Wall clock time and date at job start Tue Mar 31 2020 15:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33425 * 119.99679 * 2 1 4 4 C 1.46330 * 119.99663 * 179.97438 * 3 2 1 5 5 C 1.35214 * 119.99973 * 185.54742 * 4 3 2 6 6 C 1.46202 * 119.99761 * 354.55422 * 5 4 3 7 7 O 1.21721 * 120.00356 * 5.70690 * 6 5 4 8 8 N 1.34772 * 120.00011 * 185.69937 * 6 5 4 9 9 C 1.39308 * 120.00411 * 184.39404 * 8 6 5 10 10 C 1.39170 * 119.92680 * 324.77804 * 9 8 6 11 11 C 1.37654 * 120.06848 * 180.25087 * 10 9 8 12 12 C 1.39767 * 119.92760 * 359.49507 * 11 10 9 13 13 C 1.47572 * 120.07020 * 180.25758 * 12 11 10 14 14 O 1.21588 * 120.00040 * 180.22730 * 13 12 11 15 15 N 1.34775 * 120.00118 * 0.22061 * 13 12 11 16 16 C 1.46506 * 120.00187 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.47109 * 325.00400 * 16 15 13 18 18 C 1.53002 * 109.46924 * 85.00174 * 16 15 13 19 19 C 1.50702 * 109.47122 * 205.00281 * 16 15 13 20 20 H 1.07996 * 119.99909 * 359.97438 * 19 16 15 21 21 C 1.37879 * 119.99820 * 180.02562 * 19 16 15 22 22 N 1.31518 * 119.99659 * 359.97438 * 21 19 16 23 23 Si 1.86796 * 119.99841 * 180.02562 * 21 19 16 24 24 H 1.48496 * 109.47176 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47258 * 119.99854 * 23 21 19 26 26 H 1.48503 * 109.46882 * 239.99816 * 23 21 19 27 27 C 1.39762 * 119.85672 * 0.47996 * 12 11 10 28 28 C 1.37654 * 119.93149 * 359.77199 * 27 12 11 29 29 H 1.08997 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47028 * 299.99942 * 1 2 3 31 31 H 1.08998 * 109.47251 * 59.99692 * 1 2 3 32 32 H 1.07993 * 120.00287 * 179.97438 * 2 1 3 33 33 H 1.07997 * 120.00141 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.99742 * 5.54958 * 4 3 2 35 35 H 1.07995 * 119.99995 * 174.55651 * 5 4 3 36 36 H 0.97000 * 120.00212 * 4.39861 * 8 6 5 37 37 H 1.07999 * 119.96667 * 359.97438 * 10 9 8 38 38 H 1.07995 * 120.03359 * 179.74430 * 11 10 9 39 39 H 0.97004 * 119.99955 * 0.02562 * 15 13 12 40 40 H 1.09002 * 109.47043 * 60.00186 * 18 16 15 41 41 H 1.08997 * 109.46880 * 180.02562 * 18 16 15 42 42 H 1.08998 * 109.47169 * 300.00334 * 18 16 15 43 43 H 0.97004 * 119.99477 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.03358 * 179.75315 * 27 12 11 45 45 H 1.07999 * 119.96388 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1741 1.1555 0.0000 4 6 3.6374 1.1555 0.0006 5 6 4.3134 2.3211 0.1138 6 6 3.5873 3.5900 0.1157 7 8 2.3701 3.5948 0.1203 8 7 4.2657 4.7546 0.1126 9 6 3.5773 5.9620 0.2069 10 6 2.3318 6.1002 -0.3984 11 6 1.6513 7.2937 -0.3115 12 6 2.2078 8.3638 0.3946 13 6 1.4785 9.6428 0.4946 14 8 1.9657 10.5743 1.1056 15 7 0.2725 9.7785 -0.0915 16 6 -0.4513 11.0484 0.0073 17 1 -0.2622 11.4996 0.9814 18 6 0.0275 11.9954 -1.0949 19 6 -1.9288 10.7982 -0.1522 20 1 -2.2923 9.7938 -0.3116 21 6 -2.8165 11.8518 -0.0956 22 7 -2.3737 13.0749 0.0981 23 14 -4.6479 11.5416 -0.2925 24 1 -4.8850 10.0900 -0.4969 25 1 -5.3607 11.9927 0.9297 26 1 -5.1541 12.2956 -1.4675 27 6 3.4586 8.2215 1.0017 28 6 4.1363 7.0271 0.9067 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.0471 -0.9352 0.0004 33 1 1.6341 2.0908 0.0004 34 1 4.1774 0.2246 -0.0895 35 1 5.3897 2.3146 0.2027 36 1 5.2333 4.7521 0.0447 37 1 1.9006 5.2717 -0.9407 38 1 0.6867 7.4016 -0.7849 39 1 -0.1163 9.0353 -0.5788 40 1 -0.1616 11.5442 -2.0690 41 1 -0.5107 12.9404 -1.0211 42 1 1.0962 12.1763 -0.9796 43 1 -2.9982 13.8161 0.1383 44 1 3.8931 9.0479 1.5446 45 1 5.1031 6.9167 1.3753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493200124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:39 Heat of formation + Delta-G solvation = -4.267918 kcal Electronic energy + Delta-G solvation = -26176.516502 eV Core-core repulsion = 22353.071138 eV Total energy + Delta-G solvation = -3823.445364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86905 -39.40097 -37.92033 -35.96271 -34.89656 -34.70625 -32.75561 -32.43340 -30.94179 -30.18523 -28.53618 -27.38039 -25.23359 -24.40977 -22.85695 -22.42593 -20.92904 -20.34016 -20.13675 -19.44861 -18.02515 -17.45562 -17.33935 -15.90703 -15.70015 -15.31087 -15.10502 -14.75827 -14.64145 -14.32216 -14.16844 -13.91310 -13.69287 -13.57668 -13.31759 -13.21055 -12.97312 -12.64687 -12.38832 -12.31137 -11.91544 -11.77631 -11.65832 -11.22894 -11.10292 -11.06194 -10.93363 -10.71522 -10.38675 -10.25635 -10.20889 -9.61396 -9.08982 -9.00040 -8.93398 -8.73107 -8.52876 -8.20246 -7.83282 -6.09675 -4.18602 0.31430 1.00806 1.45716 2.29538 2.78983 3.01518 3.26191 3.33850 3.36924 3.39652 4.11252 4.22623 4.34766 4.41290 4.45411 4.78612 4.84287 4.91296 5.00879 5.09927 5.22719 5.26578 5.32337 5.35728 5.42682 5.44548 5.50871 5.58608 5.74921 5.96100 6.05268 6.19603 6.23685 6.37218 6.47337 6.53814 6.63349 6.86339 6.96587 7.00796 7.11613 7.18389 7.48421 7.60003 7.72982 7.89219 7.95004 8.17743 8.69191 8.81069 9.14194 9.48794 10.96421 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.002426 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.495337 B =11538.886936 C =13531.515184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.125 4.125 3 C -0.191 4.191 4 C -0.015 4.015 5 C -0.230 4.230 6 C 0.548 3.452 7 O -0.516 6.516 8 N -0.667 5.667 9 C 0.154 3.846 10 C -0.128 4.128 11 C -0.070 4.070 12 C -0.134 4.134 13 C 0.542 3.458 14 O -0.554 6.554 15 N -0.702 5.702 16 C 0.263 3.737 17 H 0.050 0.950 18 C -0.147 4.147 19 C -0.532 4.532 20 H 0.062 0.938 21 C 0.065 3.935 22 N -0.883 5.883 23 Si 0.902 3.098 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.047 4.047 28 C -0.154 4.154 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.175 0.825 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.411 0.589 37 H 0.142 0.858 38 H 0.132 0.868 39 H 0.388 0.612 40 H 0.026 0.974 41 H 0.091 0.909 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.139 0.861 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.792 -25.124 -1.922 29.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.143 4.143 3 C -0.208 4.208 4 C -0.034 4.034 5 C -0.251 4.251 6 C 0.340 3.660 7 O -0.395 6.395 8 N -0.310 5.310 9 C 0.059 3.941 10 C -0.148 4.148 11 C -0.089 4.089 12 C -0.138 4.138 13 C 0.328 3.672 14 O -0.434 6.434 15 N -0.349 5.349 16 C 0.161 3.839 17 H 0.068 0.932 18 C -0.205 4.205 19 C -0.571 4.571 20 H 0.080 0.920 21 C -0.138 4.138 22 N -0.521 5.521 23 Si 0.729 3.271 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.066 4.066 28 C -0.175 4.175 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.191 0.809 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.247 0.753 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.222 0.778 40 H 0.046 0.954 41 H 0.109 0.891 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.157 0.843 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.188 -24.279 -1.462 28.159 hybrid contribution -0.455 -0.613 -0.358 0.844 sum 13.733 -24.892 -1.821 28.488 Atomic orbital electron populations 1.20905 0.92612 1.02359 1.02792 1.23790 0.96670 0.97422 0.96455 1.23488 0.93646 1.01931 1.01693 1.22670 0.94543 0.97017 0.89196 1.22771 1.00288 0.91723 1.10293 1.18584 0.87500 0.84203 0.75702 1.90529 1.13722 1.86171 1.49080 1.43305 1.10751 1.04351 1.72643 1.17840 0.93821 0.85377 0.97037 1.21160 0.94779 0.98174 1.00661 1.21311 0.99397 0.91740 0.96496 1.20343 0.96490 0.95131 1.01827 1.18162 0.82138 0.86873 0.80009 1.90723 1.68037 1.41213 1.43463 1.46497 1.18080 1.17780 1.52582 1.18788 0.89747 0.78808 0.96516 0.93216 1.22077 0.97502 1.03075 0.97892 1.21256 0.90471 0.94136 1.51218 0.91999 1.24893 0.99261 0.94914 0.94694 1.69920 1.34637 0.98910 1.48627 0.86387 0.84565 0.78371 0.77745 1.19699 1.20881 1.20892 1.21063 0.92820 0.96768 0.95978 1.20816 1.01716 0.93330 1.01614 0.92014 0.91003 0.91007 0.87776 0.80864 0.85584 0.84962 0.75287 0.84041 0.85036 0.77828 0.95442 0.89089 0.96576 0.92649 0.84310 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 10.19 36.01 0.37 -0.53 16 2 C -0.13 -0.93 9.99 -35.99 -0.36 -1.29 16 3 C -0.19 -1.72 8.80 -38.01 -0.33 -2.05 16 4 C -0.01 -0.10 9.89 -37.41 -0.37 -0.47 16 5 C -0.23 -1.56 10.07 -37.46 -0.38 -1.93 16 6 C 0.55 5.42 7.53 -13.07 -0.10 5.32 16 7 O -0.52 -6.75 10.37 5.17 0.05 -6.69 16 8 N -0.67 -5.80 5.30 -11.18 -0.06 -5.85 16 9 C 0.15 1.81 6.29 -83.77 -0.53 1.29 16 10 C -0.13 -1.72 8.66 -39.45 -0.34 -2.06 16 11 C -0.07 -1.03 9.53 -39.22 -0.37 -1.41 16 12 C -0.13 -2.27 5.88 -104.95 -0.62 -2.89 16 13 C 0.54 11.60 7.73 -12.45 -0.10 11.51 16 14 O -0.55 -13.80 16.00 5.29 0.08 -13.71 16 15 N -0.70 -15.38 5.02 -55.96 -0.28 -15.66 16 16 C 0.26 6.89 2.56 -69.08 -0.18 6.71 16 17 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 18 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 19 C -0.53 -14.39 8.73 -34.44 -0.30 -14.69 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 21 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 22 N -0.88 -25.20 11.32 55.43 0.63 -24.57 16 23 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C -0.05 -0.69 9.58 -39.23 -0.38 -1.06 16 28 C -0.15 -1.79 9.95 -39.45 -0.39 -2.18 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.57 8.05 -52.49 -0.42 0.15 16 33 H 0.18 2.02 4.58 -55.16 -0.25 1.77 16 34 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 35 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 36 H 0.41 2.07 8.80 -40.82 -0.36 1.72 16 37 H 0.14 1.89 6.22 -52.49 -0.33 1.57 16 38 H 0.13 1.79 6.39 -52.49 -0.34 1.45 16 39 H 0.39 7.41 6.56 -40.82 -0.27 7.15 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.14 2.04 7.64 -52.49 -0.40 1.64 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -33.63 381.61 -8.97 -42.59 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.00 Total: 9.66 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -4.12 Total: -7.44 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.29 Total: -46.09 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: 0.14 Total: -20.41 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.63 -8.97 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493200124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.326 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds