 6 1.2143 0.4248 7.2914 20 7 1.4661 0.0613 8.5255 21 6 0.8589 0.9215 9.3671 22 6 0.7852 1.0195 10.7612 23 6 0.0718 2.0331 11.3342 24 6 -0.5847 2.9689 10.5466 25 6 -0.5261 2.8912 9.1708 26 6 0.1938 1.8701 8.5688 27 8 0.4440 1.5312 7.2858 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7489 -1.2492 36 1 2.8618 -1.8823 -4.7335 37 1 3.1300 -0.7208 1.2495 38 1 1.6767 -1.7489 1.2493 39 1 0.9936 0.7579 2.3564 40 1 0.7651 1.0774 4.7684 41 1 2.3222 -1.1471 6.1918 42 1 1.2921 0.2957 11.3823 43 1 0.0168 2.1068 12.4104 44 1 -1.1452 3.7645 11.0149 45 1 -1.0391 3.6231 8.5644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492924244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:45 Heat of formation + Delta-G solvation = -15.677554 kcal Electronic energy + Delta-G solvation = -25910.763379 eV Core-core repulsion = 22086.823257 eV Total energy + Delta-G solvation = -3823.940123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.37292 -40.99536 -39.09400 -38.70886 -36.09522 -35.28164 -34.82776 -33.92192 -31.73532 -30.54778 -29.13812 -28.02355 -27.94260 -26.07459 -24.68177 -24.24964 -23.08116 -22.45430 -21.12062 -19.85643 -18.99427 -18.47479 -18.35820 -18.20634 -17.94069 -16.87638 -16.72202 -16.42286 -16.38268 -15.54285 -15.21086 -15.13132 -14.98427 -14.76426 -14.68713 -14.27931 -13.92014 -13.79840 -13.61120 -13.55020 -13.14290 -12.96972 -12.83000 -12.74709 -12.60479 -12.57532 -12.30798 -12.21574 -11.99827 -11.60756 -11.52278 -11.34980 -11.24994 -10.93329 -10.84223 -10.49409 -10.13171 -9.86559 -9.32578 -8.12771 -6.20549 -0.99660 0.18224 0.22792 1.25004 1.43438 1.45256 1.46792 1.52477 1.99603 2.18994 2.45247 2.62587 2.73292 3.21638 3.38960 3.68844 3.87690 3.91981 3.99470 4.08050 4.09737 4.20212 4.23881 4.25517 4.39020 4.66105 4.70748 4.73660 4.77226 4.81767 4.95939 4.98228 5.01025 5.10771 5.13205 5.14528 5.29366 5.36609 5.37049 5.46267 5.52704 5.55220 5.58263 5.67625 5.82035 5.91290 6.31206 6.39539 6.50170 6.94592 7.13450 7.47150 8.99344 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.033042 B = 0.001739 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.209624 B =16094.566577 C =16745.403640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.292 1.292 12 H -0.267 1.267 13 C 0.139 3.861 14 N -0.696 5.696 15 C 0.539 3.461 16 O -0.581 6.581 17 C -0.129 4.129 18 C -0.007 4.007 19 C 0.259 3.741 20 N -0.482 5.482 21 C -0.012 4.012 22 C -0.075 4.075 23 C -0.108 4.108 24 C -0.075 4.075 25 C -0.102 4.102 26 C -0.011 4.011 27 O -0.209 6.209 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.072 0.928 34 H -0.013 1.013 35 H -0.013 1.013 36 H 0.259 0.741 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.417 0.583 40 H 0.170 0.830 41 H 0.168 0.832 42 H 0.145 0.855 43 H 0.174 0.826 44 H 0.182 0.818 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.345 13.186 30.911 34.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.066 4.066 3 C -0.181 4.181 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.218 1.218 12 H -0.192 1.192 13 C 0.015 3.985 14 N -0.348 5.348 15 C 0.327 3.673 16 O -0.462 6.462 17 C -0.153 4.153 18 C -0.027 4.027 19 C 0.053 3.947 20 N -0.212 5.212 21 C -0.126 4.126 22 C -0.094 4.094 23 C -0.127 4.127 24 C -0.093 4.093 25 C -0.121 4.121 26 C -0.062 4.062 27 O -0.100 6.100 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.005 0.995 35 H 0.005 0.995 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.256 0.744 40 H 0.187 0.813 41 H 0.186 0.814 42 H 0.163 0.837 43 H 0.192 0.808 44 H 0.199 0.801 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.431 11.894 31.016 34.272 hybrid contribution -0.266 0.378 -1.775 1.834 sum -8.697 12.273 29.242 32.884 Atomic orbital electron populations 1.21714 0.93516 1.01062 1.01771 1.20721 0.96770 0.96350 0.92758 1.21717 0.99989 0.94582 1.01769 1.18976 0.94342 0.94239 0.92296 1.21575 1.30460 1.12118 0.91094 0.90901 1.25946 0.95700 0.95885 1.02718 1.70114 1.38741 1.24947 1.24103 0.85600 0.78930 0.78739 0.78360 1.19170 1.21816 1.19186 1.21296 0.98131 0.95552 0.83515 1.45854 1.52446 1.31834 1.04632 1.18560 0.80303 0.83979 0.84427 1.90832 1.40003 1.27907 1.87500 1.23216 1.00283 1.01116 0.90706 1.21134 0.97609 0.98105 0.85874 1.24103 0.91800 0.84916 0.93872 1.70505 1.23172 1.27712 0.99785 1.20274 1.00927 0.94461 0.96914 1.20524 0.99533 1.00046 0.89314 1.21326 0.95728 0.93072 1.02614 1.21670 0.97322 0.99276 0.91033 1.20423 0.99707 0.96203 0.95764 1.21042 1.03380 1.00825 0.80913 1.84547 1.57507 1.39735 1.28260 0.90935 0.92599 0.94383 0.94376 0.92598 0.90937 0.99499 0.99501 0.93228 0.93063 0.93075 0.74396 0.81281 0.81441 0.83699 0.80842 0.80076 0.82377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 2 C -0.07 -2.38 0.54 -52.18 -0.03 -2.41 16 3 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 4 C 0.04 1.95 4.04 29.85 0.12 2.07 16 5 C -0.51 -27.21 7.65 25.60 0.20 -27.02 16 6 H 0.07 3.58 5.68 -2.91 -0.02 3.57 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -56.78 13.29 21.45 0.28 -56.49 16 9 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 13 C 0.14 4.73 4.56 86.38 0.39 5.13 16 14 N -0.70 -17.71 4.95 -467.07 -2.31 -20.03 16 15 C 0.54 14.53 7.75 86.46 0.67 15.20 16 16 O -0.58 -20.90 16.24 -4.20 -0.07 -20.97 16 17 C -0.13 -2.50 9.67 23.72 0.23 -2.27 16 18 C -0.01 -0.14 9.75 23.75 0.23 0.09 16 19 C 0.26 6.05 7.90 87.05 0.69 6.73 16 20 N -0.48 -12.45 11.33 -298.26 -3.38 -15.82 16 21 C -0.01 -0.26 7.22 39.70 0.29 0.03 16 22 C -0.08 -1.10 10.06 22.29 0.22 -0.87 16 23 C -0.11 -0.81 9.96 22.02 0.22 -0.59 16 24 C -0.08 -0.47 10.03 22.33 0.22 -0.25 16 25 C -0.10 -1.19 10.07 22.30 0.22 -0.97 16 26 C -0.01 -0.22 7.43 22.98 0.17 -0.05 16 27 O -0.21 -4.53 10.36 -14.96 -0.15 -4.68 16 28 H 0.07 1.70 6.86 -2.39 -0.02 1.68 16 29 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 33 H 0.07 1.69 6.86 -2.39 -0.02 1.68 16 34 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 35 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 36 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.42 7.81 6.14 -92.70 -0.57 7.24 16 40 H 0.17 2.18 7.74 -2.91 -0.02 2.16 16 41 H 0.17 3.81 7.52 -2.91 -0.02 3.78 16 42 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.17 0.03 8.06 -2.91 -0.02 0.01 16 44 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 45 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -75.55 378.64 2.31 -73.23 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.45 Total: 11.24 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 5.47 Total: -11.78 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -5.41 Total: -92.34 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.22 Total: -25.65 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -75.55 2.31 -73.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492924244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.557 kcal (2) G-P(sol) polarization free energy of solvation -75.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds