Wall clock time and date at job start Tue Mar 31 2020 15:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33425 * 119.99679 * 2 1 4 4 C 1.46330 * 119.99663 * 179.97438 * 3 2 1 5 5 C 1.35214 * 119.99973 * 185.54742 * 4 3 2 6 6 C 1.46202 * 119.99761 * 354.55422 * 5 4 3 7 7 O 1.21721 * 120.00356 * 5.70690 * 6 5 4 8 8 N 1.34772 * 120.00011 * 185.69937 * 6 5 4 9 9 C 1.39308 * 120.00411 * 184.39404 * 8 6 5 10 10 C 1.39170 * 119.92680 * 324.77804 * 9 8 6 11 11 C 1.37654 * 120.06848 * 180.25087 * 10 9 8 12 12 C 1.39767 * 119.92760 * 359.49507 * 11 10 9 13 13 C 1.47572 * 120.07020 * 180.25758 * 12 11 10 14 14 O 1.21588 * 120.00040 * 180.22730 * 13 12 11 15 15 N 1.34775 * 120.00118 * 0.22061 * 13 12 11 16 16 C 1.46506 * 120.00187 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.47109 * 325.00400 * 16 15 13 18 18 C 1.53002 * 109.46924 * 85.00174 * 16 15 13 19 19 C 1.50702 * 109.47122 * 205.00281 * 16 15 13 20 20 H 1.07996 * 119.99909 * 359.97438 * 19 16 15 21 21 C 1.37879 * 119.99820 * 180.02562 * 19 16 15 22 22 N 1.31518 * 119.99659 * 359.97438 * 21 19 16 23 23 Si 1.86796 * 119.99841 * 180.02562 * 21 19 16 24 24 H 1.48496 * 109.47176 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47258 * 119.99854 * 23 21 19 26 26 H 1.48503 * 109.46882 * 239.99816 * 23 21 19 27 27 C 1.39762 * 119.85672 * 0.47996 * 12 11 10 28 28 C 1.37654 * 119.93149 * 359.77199 * 27 12 11 29 29 H 1.08997 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47028 * 299.99942 * 1 2 3 31 31 H 1.08998 * 109.47251 * 59.99692 * 1 2 3 32 32 H 1.07993 * 120.00287 * 179.97438 * 2 1 3 33 33 H 1.07997 * 120.00141 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.99742 * 5.54958 * 4 3 2 35 35 H 1.07995 * 119.99995 * 174.55651 * 5 4 3 36 36 H 0.97000 * 120.00212 * 4.39861 * 8 6 5 37 37 H 1.07999 * 119.96667 * 359.97438 * 10 9 8 38 38 H 1.07995 * 120.03359 * 179.74430 * 11 10 9 39 39 H 0.97004 * 119.99955 * 0.02562 * 15 13 12 40 40 H 1.09002 * 109.47043 * 60.00186 * 18 16 15 41 41 H 1.08997 * 109.46880 * 180.02562 * 18 16 15 42 42 H 1.08998 * 109.47169 * 300.00334 * 18 16 15 43 43 H 0.97004 * 119.99477 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.03358 * 179.75315 * 27 12 11 45 45 H 1.07999 * 119.96388 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1741 1.1555 0.0000 4 6 3.6374 1.1555 0.0006 5 6 4.3134 2.3211 0.1138 6 6 3.5873 3.5900 0.1157 7 8 2.3701 3.5948 0.1203 8 7 4.2657 4.7546 0.1126 9 6 3.5773 5.9620 0.2069 10 6 2.3318 6.1002 -0.3984 11 6 1.6513 7.2937 -0.3115 12 6 2.2078 8.3638 0.3946 13 6 1.4785 9.6428 0.4946 14 8 1.9657 10.5743 1.1056 15 7 0.2725 9.7785 -0.0915 16 6 -0.4513 11.0484 0.0073 17 1 -0.2622 11.4996 0.9814 18 6 0.0275 11.9954 -1.0949 19 6 -1.9288 10.7982 -0.1522 20 1 -2.2923 9.7938 -0.3116 21 6 -2.8165 11.8518 -0.0956 22 7 -2.3737 13.0749 0.0981 23 14 -4.6479 11.5416 -0.2925 24 1 -4.8850 10.0900 -0.4969 25 1 -5.3607 11.9927 0.9297 26 1 -5.1541 12.2956 -1.4675 27 6 3.4586 8.2215 1.0017 28 6 4.1363 7.0271 0.9067 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.0471 -0.9352 0.0004 33 1 1.6341 2.0908 0.0004 34 1 4.1774 0.2246 -0.0895 35 1 5.3897 2.3146 0.2027 36 1 5.2333 4.7521 0.0447 37 1 1.9006 5.2717 -0.9407 38 1 0.6867 7.4016 -0.7849 39 1 -0.1163 9.0353 -0.5788 40 1 -0.1616 11.5442 -2.0690 41 1 -0.5107 12.9404 -1.0211 42 1 1.0962 12.1763 -0.9796 43 1 -2.9982 13.8161 0.1383 44 1 3.8931 9.0479 1.5446 45 1 5.1031 6.9167 1.3753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493200124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:38 Heat of formation + Delta-G solvation = -25.827437 kcal Electronic energy + Delta-G solvation = -26177.451393 eV Core-core repulsion = 22353.071138 eV Total energy + Delta-G solvation = -3824.380255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.76484 -40.81680 -39.17683 -36.80958 -36.58308 -35.70654 -34.39628 -33.31376 -32.15618 -31.51169 -30.13798 -28.06521 -27.36426 -25.46889 -23.93272 -23.59938 -22.44824 -21.20568 -20.91270 -20.84541 -19.52698 -18.54809 -18.04646 -17.76282 -17.22867 -16.56241 -16.13919 -15.90528 -15.82200 -15.60397 -15.37267 -15.18323 -14.82561 -14.51669 -14.34182 -14.17186 -14.08483 -13.86868 -13.71944 -13.56682 -13.43580 -13.00664 -12.89328 -12.75407 -12.50214 -12.36209 -12.30024 -12.23150 -12.13536 -11.67101 -11.36470 -11.12036 -10.89399 -10.62078 -10.36053 -9.99218 -9.85218 -9.37896 -9.05501 -8.19344 -6.36966 -0.37630 -0.01964 0.37869 1.43355 1.44023 1.56663 1.59399 1.91524 2.09311 2.33347 2.45806 2.58532 2.90525 3.11019 3.71006 3.86015 3.90611 3.95344 3.99606 4.27027 4.30137 4.42755 4.47609 4.53451 4.62395 4.72006 4.78034 4.79626 4.90522 4.97637 4.99512 5.06236 5.11583 5.21057 5.22309 5.35589 5.37088 5.44411 5.51465 5.57676 5.66229 5.83441 5.88662 5.91975 6.02988 6.07116 6.44828 6.69737 6.90177 7.19232 7.28894 7.47268 8.87450 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.002426 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.495337 B =11538.886936 C =13531.515184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.115 4.115 3 C -0.220 4.220 4 C -0.013 4.013 5 C -0.231 4.231 6 C 0.538 3.462 7 O -0.553 6.553 8 N -0.653 5.653 9 C 0.170 3.830 10 C -0.136 4.136 11 C -0.068 4.068 12 C -0.163 4.163 13 C 0.540 3.460 14 O -0.599 6.599 15 N -0.700 5.700 16 C 0.269 3.731 17 H 0.000 1.000 18 C -0.133 4.133 19 C -0.548 4.548 20 H 0.071 0.929 21 C 0.014 3.986 22 N -0.916 5.916 23 Si 0.975 3.025 24 H -0.261 1.261 25 H -0.282 1.282 26 H -0.276 1.276 27 C -0.051 4.051 28 C -0.140 4.140 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.144 0.856 34 H 0.162 0.838 35 H 0.172 0.828 36 H 0.432 0.568 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.402 0.598 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.012 0.988 43 H 0.266 0.734 44 H 0.134 0.866 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.199 -28.842 -2.469 33.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.237 4.237 4 C -0.032 4.032 5 C -0.251 4.251 6 C 0.332 3.668 7 O -0.434 6.434 8 N -0.299 5.299 9 C 0.074 3.926 10 C -0.157 4.157 11 C -0.087 4.087 12 C -0.166 4.166 13 C 0.329 3.671 14 O -0.482 6.482 15 N -0.349 5.349 16 C 0.165 3.835 17 H 0.018 0.982 18 C -0.192 4.192 19 C -0.586 4.586 20 H 0.089 0.911 21 C -0.186 4.186 22 N -0.554 5.554 23 Si 0.799 3.201 24 H -0.185 1.185 25 H -0.208 1.208 26 H -0.202 1.202 27 C -0.071 4.071 28 C -0.160 4.160 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.161 0.839 34 H 0.179 0.821 35 H 0.189 0.811 36 H 0.272 0.728 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.238 0.762 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.032 0.968 43 H 0.076 0.924 44 H 0.152 0.848 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 15.640 -28.048 -2.030 32.178 hybrid contribution -0.844 0.401 -0.167 0.949 sum 14.796 -27.646 -2.197 31.433 Atomic orbital electron populations 1.20969 0.92874 1.03293 1.02066 1.24028 0.96750 0.98001 0.94566 1.23438 0.95343 1.01230 1.03665 1.22969 0.93399 0.98598 0.88248 1.22964 1.01912 0.89750 1.10516 1.19305 0.87321 0.85357 0.74810 1.90565 1.15571 1.86732 1.50554 1.43280 1.11772 1.02966 1.71863 1.17963 0.93114 0.86494 0.95076 1.21220 0.95730 0.97447 1.01257 1.21308 0.99669 0.91635 0.96088 1.19986 0.97738 0.93510 1.05416 1.18842 0.81624 0.88081 0.78525 1.90681 1.68987 1.43255 1.45310 1.46257 1.18420 1.16923 1.53265 1.18420 0.90431 0.80497 0.94114 0.98190 1.21895 0.96851 1.02064 0.98366 1.21546 0.90888 0.94735 1.51417 0.91052 1.25819 1.04116 0.94556 0.94102 1.70062 1.36351 0.99861 1.49171 0.85259 0.78432 0.78766 0.77649 1.18521 1.20833 1.20169 1.21154 0.92201 0.98016 0.95718 1.21078 1.02752 0.91556 1.00569 0.90223 0.91914 0.91624 0.85189 0.83898 0.82083 0.81056 0.72788 0.84070 0.84657 0.76172 0.94050 0.91181 0.96845 0.92445 0.84841 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 10.19 71.24 0.73 -1.03 16 2 C -0.12 -1.50 9.99 24.60 0.25 -1.25 16 3 C -0.22 -3.68 8.80 23.29 0.20 -3.47 16 4 C -0.01 -0.14 9.89 23.68 0.23 0.10 16 5 C -0.23 -2.32 10.07 23.64 0.24 -2.08 16 6 C 0.54 9.47 7.53 86.31 0.65 10.12 16 7 O -0.55 -14.19 10.37 -4.41 -0.05 -14.24 16 8 N -0.65 -9.34 5.30 -307.49 -1.63 -10.97 16 9 C 0.17 3.63 6.29 38.40 0.24 3.87 16 10 C -0.14 -3.57 8.66 22.36 0.19 -3.37 16 11 C -0.07 -2.01 9.53 22.50 0.21 -1.79 16 12 C -0.16 -5.62 5.88 -20.08 -0.12 -5.74 16 13 C 0.54 24.24 7.73 86.71 0.67 24.91 16 14 O -0.60 -31.60 16.00 -3.99 -0.06 -31.66 16 15 N -0.70 -31.97 5.02 -449.22 -2.25 -34.22 16 16 C 0.27 14.72 2.56 44.25 0.11 14.83 16 17 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 18 C -0.13 -7.05 9.26 71.98 0.67 -6.38 16 19 C -0.55 -30.21 8.73 25.60 0.22 -29.99 16 20 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 21 C 0.01 0.78 5.30 84.65 0.45 1.23 16 22 N -0.92 -53.71 11.32 21.45 0.24 -53.47 16 23 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 27 C -0.05 -1.48 9.58 22.50 0.22 -1.27 16 28 C -0.14 -2.88 9.95 22.35 0.22 -2.66 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.13 0.99 8.05 -2.91 -0.02 0.97 16 33 H 0.14 3.40 4.58 -45.20 -0.21 3.19 16 34 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 35 H 0.17 0.30 8.06 -2.91 -0.02 0.28 16 36 H 0.43 2.51 8.80 -92.71 -0.82 1.70 16 37 H 0.14 3.75 6.22 -2.91 -0.02 3.73 16 38 H 0.14 3.75 6.39 -2.91 -0.02 3.73 16 39 H 0.40 15.81 6.56 -92.71 -0.61 15.20 16 40 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.07 4.00 6.07 -2.39 -0.01 3.99 16 42 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 44 H 0.13 3.97 7.64 -2.91 -0.02 3.95 16 45 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -77.59 381.61 3.08 -74.51 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -0.59 Total: 28.84 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 5.39 Total: -3.98 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -3.64 Total: -98.66 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.11 Total: -45.90 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -77.59 3.08 -74.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493200124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.682 kcal (2) G-P(sol) polarization free energy of solvation -77.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds