Wall clock time and date at job start Tue Mar 31 2020 15:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47461 * 2 1 4 4 C 1.53005 * 109.47030 * 240.00305 * 2 1 3 5 5 C 1.50696 * 109.47348 * 60.00092 * 4 2 1 6 6 H 1.07998 * 119.99838 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00069 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00302 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00113 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47060 * 89.99576 * 9 7 5 11 11 H 1.48492 * 109.47053 * 209.99614 * 9 7 5 12 12 H 1.48504 * 109.46969 * 329.99383 * 9 7 5 13 13 C 1.52999 * 109.47342 * 120.00568 * 2 1 3 14 14 N 1.46502 * 109.46638 * 299.99905 * 13 2 1 15 15 C 1.34773 * 120.00210 * 180.02562 * 14 13 2 16 16 O 1.21666 * 119.99817 * 359.97438 * 15 14 13 17 17 C 1.46731 * 120.00351 * 179.97438 * 15 14 13 18 18 C 1.34892 * 119.99916 * 173.37498 * 17 15 14 19 19 C 1.46810 * 120.00135 * 352.41556 * 18 17 15 20 20 N 1.31095 * 125.02697 * 136.92933 * 19 18 17 21 21 C 1.34785 * 108.92427 * 179.97438 * 20 19 18 22 22 C 1.39954 * 133.64984 * 179.97438 * 21 20 19 23 23 C 1.36566 * 119.83044 * 180.02562 * 22 21 20 24 24 C 1.38809 * 120.61566 * 0.02562 * 23 22 21 25 25 C 1.37933 * 120.53567 * 359.97438 * 24 23 22 26 26 C 1.38681 * 119.76817 * 359.97438 * 25 24 23 27 27 O 1.34822 * 125.02474 * 316.92260 * 19 18 17 28 28 H 1.09000 * 109.47551 * 300.00116 * 1 2 3 29 29 H 1.09004 * 109.47139 * 60.00046 * 1 2 3 30 30 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47443 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46906 * 300.00096 * 3 2 1 33 33 H 1.08996 * 109.46672 * 59.99897 * 3 2 1 34 34 H 1.09001 * 109.47291 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47006 * 299.99744 * 4 2 1 36 36 H 0.96995 * 120.00754 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47665 * 180.02562 * 13 2 1 38 38 H 1.08997 * 109.47220 * 59.99363 * 13 2 1 39 39 H 0.97001 * 120.00370 * 359.97438 * 14 13 2 40 40 H 1.07995 * 119.99719 * 353.37151 * 17 15 14 41 41 H 1.08003 * 119.99568 * 172.41645 * 18 17 15 42 42 H 1.08000 * 120.08562 * 359.97438 * 22 21 20 43 43 H 1.08002 * 119.68959 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.73177 * 179.70143 * 24 23 22 45 45 H 1.08004 * 120.11575 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6263 -1.5514 -3.8528 9 14 1.2471 0.3981 -5.2572 10 1 2.2250 1.4398 -5.6619 11 1 1.0818 -0.5812 -6.3611 12 1 -0.0611 1.0356 -4.9611 13 6 2.0400 -0.7214 1.2491 14 7 1.5516 -0.0308 2.4453 15 6 1.8776 -0.4909 3.6694 16 8 2.5771 -1.4801 3.7810 17 6 1.3890 0.2011 4.8675 18 6 1.6016 -0.3322 6.0882 19 6 2.1713 -1.6796 6.2116 20 7 3.1052 -2.0265 7.0636 21 6 3.3839 -3.3348 6.8981 22 6 4.2747 -4.2187 7.5177 23 6 4.3266 -5.5231 7.1167 24 6 3.5032 -5.9828 6.0982 25 6 2.6177 -5.1293 5.4737 26 6 2.5485 -3.8011 5.8664 27 8 1.8113 -2.7432 5.4654 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1299 -0.7216 -1.2491 35 1 1.6766 -1.7489 -1.2493 36 1 2.8607 -1.8828 -4.7337 37 1 3.1299 -0.7210 1.2494 38 1 1.6766 -1.7490 1.2491 39 1 0.9942 0.7581 2.3564 40 1 0.8592 1.1373 4.7720 41 1 1.3526 0.2322 6.9747 42 1 4.9202 -3.8698 8.3102 43 1 5.0146 -6.2033 7.5967 44 1 3.5595 -7.0162 5.7891 45 1 1.9805 -5.4942 4.6816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492924245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:49 Heat of formation + Delta-G solvation = -10.899267 kcal Electronic energy + Delta-G solvation = -27133.339471 eV Core-core repulsion = 23309.606551 eV Total energy + Delta-G solvation = -3823.732921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -44.15089 -40.97690 -39.05246 -38.65270 -35.90126 -35.30016 -34.58711 -33.94219 -31.67899 -30.40369 -29.16406 -28.00268 -27.96781 -25.88672 -24.71898 -24.11832 -23.02662 -22.67037 -21.05554 -19.79794 -18.88377 -18.69683 -18.38813 -17.97057 -17.61475 -17.02500 -16.47187 -16.40125 -16.11769 -15.48980 -15.19005 -15.11235 -14.86196 -14.76625 -14.60873 -14.27318 -13.95641 -13.85204 -13.81775 -13.43349 -13.16857 -12.88733 -12.73442 -12.62834 -12.58117 -12.47901 -12.35000 -12.24421 -11.99575 -11.55716 -11.52937 -11.27560 -11.03227 -10.94598 -10.84611 -10.53295 -10.10315 -9.77894 -9.28502 -8.15578 -6.23863 -0.69833 0.15717 0.29312 1.41778 1.42309 1.50398 1.52681 1.65148 2.19245 2.22982 2.43910 2.65474 2.81578 3.18943 3.50564 3.74077 3.90448 3.95649 4.05149 4.14330 4.17898 4.20667 4.30146 4.37434 4.48699 4.66697 4.68882 4.73314 4.76171 4.89796 4.95645 4.99997 5.07020 5.08703 5.11729 5.27547 5.34622 5.36944 5.37065 5.43879 5.48848 5.52465 5.54802 5.71535 5.78360 5.88161 6.27954 6.54202 6.55454 6.91622 7.20905 7.44278 8.97160 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.002475 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.895298 B =11310.178689 C =12447.982048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.257 1.257 13 C 0.144 3.856 14 N -0.695 5.695 15 C 0.512 3.488 16 O -0.578 6.578 17 C -0.135 4.135 18 C -0.015 4.015 19 C 0.269 3.731 20 N -0.497 5.497 21 C -0.007 4.007 22 C -0.078 4.078 23 C -0.113 4.113 24 C -0.085 4.085 25 C -0.116 4.116 26 C -0.016 4.016 27 O -0.199 6.199 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.076 0.924 34 H -0.018 1.018 35 H -0.017 1.017 36 H 0.259 0.741 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.418 0.582 40 H 0.212 0.788 41 H 0.220 0.780 42 H 0.150 0.850 43 H 0.176 0.824 44 H 0.175 0.825 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 0.952 24.593 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.582 5.582 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.181 1.181 13 C 0.020 3.980 14 N -0.347 5.347 15 C 0.301 3.699 16 O -0.459 6.459 17 C -0.157 4.157 18 C -0.035 4.035 19 C 0.062 3.938 20 N -0.228 5.228 21 C -0.121 4.121 22 C -0.096 4.096 23 C -0.132 4.132 24 C -0.103 4.103 25 C -0.135 4.135 26 C -0.067 4.067 27 O -0.089 6.089 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.001 0.999 35 H 0.001 0.999 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.257 0.743 40 H 0.229 0.771 41 H 0.237 0.763 42 H 0.168 0.832 43 H 0.193 0.807 44 H 0.192 0.808 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.065 0.548 24.936 25.130 hybrid contribution -0.322 -0.272 -2.115 2.157 sum -3.386 0.276 22.821 23.072 Atomic orbital electron populations 1.21701 0.93338 1.00896 1.01961 1.20698 0.96850 0.96369 0.92451 1.21708 0.99786 0.94448 1.02016 1.18978 0.94098 0.94140 0.92628 1.21591 1.30419 1.12089 0.90952 0.90688 1.25983 0.95679 0.95842 1.02854 1.70126 1.38876 1.25042 1.24117 0.85521 0.79255 0.78081 0.78651 1.20131 1.21649 1.18136 1.21155 0.97448 0.95230 0.84173 1.45822 1.52443 1.31966 1.04501 1.19399 0.80924 0.84164 0.85442 1.90871 1.40047 1.27949 1.87013 1.23796 0.99548 1.03005 0.89380 1.21969 0.95158 0.85524 1.00860 1.24894 0.92453 0.91108 0.85331 1.70465 1.15205 1.12177 1.24943 1.20254 1.01491 0.91021 0.99330 1.20497 0.96696 0.92475 0.99958 1.21256 0.99779 0.94888 0.97257 1.21533 0.93228 1.00733 0.94814 1.20320 1.02745 0.87856 1.02570 1.21005 0.96074 0.90936 0.98666 1.84694 1.54087 1.17419 1.52684 0.90630 0.92449 0.94746 0.94713 0.92414 0.90568 0.99921 0.99895 0.93181 0.94114 0.94124 0.74252 0.77110 0.76325 0.83237 0.80671 0.80753 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 2 C -0.06 -2.35 0.54 -52.18 -0.03 -2.38 16 3 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 4 C 0.04 2.00 4.04 29.85 0.12 2.12 16 5 C -0.51 -27.35 7.65 25.60 0.20 -27.16 16 6 H 0.08 3.71 5.68 -2.91 -0.02 3.69 16 7 C -0.01 -0.39 5.46 84.65 0.46 0.08 16 8 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 9 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 13 C 0.14 5.17 4.56 86.38 0.39 5.57 16 14 N -0.69 -18.00 4.95 -467.07 -2.31 -20.32 16 15 C 0.51 14.25 7.57 86.46 0.65 14.90 16 16 O -0.58 -22.45 12.60 19.19 0.24 -22.20 16 17 C -0.13 -2.12 10.08 23.72 0.24 -1.88 16 18 C -0.02 -0.27 10.26 23.74 0.24 -0.02 16 19 C 0.27 7.94 6.32 87.05 0.55 8.49 16 20 N -0.50 -15.79 11.33 -298.26 -3.38 -19.17 16 21 C -0.01 -0.22 7.22 39.71 0.29 0.06 16 22 C -0.08 -1.77 10.06 22.29 0.22 -1.55 16 23 C -0.11 -1.91 9.96 22.02 0.22 -1.69 16 24 C -0.09 -1.56 10.03 22.33 0.22 -1.34 16 25 C -0.12 -3.03 10.07 22.30 0.22 -2.81 16 26 C -0.02 -0.52 7.43 22.98 0.17 -0.35 16 27 O -0.20 -6.89 8.15 8.51 0.07 -6.82 16 28 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 29 H 0.06 2.00 6.62 -2.38 -0.02 1.98 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 2.00 6.62 -2.38 -0.02 1.98 16 33 H 0.08 1.75 6.86 -2.39 -0.02 1.73 16 34 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 35 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 36 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.42 7.50 6.14 -92.71 -0.57 6.93 16 40 H 0.21 0.78 8.06 -2.91 -0.02 0.75 16 41 H 0.22 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 43 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -84.47 372.80 2.71 -81.76 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.44 Total: 13.27 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 5.34 Total: -14.69 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -5.41 Total: -96.76 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: 0.31 Total: -29.03 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -84.47 2.71 -81.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492924245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.862 kcal (2) G-P(sol) polarization free energy of solvation -84.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds