Wall clock time and date at job start Tue Mar 31 2020 15:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46929 * 2 1 4 4 C 1.52997 * 109.46766 * 240.00272 * 2 1 3 5 5 C 1.47199 * 109.47583 * 59.99861 * 4 2 1 6 6 N 3.43555 * 83.99461 * 278.55476 * 2 1 3 7 7 C 1.52994 * 109.47163 * 120.00212 * 2 1 3 8 8 N 1.46497 * 109.47283 * 299.99646 * 7 2 1 9 9 C 1.34780 * 120.00068 * 179.72438 * 8 7 2 10 10 O 1.21718 * 119.99956 * 0.02562 * 9 8 7 11 11 C 1.46256 * 119.99800 * 180.02562 * 9 8 7 12 12 C 1.35022 * 119.99894 * 180.02562 * 11 9 8 13 13 C 1.46957 * 120.00300 * 180.02562 * 12 11 9 14 14 C 1.40029 * 120.09915 * 359.72225 * 13 12 11 15 15 C 1.37601 * 119.89798 * 179.69970 * 14 13 12 16 16 C 1.39180 * 120.09887 * 0.60088 * 15 14 13 17 17 O 1.35565 * 119.89376 * 179.69676 * 16 15 14 18 18 C 1.34792 * 116.99720 * 174.42235 * 17 16 15 19 19 H 1.07998 * 119.99415 * 5.05109 * 18 17 16 20 20 C 1.38711 * 120.00019 * 185.05884 * 18 17 16 21 21 N 1.31509 * 120.00308 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00153 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46612 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47242 * 119.99850 * 22 20 18 25 25 H 1.48501 * 109.46802 * 239.99820 * 22 20 18 26 26 C 1.39171 * 120.20408 * 359.67315 * 16 15 14 27 27 C 1.37600 * 120.10110 * 0.02662 * 26 16 15 28 28 H 1.09002 * 109.46658 * 299.99728 * 1 2 3 29 29 H 1.08997 * 109.46989 * 59.99936 * 1 2 3 30 30 H 1.09000 * 109.46947 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47024 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47676 * 300.00459 * 3 2 1 33 33 H 1.09002 * 109.47500 * 60.00144 * 3 2 1 34 34 H 1.08999 * 109.46900 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47111 * 299.99560 * 4 2 1 36 36 H 1.08999 * 109.46934 * 179.97438 * 7 2 1 37 37 H 1.09000 * 109.47417 * 60.00009 * 7 2 1 38 38 H 0.97000 * 119.99919 * 0.02562 * 8 7 2 39 39 H 1.08004 * 120.00191 * 0.02562 * 11 9 8 40 40 H 1.08004 * 119.99914 * 359.97438 * 12 11 9 41 41 H 1.08004 * 120.05337 * 359.97438 * 14 13 12 42 42 H 1.07999 * 119.94808 * 180.27028 * 15 14 13 43 43 H 0.96998 * 120.00252 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.94985 * 180.02562 * 26 16 15 45 45 H 1.07997 * 120.05103 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5493 -0.0273 -2.4512 6 7 1.1707 0.5082 -3.3787 7 6 2.0401 -0.7213 1.2492 8 7 1.5518 -0.0307 2.4454 9 6 1.8729 -0.4945 3.6695 10 8 2.5689 -1.4868 3.7811 11 6 1.3850 0.1947 4.8636 12 6 1.7070 -0.2696 6.0900 13 6 1.2163 0.4225 7.2899 14 6 0.4194 1.5670 7.1640 15 6 -0.0429 2.2082 8.2903 16 6 0.2908 1.7280 9.5533 17 8 -0.1619 2.3665 10.6602 18 6 0.0983 1.7882 11.8496 19 1 0.7141 0.9022 11.8960 20 6 -0.4250 2.3310 13.0140 21 7 -1.1746 3.4101 12.9575 22 14 -0.0639 1.5300 14.6625 23 1 0.7975 0.3382 14.4554 24 1 0.6361 2.5006 15.5416 25 1 -1.3387 1.1141 15.3005 26 6 1.0872 0.5942 9.6834 27 6 1.5490 -0.0571 8.5627 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 3.1301 -0.7216 1.2489 37 1 1.6768 -1.7489 1.2492 38 1 0.9939 0.7578 2.3564 39 1 0.7671 1.0750 4.7646 40 1 2.3246 -1.1501 6.1890 41 1 0.1644 1.9434 6.1843 42 1 -0.6611 3.0884 8.1941 43 1 -1.5402 3.7898 13.7717 44 1 1.3433 0.2249 10.6655 45 1 2.1667 -0.9371 8.6646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493468745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:05 Heat of formation + Delta-G solvation = -12.069689 kcal Electronic energy + Delta-G solvation = -25455.603943 eV Core-core repulsion = 21631.820269 eV Total energy + Delta-G solvation = -3823.783674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.07317 -39.21465 -38.54539 -36.92387 -36.36854 -33.64779 -33.21206 -32.30443 -30.45133 -29.01828 -28.52240 -27.84261 -26.80079 -25.62488 -23.17311 -22.17662 -20.87395 -20.15312 -19.32731 -18.20165 -17.76290 -17.18276 -17.12431 -15.83143 -15.80394 -15.41916 -15.06722 -14.81276 -14.75759 -14.39579 -14.16283 -13.91028 -13.84022 -13.79423 -13.39141 -13.08138 -13.04580 -12.96369 -12.75612 -12.60662 -12.31941 -12.01890 -11.95962 -11.78430 -11.73418 -11.48624 -11.35633 -11.29331 -11.16027 -11.08840 -10.68203 -10.54598 -9.84772 -9.63208 -9.51384 -9.18696 -8.87075 -8.40287 -7.13529 -6.67029 -4.21910 1.04688 2.11578 2.28149 2.36162 2.53558 3.02297 3.03616 3.09362 3.12511 3.52423 3.55539 3.80653 4.14278 4.15890 4.27785 4.49111 4.65703 4.89942 4.90528 4.96509 5.00936 5.02571 5.14638 5.23996 5.27307 5.27871 5.42553 5.43100 5.50703 5.52027 5.61730 5.64925 5.74420 5.75822 5.99377 6.09827 6.28982 6.44596 6.46298 6.58810 6.77121 6.90197 7.11123 7.12647 7.21700 7.26057 7.48497 7.61965 7.78410 8.29927 8.77911 9.44671 10.49612 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.036177 B = 0.001613 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.787579 B =17352.863327 C =17921.172190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.071 4.071 3 C -0.149 4.149 4 C -0.019 4.019 5 C 0.212 3.788 6 N -0.438 5.438 7 C 0.133 3.867 8 N -0.732 5.732 9 C 0.557 3.443 10 O -0.558 6.558 11 C -0.285 4.285 12 C 0.040 3.960 13 C -0.200 4.200 14 C -0.043 4.043 15 C -0.200 4.200 16 C 0.167 3.833 17 O -0.162 6.162 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.042 3.958 21 N -0.851 5.851 22 Si 0.945 3.055 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.242 4.242 27 C -0.035 4.035 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.400 0.600 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.274 0.726 44 H 0.131 0.869 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 -6.864 -20.858 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.073 4.073 3 C -0.207 4.207 4 C -0.059 4.059 5 C -0.106 4.106 6 N -0.114 5.114 7 C 0.009 3.991 8 N -0.385 5.385 9 C 0.349 3.651 10 O -0.439 6.439 11 C -0.306 4.306 12 C 0.020 3.980 13 C -0.201 4.201 14 C -0.061 4.061 15 C -0.219 4.219 16 C 0.110 3.890 17 O -0.063 6.063 18 C -0.468 4.468 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.484 5.484 22 Si 0.769 3.231 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.261 4.261 27 C -0.053 4.053 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.235 0.765 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.149 0.851 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.879 -6.376 -21.957 23.379 hybrid contribution -0.001 -0.132 1.115 1.123 sum 4.877 -6.508 -20.842 22.373 Atomic orbital electron populations 1.21986 0.93242 1.02943 1.02515 1.20777 0.96967 0.96423 0.93141 1.21983 1.01864 0.94316 1.02516 1.19362 1.02621 0.98882 0.85072 1.29003 0.93490 0.93792 0.94333 1.81269 1.09135 1.09361 1.11677 1.21236 0.99419 0.95943 0.82524 1.45855 1.54906 1.32430 1.05325 1.18384 0.79478 0.83747 0.83503 1.90779 1.39201 1.26767 1.87156 1.22418 1.11063 1.05228 0.91906 1.22285 0.89961 0.94598 0.91159 1.18464 1.08829 1.00590 0.92198 1.20879 0.94551 0.93525 0.97146 1.20155 1.07761 1.04135 0.89843 1.19617 0.91078 0.90192 0.88084 1.83905 1.65652 1.44446 1.12338 1.21531 1.32563 1.12029 0.80726 0.88459 1.25396 0.95499 0.96134 0.99427 1.70020 1.29651 1.19072 1.29672 0.85582 0.78702 0.79009 0.79818 1.18842 1.19914 1.19906 1.21103 1.05877 0.99826 0.99337 1.20991 0.95725 0.97203 0.91380 0.91627 0.92403 0.91601 0.91603 0.92413 0.91620 0.86787 0.86782 0.90979 0.90982 0.76464 0.85965 0.85927 0.86424 0.86148 0.91634 0.85118 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 8.05 37.16 0.30 -0.38 16 2 C -0.07 -0.28 0.55 -154.51 -0.09 -0.37 16 3 C -0.15 -0.68 8.05 37.16 0.30 -0.38 16 4 C -0.02 -0.05 4.79 -29.52 -0.14 -0.19 16 5 C 0.21 1.34 12.89 -20.76 -0.27 1.07 16 6 N -0.44 -4.29 18.54 42.15 0.78 -3.51 16 7 C 0.13 0.80 4.56 -4.05 -0.02 0.78 16 8 N -0.73 -5.91 4.95 -61.76 -0.31 -6.22 16 9 C 0.56 6.84 7.74 -13.04 -0.10 6.74 16 10 O -0.56 -8.81 16.23 5.17 0.08 -8.73 16 11 C -0.29 -3.55 9.41 -37.50 -0.35 -3.90 16 12 C 0.04 0.57 9.45 -37.20 -0.35 0.22 16 13 C -0.20 -3.27 5.87 -105.03 -0.62 -3.89 16 14 C -0.04 -0.70 9.40 -39.14 -0.37 -1.07 16 15 C -0.20 -3.89 9.97 -39.46 -0.39 -4.29 16 16 C 0.17 3.76 6.66 -38.89 -0.26 3.50 16 17 O -0.16 -4.35 9.74 0.73 0.01 -4.35 16 18 C -0.39 -10.31 9.48 30.91 0.29 -10.02 16 19 H 0.10 2.35 5.18 -52.49 -0.27 2.07 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.85 -23.58 13.67 55.48 0.76 -22.83 16 22 Si 0.94 19.29 29.55 -169.99 -5.02 14.26 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 C -0.24 -4.90 9.14 -39.47 -0.36 -5.26 16 27 C -0.03 -0.60 9.78 -39.15 -0.38 -0.98 16 28 H 0.06 0.30 6.86 -51.93 -0.36 -0.05 16 29 H 0.06 0.32 7.23 -51.93 -0.38 -0.06 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.31 7.23 -51.93 -0.38 -0.06 16 33 H 0.06 0.30 6.86 -51.93 -0.36 -0.06 16 34 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.40 2.44 6.14 -40.82 -0.25 2.19 16 39 H 0.12 1.30 6.07 -52.48 -0.32 0.98 16 40 H 0.12 1.75 7.52 -52.48 -0.39 1.35 16 41 H 0.12 1.54 6.16 -52.48 -0.32 1.22 16 42 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.13 2.63 5.62 -52.49 -0.29 2.33 16 45 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -32.61 383.44 -6.66 -39.27 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.83 Total: 3.75 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.90 Total: -17.44 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 1.23 Total: -32.55 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.61 -6.66 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493468745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.203 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds