Wall clock time and date at job start Tue Mar 31 2020 15:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33411 * 119.99869 * 2 1 4 4 C 1.46333 * 119.99737 * 180.02562 * 3 2 1 5 5 C 1.35212 * 119.99778 * 185.27663 * 4 3 2 6 6 C 1.46204 * 120.00157 * 353.18724 * 5 4 3 7 7 O 1.21724 * 120.00138 * 5.83424 * 6 5 4 8 8 N 1.34782 * 120.00127 * 185.83657 * 6 5 4 9 9 C 1.39300 * 120.00043 * 185.14021 * 8 6 5 10 10 C 1.39169 * 119.92799 * 214.01537 * 9 8 6 11 11 C 1.37652 * 120.07277 * 179.97438 * 10 9 8 12 12 C 1.39765 * 119.92486 * 359.97255 * 11 10 9 13 13 C 1.47582 * 120.06502 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00510 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99814 * 180.02562 * 13 12 11 16 16 C 1.46504 * 120.00342 * 179.97438 * 15 13 12 17 17 H 1.08993 * 109.46678 * 34.99407 * 16 15 13 18 18 C 1.53005 * 109.47013 * 274.99679 * 16 15 13 19 19 C 1.50692 * 109.47394 * 154.99703 * 16 15 13 20 20 H 1.08002 * 120.00371 * 0.02562 * 19 16 15 21 21 C 1.37884 * 120.00168 * 180.27191 * 19 16 15 22 22 N 1.31509 * 119.99549 * 359.73125 * 21 19 16 23 23 Si 1.86794 * 120.00043 * 179.72139 * 21 19 16 24 24 H 1.48505 * 109.47014 * 90.00754 * 23 21 19 25 25 H 1.48501 * 109.47370 * 210.00336 * 23 21 19 26 26 H 1.48500 * 109.47729 * 330.00868 * 23 21 19 27 27 C 1.39752 * 119.86170 * 0.25381 * 12 11 10 28 28 C 1.37657 * 119.92784 * 359.51600 * 27 12 11 29 29 H 1.08999 * 109.47520 * 300.00116 * 1 2 3 30 30 H 1.09004 * 109.46898 * 60.00425 * 1 2 3 31 31 H 1.09002 * 109.47391 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.99809 * 180.02562 * 2 1 3 33 33 H 1.07999 * 120.00300 * 359.97438 * 3 2 1 34 34 H 1.07995 * 120.00224 * 5.27121 * 4 3 2 35 35 H 1.08002 * 120.00055 * 173.18908 * 5 4 3 36 36 H 0.96999 * 119.99651 * 5.13079 * 8 6 5 37 37 H 1.08000 * 119.96655 * 359.97075 * 10 9 8 38 38 H 1.08000 * 120.03860 * 179.97438 * 11 10 9 39 39 H 0.97006 * 119.99865 * 359.97438 * 15 13 12 40 40 H 1.09006 * 109.46812 * 59.99365 * 18 16 15 41 41 H 1.08999 * 109.46952 * 179.97438 * 18 16 15 42 42 H 1.08998 * 109.46775 * 300.00025 * 18 16 15 43 43 H 0.97000 * 119.99817 * 179.97438 * 22 21 19 44 44 H 1.07998 * 120.03820 * 179.72311 * 27 12 11 45 45 H 1.07996 * 119.96202 * 180.23367 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1740 1.1554 0.0000 4 6 3.6374 1.1554 -0.0006 5 6 4.3134 2.3213 0.1071 6 6 3.5902 3.5915 0.0742 7 8 2.3731 3.5986 0.0569 8 7 4.2710 4.7547 0.0629 9 6 3.5846 5.9644 0.1396 10 6 4.0673 7.0807 -0.5367 11 6 3.3910 8.2775 -0.4634 12 6 2.2181 8.3704 0.2909 13 6 1.4909 9.6520 0.3722 14 8 1.9122 10.6286 -0.2170 15 7 0.3602 9.7403 1.1003 16 6 -0.3614 11.0126 1.1815 17 1 -0.2812 11.5371 0.2295 18 6 0.2460 11.8736 2.2910 19 6 -1.8128 10.7483 1.4886 20 1 -2.1628 9.7339 1.6115 21 6 -2.6952 11.8011 1.6077 22 7 -2.2691 13.0362 1.4585 23 14 -4.4959 11.4729 1.9807 24 1 -4.7021 11.4581 3.4513 25 1 -5.3298 12.5419 1.3748 26 1 -4.8875 10.1578 1.4128 27 6 1.7386 7.2487 0.9728 28 6 2.4169 6.0536 0.8915 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 2.0470 -0.9353 -0.0004 33 1 1.6341 2.0907 -0.0004 34 1 4.1773 0.2241 -0.0869 35 1 5.3878 2.3144 0.2175 36 1 5.2391 4.7494 0.0014 37 1 4.9735 7.0082 -1.1197 38 1 3.7664 9.1436 -0.9881 39 1 0.0243 8.9612 1.5707 40 1 1.2959 12.0648 2.0688 41 1 -0.2907 12.8204 2.3511 42 1 0.1658 11.3490 3.2430 43 1 -2.8899 13.7768 1.5419 44 1 0.8349 7.3185 1.5601 45 1 2.0448 5.1855 1.4151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493200121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:31 Heat of formation + Delta-G solvation = -26.499864 kcal Electronic energy + Delta-G solvation = -26171.892339 eV Core-core repulsion = 22347.482926 eV Total energy + Delta-G solvation = -3824.409413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.76286 -40.81631 -39.18392 -36.80875 -36.58538 -35.70893 -34.39603 -33.31005 -32.16602 -31.51613 -30.13882 -28.07037 -27.36065 -25.47507 -23.95607 -23.59593 -22.43249 -21.20267 -20.90815 -20.85030 -19.53319 -18.55874 -18.04477 -17.75113 -17.22283 -16.57421 -16.11703 -15.92200 -15.81212 -15.59901 -15.46597 -15.12239 -14.77567 -14.49994 -14.34342 -14.21650 -14.09109 -13.87470 -13.71778 -13.57744 -13.44774 -13.01935 -12.87795 -12.73623 -12.50009 -12.36013 -12.30522 -12.24454 -12.15543 -11.68003 -11.38007 -11.12619 -10.88996 -10.61447 -10.39699 -10.00875 -9.84867 -9.37252 -9.04429 -8.19069 -6.36792 -0.39901 -0.00382 0.37155 1.43737 1.44902 1.55638 1.58541 1.94591 2.06070 2.33379 2.46039 2.58614 2.90945 3.11218 3.70082 3.85088 3.90486 3.93781 3.99579 4.26637 4.29511 4.42059 4.46867 4.53421 4.61759 4.72144 4.77826 4.79263 4.90635 4.96956 4.99258 5.06036 5.10013 5.19382 5.21983 5.35490 5.36338 5.44373 5.51241 5.57600 5.66279 5.82528 5.88739 5.91661 6.02600 6.07149 6.44523 6.69650 6.90307 7.18931 7.29018 7.47404 8.87541 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.002421 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.874771 B =11562.819494 C =13529.968976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.115 4.115 3 C -0.220 4.220 4 C -0.013 4.013 5 C -0.232 4.232 6 C 0.538 3.462 7 O -0.553 6.553 8 N -0.654 5.654 9 C 0.173 3.827 10 C -0.141 4.141 11 C -0.050 4.050 12 C -0.163 4.163 13 C 0.541 3.459 14 O -0.599 6.599 15 N -0.700 5.700 16 C 0.269 3.731 17 H 0.000 1.000 18 C -0.133 4.133 19 C -0.549 4.549 20 H 0.071 0.929 21 C 0.015 3.985 22 N -0.916 5.916 23 Si 0.974 3.026 24 H -0.269 1.269 25 H -0.284 1.284 26 H -0.266 1.266 27 C -0.066 4.066 28 C -0.136 4.136 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.162 0.838 35 H 0.172 0.828 36 H 0.432 0.568 37 H 0.169 0.831 38 H 0.134 0.866 39 H 0.402 0.598 40 H 0.012 0.988 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.266 0.734 44 H 0.136 0.864 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.185 -28.895 -1.244 33.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.237 4.237 4 C -0.032 4.032 5 C -0.252 4.252 6 C 0.332 3.668 7 O -0.434 6.434 8 N -0.300 5.300 9 C 0.077 3.923 10 C -0.161 4.161 11 C -0.070 4.070 12 C -0.167 4.167 13 C 0.329 3.671 14 O -0.482 6.482 15 N -0.349 5.349 16 C 0.166 3.834 17 H 0.018 0.982 18 C -0.192 4.192 19 C -0.587 4.587 20 H 0.089 0.911 21 C -0.186 4.186 22 N -0.554 5.554 23 Si 0.799 3.201 24 H -0.195 1.195 25 H -0.210 1.210 26 H -0.190 1.190 27 C -0.085 4.085 28 C -0.156 4.156 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.148 0.852 33 H 0.160 0.840 34 H 0.179 0.821 35 H 0.190 0.810 36 H 0.272 0.728 37 H 0.187 0.813 38 H 0.152 0.848 39 H 0.238 0.762 40 H 0.032 0.968 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.154 0.846 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.579 -28.065 -1.632 32.140 hybrid contribution -0.815 0.365 0.275 0.934 sum 14.763 -27.700 -1.357 31.418 Atomic orbital electron populations 1.20972 0.92880 1.03306 1.02061 1.24027 0.96746 0.98006 0.94504 1.23428 0.95354 1.01217 1.03706 1.22971 0.93381 0.98637 0.88194 1.22968 1.01981 0.89719 1.10526 1.19306 0.87287 0.85372 0.74793 1.90586 1.15588 1.86827 1.50420 1.43317 1.11639 1.02929 1.72086 1.17938 0.93524 0.86393 0.94486 1.21071 1.03082 0.90872 1.01109 1.21157 0.92250 0.98450 0.95097 1.19973 0.98954 0.92970 1.04834 1.18838 0.81073 0.88561 0.78584 1.90682 1.68826 1.40289 1.48443 1.46255 1.24538 1.14785 1.49288 1.18411 0.90286 0.80621 0.94106 0.98204 1.21896 0.96776 1.02103 0.98380 1.21517 0.92829 0.94022 1.50350 0.91055 1.25816 1.03790 0.94558 0.94398 1.70050 1.36732 0.99285 1.49347 0.85310 0.78240 0.77999 0.78577 1.19456 1.21012 1.19001 1.21278 0.99205 0.91270 0.96760 1.21061 0.96529 0.97692 1.00315 0.91748 0.91805 0.90198 0.85153 0.83963 0.82069 0.81050 0.72788 0.81337 0.84839 0.76166 0.96841 0.91207 0.94045 0.92439 0.84589 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 10.19 71.24 0.73 -1.04 16 2 C -0.11 -1.49 9.98 24.59 0.25 -1.24 16 3 C -0.22 -3.70 8.81 23.28 0.21 -3.49 16 4 C -0.01 -0.13 9.89 23.68 0.23 0.10 16 5 C -0.23 -2.33 10.07 23.64 0.24 -2.10 16 6 C 0.54 9.52 7.42 86.31 0.64 10.16 16 7 O -0.55 -14.33 10.65 -4.43 -0.05 -14.38 16 8 N -0.65 -9.39 5.31 -307.48 -1.63 -11.02 16 9 C 0.17 3.70 6.26 38.40 0.24 3.94 16 10 C -0.14 -2.93 9.94 22.35 0.22 -2.71 16 11 C -0.05 -1.45 9.58 22.50 0.22 -1.23 16 12 C -0.16 -5.65 5.88 -20.08 -0.12 -5.76 16 13 C 0.54 24.23 7.73 86.71 0.67 24.90 16 14 O -0.60 -31.60 16.00 -4.00 -0.06 -31.66 16 15 N -0.70 -31.93 5.02 -449.23 -2.25 -34.18 16 16 C 0.27 14.73 2.56 44.24 0.11 14.85 16 17 H 0.00 0.00 7.58 -2.39 -0.02 -0.01 16 18 C -0.13 -7.03 9.26 71.98 0.67 -6.36 16 19 C -0.55 -30.27 8.73 25.60 0.22 -30.05 16 20 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 21 C 0.01 0.80 5.31 84.66 0.45 1.25 16 22 N -0.92 -53.70 11.33 21.45 0.24 -53.46 16 23 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 C -0.07 -1.94 9.53 22.50 0.21 -1.73 16 28 C -0.14 -3.53 8.62 22.36 0.19 -3.34 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.13 0.99 8.05 -2.91 -0.02 0.96 16 33 H 0.14 3.41 4.58 -44.55 -0.20 3.21 16 34 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16 35 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 36 H 0.43 2.53 8.79 -92.71 -0.82 1.72 16 37 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.13 3.98 7.64 -2.91 -0.02 3.96 16 39 H 0.40 15.76 6.56 -92.70 -0.61 15.15 16 40 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.07 3.99 6.08 -2.39 -0.01 3.97 16 42 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.14 3.74 6.39 -2.91 -0.02 3.72 16 45 H 0.14 3.58 6.44 -2.91 -0.02 3.56 16 Total: -1.00 -77.70 381.96 3.07 -74.63 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: -0.58 Total: 28.77 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 5.38 Total: -3.86 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -3.64 Total: -98.66 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -0.11 Total: -46.04 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -77.70 3.07 -74.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493200121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.130 kcal (2) G-P(sol) polarization free energy of solvation -77.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds