Wall clock time and date at job start Tue Mar 31 2020 15:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47461 * 2 1 4 4 C 1.53005 * 109.47030 * 240.00305 * 2 1 3 5 5 C 1.50696 * 109.47348 * 60.00092 * 4 2 1 6 6 H 1.07998 * 119.99838 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00069 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00302 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00113 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47060 * 89.99576 * 9 7 5 11 11 H 1.48492 * 109.47053 * 209.99614 * 9 7 5 12 12 H 1.48504 * 109.46969 * 329.99383 * 9 7 5 13 13 C 1.52999 * 109.47342 * 120.00568 * 2 1 3 14 14 N 1.46502 * 109.46638 * 299.99905 * 13 2 1 15 15 C 1.34773 * 120.00210 * 180.02562 * 14 13 2 16 16 O 1.21666 * 119.99817 * 359.97438 * 15 14 13 17 17 C 1.46731 * 120.00351 * 179.97438 * 15 14 13 18 18 C 1.34892 * 119.99916 * 173.37498 * 17 15 14 19 19 C 1.46810 * 120.00135 * 352.41556 * 18 17 15 20 20 N 1.31095 * 125.02697 * 136.92933 * 19 18 17 21 21 C 1.34785 * 108.92427 * 179.97438 * 20 19 18 22 22 C 1.39954 * 133.64984 * 179.97438 * 21 20 19 23 23 C 1.36566 * 119.83044 * 180.02562 * 22 21 20 24 24 C 1.38809 * 120.61566 * 0.02562 * 23 22 21 25 25 C 1.37933 * 120.53567 * 359.97438 * 24 23 22 26 26 C 1.38681 * 119.76817 * 359.97438 * 25 24 23 27 27 O 1.34822 * 125.02474 * 316.92260 * 19 18 17 28 28 H 1.09000 * 109.47551 * 300.00116 * 1 2 3 29 29 H 1.09004 * 109.47139 * 60.00046 * 1 2 3 30 30 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47443 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46906 * 300.00096 * 3 2 1 33 33 H 1.08996 * 109.46672 * 59.99897 * 3 2 1 34 34 H 1.09001 * 109.47291 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47006 * 299.99744 * 4 2 1 36 36 H 0.96995 * 120.00754 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47665 * 180.02562 * 13 2 1 38 38 H 1.08997 * 109.47220 * 59.99363 * 13 2 1 39 39 H 0.97001 * 120.00370 * 359.97438 * 14 13 2 40 40 H 1.07995 * 119.99719 * 353.37151 * 17 15 14 41 41 H 1.08003 * 119.99568 * 172.41645 * 18 17 15 42 42 H 1.08000 * 120.08562 * 359.97438 * 22 21 20 43 43 H 1.08002 * 119.68959 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.73177 * 179.70143 * 24 23 22 45 45 H 1.08004 * 120.11575 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6263 -1.5514 -3.8528 9 14 1.2471 0.3981 -5.2572 10 1 2.2250 1.4398 -5.6619 11 1 1.0818 -0.5812 -6.3611 12 1 -0.0611 1.0356 -4.9611 13 6 2.0400 -0.7214 1.2491 14 7 1.5516 -0.0308 2.4453 15 6 1.8776 -0.4909 3.6694 16 8 2.5771 -1.4801 3.7810 17 6 1.3890 0.2011 4.8675 18 6 1.6016 -0.3322 6.0882 19 6 2.1713 -1.6796 6.2116 20 7 3.1052 -2.0265 7.0636 21 6 3.3839 -3.3348 6.8981 22 6 4.2747 -4.2187 7.5177 23 6 4.3266 -5.5231 7.1167 24 6 3.5032 -5.9828 6.0982 25 6 2.6177 -5.1293 5.4737 26 6 2.5485 -3.8011 5.8664 27 8 1.8113 -2.7432 5.4654 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1299 -0.7216 -1.2491 35 1 1.6766 -1.7489 -1.2493 36 1 2.8607 -1.8828 -4.7337 37 1 3.1299 -0.7210 1.2494 38 1 1.6766 -1.7490 1.2491 39 1 0.9942 0.7581 2.3564 40 1 0.8592 1.1373 4.7720 41 1 1.3526 0.2322 6.9747 42 1 4.9202 -3.8698 8.3102 43 1 5.0146 -6.2033 7.5967 44 1 3.5595 -7.0162 5.7891 45 1 1.9805 -5.4942 4.6816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492924245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:50 Heat of formation + Delta-G solvation = 12.787094 kcal Electronic energy + Delta-G solvation = -27132.312354 eV Core-core repulsion = 23309.606551 eV Total energy + Delta-G solvation = -3822.705803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.16002 -39.77683 -38.09671 -37.22262 -34.90061 -33.75051 -33.65922 -32.12545 -30.79076 -29.45822 -27.27727 -26.65659 -26.56268 -24.69119 -23.24664 -22.99297 -21.97109 -21.56938 -19.95910 -18.44321 -17.94107 -17.55031 -17.04831 -16.55653 -16.36450 -15.85863 -15.12212 -15.09391 -14.64018 -14.45153 -14.23990 -13.90474 -13.65250 -13.60404 -13.23674 -12.91377 -12.78752 -12.52296 -12.41416 -12.22335 -12.09164 -11.65664 -11.52245 -11.20745 -11.05230 -10.88506 -10.68017 -10.52057 -10.45590 -10.29495 -10.21572 -10.01353 -9.92491 -9.23138 -8.96776 -8.86253 -8.81234 -8.38894 -8.34578 -6.02749 -4.04377 0.17313 1.02562 1.21060 2.48659 2.56589 3.23350 3.28726 3.31150 3.36057 3.37839 3.55645 3.69211 4.42459 4.43386 4.63695 4.67629 4.85350 5.00906 5.06642 5.17214 5.27418 5.32671 5.41586 5.50717 5.57018 5.63734 5.70263 5.77792 5.96119 6.11217 6.16187 6.17289 6.21007 6.22513 6.24463 6.33549 6.47916 6.51834 6.58184 6.69159 7.00979 7.02992 7.07631 7.57218 7.59510 7.62303 7.72152 7.95562 8.27448 8.37439 9.00388 9.58962 11.08720 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.002475 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.895298 B =11310.178689 C =12447.982048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.128 3.872 14 N -0.709 5.709 15 C 0.522 3.478 16 O -0.528 6.528 17 C -0.146 4.146 18 C -0.016 4.016 19 C 0.287 3.713 20 N -0.474 5.474 21 C 0.024 3.976 22 C -0.065 4.065 23 C -0.125 4.125 24 C -0.098 4.098 25 C -0.091 4.091 26 C 0.022 3.978 27 O -0.174 6.174 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.260 0.740 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.400 0.600 40 H 0.154 0.846 41 H 0.172 0.828 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 -0.991 22.879 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.006 3.994 14 N -0.359 5.359 15 C 0.308 3.692 16 O -0.406 6.406 17 C -0.170 4.170 18 C -0.037 4.037 19 C 0.080 3.920 20 N -0.205 5.205 21 C -0.091 4.091 22 C -0.084 4.084 23 C -0.144 4.144 24 C -0.116 4.116 25 C -0.109 4.109 26 C -0.029 4.029 27 O -0.063 6.063 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.236 0.764 40 H 0.171 0.829 41 H 0.190 0.810 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.742 -1.435 23.201 23.311 hybrid contribution -0.806 0.475 -1.638 1.886 sum -2.548 -0.960 21.564 21.735 Atomic orbital electron populations 1.21765 0.95210 1.01202 1.00278 1.20908 0.95504 0.95867 0.94994 1.21768 1.00585 0.95850 1.00284 1.19089 0.96350 0.95221 0.89476 1.21168 1.31251 1.12082 0.90491 0.92241 1.25017 0.95314 0.95053 0.99113 1.69959 1.36932 1.22986 1.23488 0.86645 0.79182 0.79417 0.83046 1.20753 1.21320 1.19935 1.21663 0.98965 0.96060 0.82743 1.46096 1.52374 1.31723 1.05754 1.18485 0.81807 0.84691 0.84177 1.90869 1.37866 1.25580 1.86275 1.23601 0.99443 1.01577 0.92365 1.21240 0.96154 0.87454 0.98842 1.23847 0.92464 0.89796 0.85916 1.70515 1.14330 1.11691 1.23934 1.19751 1.00301 0.90565 0.98471 1.20079 0.96939 0.91854 0.99503 1.20739 1.00201 0.95254 0.98201 1.21017 0.95059 0.99583 0.95917 1.19949 1.01290 0.88150 1.01559 1.20460 0.94980 0.90024 0.97468 1.84746 1.53316 1.16554 1.51717 0.95222 0.91356 0.93360 0.93348 0.91354 0.95214 0.96375 0.96368 0.93004 0.91720 0.91682 0.76429 0.82880 0.81033 0.84973 0.84815 0.84409 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.15 0.30 -1.86 16 2 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.43 7.65 -34.44 -0.26 -13.69 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 13 C 0.13 2.23 4.56 -4.04 -0.02 2.21 16 14 N -0.71 -9.72 4.95 -61.61 -0.31 -10.03 16 15 C 0.52 7.49 7.57 -12.83 -0.10 7.39 16 16 O -0.53 -9.84 12.60 -19.28 -0.24 -10.08 16 17 C -0.15 -1.39 10.08 -37.34 -0.38 -1.77 16 18 C -0.02 -0.16 10.26 -37.31 -0.38 -0.54 16 19 C 0.29 4.16 6.32 -14.40 -0.09 4.07 16 20 N -0.47 -7.32 11.33 -9.62 -0.11 -7.43 16 21 C 0.02 0.35 7.22 -85.00 -0.61 -0.26 16 22 C -0.06 -0.75 10.06 -39.54 -0.40 -1.15 16 23 C -0.12 -1.18 9.96 -39.97 -0.40 -1.57 16 24 C -0.10 -0.95 10.03 -39.48 -0.40 -1.35 16 25 C -0.09 -1.13 10.07 -39.53 -0.40 -1.53 16 26 C 0.02 0.35 7.43 -38.49 -0.29 0.06 16 27 O -0.17 -2.85 8.15 -22.27 -0.18 -3.03 16 28 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 29 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 33 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.40 4.39 6.14 -40.82 -0.25 4.14 16 40 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 42 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 45 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -34.66 372.80 -9.08 -43.74 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.16 Total: 1.84 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -3.41 Total: -11.06 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.32 Total: -43.03 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.42 Total: -13.12 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.66 -9.08 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492924245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.524 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds