Wall clock time and date at job start Tue Mar 31 2020 15:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33411 * 119.99869 * 2 1 4 4 C 1.46333 * 119.99737 * 180.02562 * 3 2 1 5 5 C 1.35212 * 119.99778 * 185.27663 * 4 3 2 6 6 C 1.46204 * 120.00157 * 353.18724 * 5 4 3 7 7 O 1.21724 * 120.00138 * 5.83424 * 6 5 4 8 8 N 1.34782 * 120.00127 * 185.83657 * 6 5 4 9 9 C 1.39300 * 120.00043 * 185.14021 * 8 6 5 10 10 C 1.39169 * 119.92799 * 214.01537 * 9 8 6 11 11 C 1.37652 * 120.07277 * 179.97438 * 10 9 8 12 12 C 1.39765 * 119.92486 * 359.97255 * 11 10 9 13 13 C 1.47582 * 120.06502 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00510 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99814 * 180.02562 * 13 12 11 16 16 C 1.46504 * 120.00342 * 179.97438 * 15 13 12 17 17 H 1.08993 * 109.46678 * 34.99407 * 16 15 13 18 18 C 1.53005 * 109.47013 * 274.99679 * 16 15 13 19 19 C 1.50692 * 109.47394 * 154.99703 * 16 15 13 20 20 H 1.08002 * 120.00371 * 0.02562 * 19 16 15 21 21 C 1.37884 * 120.00168 * 180.27191 * 19 16 15 22 22 N 1.31509 * 119.99549 * 359.73125 * 21 19 16 23 23 Si 1.86794 * 120.00043 * 179.72139 * 21 19 16 24 24 H 1.48505 * 109.47014 * 90.00754 * 23 21 19 25 25 H 1.48501 * 109.47370 * 210.00336 * 23 21 19 26 26 H 1.48500 * 109.47729 * 330.00868 * 23 21 19 27 27 C 1.39752 * 119.86170 * 0.25381 * 12 11 10 28 28 C 1.37657 * 119.92784 * 359.51600 * 27 12 11 29 29 H 1.08999 * 109.47520 * 300.00116 * 1 2 3 30 30 H 1.09004 * 109.46898 * 60.00425 * 1 2 3 31 31 H 1.09002 * 109.47391 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.99809 * 180.02562 * 2 1 3 33 33 H 1.07999 * 120.00300 * 359.97438 * 3 2 1 34 34 H 1.07995 * 120.00224 * 5.27121 * 4 3 2 35 35 H 1.08002 * 120.00055 * 173.18908 * 5 4 3 36 36 H 0.96999 * 119.99651 * 5.13079 * 8 6 5 37 37 H 1.08000 * 119.96655 * 359.97075 * 10 9 8 38 38 H 1.08000 * 120.03860 * 179.97438 * 11 10 9 39 39 H 0.97006 * 119.99865 * 359.97438 * 15 13 12 40 40 H 1.09006 * 109.46812 * 59.99365 * 18 16 15 41 41 H 1.08999 * 109.46952 * 179.97438 * 18 16 15 42 42 H 1.08998 * 109.46775 * 300.00025 * 18 16 15 43 43 H 0.97000 * 119.99817 * 179.97438 * 22 21 19 44 44 H 1.07998 * 120.03820 * 179.72311 * 27 12 11 45 45 H 1.07996 * 119.96202 * 180.23367 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1740 1.1554 0.0000 4 6 3.6374 1.1554 -0.0006 5 6 4.3134 2.3213 0.1071 6 6 3.5902 3.5915 0.0742 7 8 2.3731 3.5986 0.0569 8 7 4.2710 4.7547 0.0629 9 6 3.5846 5.9644 0.1396 10 6 4.0673 7.0807 -0.5367 11 6 3.3910 8.2775 -0.4634 12 6 2.2181 8.3704 0.2909 13 6 1.4909 9.6520 0.3722 14 8 1.9122 10.6286 -0.2170 15 7 0.3602 9.7403 1.1003 16 6 -0.3614 11.0126 1.1815 17 1 -0.2812 11.5371 0.2295 18 6 0.2460 11.8736 2.2910 19 6 -1.8128 10.7483 1.4886 20 1 -2.1628 9.7339 1.6115 21 6 -2.6952 11.8011 1.6077 22 7 -2.2691 13.0362 1.4585 23 14 -4.4959 11.4729 1.9807 24 1 -4.7021 11.4581 3.4513 25 1 -5.3298 12.5419 1.3748 26 1 -4.8875 10.1578 1.4128 27 6 1.7386 7.2487 0.9728 28 6 2.4169 6.0536 0.8915 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 2.0470 -0.9353 -0.0004 33 1 1.6341 2.0907 -0.0004 34 1 4.1773 0.2241 -0.0869 35 1 5.3878 2.3144 0.2175 36 1 5.2391 4.7494 0.0014 37 1 4.9735 7.0082 -1.1197 38 1 3.7664 9.1436 -0.9881 39 1 0.0243 8.9612 1.5707 40 1 1.2959 12.0648 2.0688 41 1 -0.2907 12.8204 2.3511 42 1 0.1658 11.3490 3.2430 43 1 -2.8899 13.7768 1.5419 44 1 0.8349 7.3185 1.5601 45 1 2.0448 5.1855 1.4151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493200121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:32 Heat of formation + Delta-G solvation = -4.883671 kcal Electronic energy + Delta-G solvation = -26170.954991 eV Core-core repulsion = 22347.482926 eV Total energy + Delta-G solvation = -3823.472065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86406 -39.40347 -37.92574 -35.96464 -34.89675 -34.70460 -32.75182 -32.43335 -30.95467 -30.18584 -28.53878 -27.38390 -25.23159 -24.41767 -22.87949 -22.41454 -20.92292 -20.33473 -20.13217 -19.44906 -18.04525 -17.44766 -17.33587 -15.89880 -15.71819 -15.26119 -15.11972 -14.82749 -14.58115 -14.35874 -14.15309 -13.88256 -13.68079 -13.59161 -13.32237 -13.20891 -12.98878 -12.67560 -12.38232 -12.31404 -11.92393 -11.78351 -11.65505 -11.21346 -11.11218 -11.07217 -10.91377 -10.71333 -10.40474 -10.27758 -10.20576 -9.64748 -9.09209 -9.00576 -8.94795 -8.72874 -8.53018 -8.18807 -7.83008 -6.09457 -4.18482 0.30091 1.01474 1.44845 2.30033 2.78325 3.00751 3.26946 3.33669 3.36351 3.40745 4.11126 4.22745 4.34675 4.41358 4.44838 4.78232 4.83586 4.91483 4.98495 5.09810 5.22865 5.26460 5.31918 5.35639 5.42174 5.43716 5.50642 5.57647 5.74839 5.95863 6.04607 6.17244 6.22576 6.36757 6.47086 6.53334 6.62993 6.86309 6.95480 7.00651 7.11412 7.18299 7.48424 7.59895 7.72905 7.89155 7.95014 8.17719 8.69117 8.80975 9.14136 9.48838 10.96636 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.002421 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.874771 B =11562.819494 C =13529.968976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.125 4.125 3 C -0.191 4.191 4 C -0.015 4.015 5 C -0.230 4.230 6 C 0.547 3.453 7 O -0.515 6.515 8 N -0.668 5.668 9 C 0.157 3.843 10 C -0.155 4.155 11 C -0.045 4.045 12 C -0.135 4.135 13 C 0.543 3.457 14 O -0.554 6.554 15 N -0.702 5.702 16 C 0.263 3.737 17 H 0.050 0.950 18 C -0.147 4.147 19 C -0.533 4.533 20 H 0.061 0.939 21 C 0.066 3.934 22 N -0.883 5.883 23 Si 0.902 3.098 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.068 4.068 28 C -0.128 4.128 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.175 0.825 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.411 0.589 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.388 0.612 40 H 0.015 0.985 41 H 0.090 0.910 42 H 0.026 0.974 43 H 0.264 0.736 44 H 0.132 0.868 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.760 -25.126 -1.543 29.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.143 4.143 3 C -0.208 4.208 4 C -0.034 4.034 5 C -0.251 4.251 6 C 0.340 3.660 7 O -0.394 6.394 8 N -0.311 5.311 9 C 0.063 3.937 10 C -0.176 4.176 11 C -0.065 4.065 12 C -0.139 4.139 13 C 0.328 3.672 14 O -0.434 6.434 15 N -0.349 5.349 16 C 0.162 3.838 17 H 0.068 0.932 18 C -0.205 4.205 19 C -0.572 4.572 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.521 5.521 23 Si 0.729 3.271 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.088 4.088 28 C -0.148 4.148 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.191 0.809 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.247 0.753 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.222 0.778 40 H 0.034 0.966 41 H 0.109 0.891 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.150 0.850 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.107 -24.245 -1.944 28.118 hybrid contribution -0.417 -0.667 0.417 0.891 sum 13.690 -24.912 -1.527 28.467 Atomic orbital electron populations 1.20906 0.92613 1.02361 1.02795 1.23787 0.96670 0.97424 0.96428 1.23483 0.93652 1.01933 1.01704 1.22671 0.94533 0.97044 0.89164 1.22777 1.00364 0.91700 1.10289 1.18590 0.87490 0.84212 0.75720 1.90550 1.13708 1.86243 1.48896 1.43343 1.10614 1.04301 1.72880 1.17813 0.94382 0.85162 0.96386 1.20809 1.02429 0.92571 1.01769 1.21069 0.92721 0.97214 0.95493 1.20331 0.97497 0.94683 1.01355 1.18159 0.81638 0.87322 0.80046 1.90723 1.67755 1.38206 1.46744 1.46496 1.24273 1.15624 1.48550 1.18780 0.89451 0.79103 0.96482 0.93215 1.22078 0.97460 1.03058 0.97932 1.21217 0.92381 0.93385 1.50193 0.92057 1.24888 0.99115 0.94902 0.94822 1.69904 1.35107 0.98325 1.48749 0.86441 0.84162 0.78050 0.78413 1.20556 1.21078 1.19820 1.21278 0.98937 0.91450 0.97098 1.20998 0.95709 0.98409 0.99653 0.90995 0.91012 0.92008 0.87769 0.80877 0.85583 0.84947 0.75287 0.85377 0.84294 0.77838 0.96576 0.89112 0.95442 0.92589 0.85018 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 10.19 36.01 0.37 -0.54 16 2 C -0.12 -0.93 9.98 -36.00 -0.36 -1.29 16 3 C -0.19 -1.72 8.81 -38.02 -0.33 -2.06 16 4 C -0.01 -0.10 9.89 -37.41 -0.37 -0.47 16 5 C -0.23 -1.56 10.07 -37.46 -0.38 -1.94 16 6 C 0.55 5.44 7.42 -13.06 -0.10 5.34 16 7 O -0.52 -6.80 10.65 5.17 0.06 -6.75 16 8 N -0.67 -5.82 5.31 -11.18 -0.06 -5.88 16 9 C 0.16 1.85 6.26 -83.78 -0.52 1.33 16 10 C -0.16 -1.80 9.94 -39.45 -0.39 -2.20 16 11 C -0.05 -0.67 9.58 -39.23 -0.38 -1.04 16 12 C -0.13 -2.28 5.88 -104.95 -0.62 -2.90 16 13 C 0.54 11.60 7.73 -12.45 -0.10 11.50 16 14 O -0.55 -13.79 16.00 5.29 0.08 -13.70 16 15 N -0.70 -15.37 5.02 -55.96 -0.28 -15.65 16 16 C 0.26 6.90 2.56 -69.08 -0.18 6.72 16 17 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 18 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 19 C -0.53 -14.42 8.73 -34.44 -0.30 -14.72 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 21 C 0.07 1.80 5.31 -17.82 -0.09 1.71 16 22 N -0.88 -25.20 11.33 55.43 0.63 -24.57 16 23 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 C -0.07 -1.00 9.53 -39.23 -0.37 -1.38 16 28 C -0.13 -1.71 8.62 -39.45 -0.34 -2.05 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.58 8.05 -52.49 -0.42 0.15 16 33 H 0.17 2.04 4.58 -55.12 -0.25 1.78 16 34 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 35 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 36 H 0.41 2.08 8.79 -40.82 -0.36 1.72 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.14 2.04 7.64 -52.49 -0.40 1.64 16 39 H 0.39 7.40 6.56 -40.82 -0.27 7.13 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 2.49 6.08 -51.93 -0.32 2.17 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.13 1.78 6.39 -52.49 -0.34 1.44 16 45 H 0.14 1.81 6.44 -52.49 -0.34 1.47 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -33.67 381.96 -8.96 -42.63 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.01 Total: 9.59 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -4.12 Total: -7.36 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.29 Total: -46.09 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.14 Total: -20.45 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.67 -8.96 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493200121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.748 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds