Wall clock time and date at job start Tue Mar 31 2020 15:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46929 * 2 1 4 4 C 1.52997 * 109.46766 * 240.00272 * 2 1 3 5 5 C 1.47199 * 109.47583 * 59.99861 * 4 2 1 6 6 N 3.43555 * 83.99461 * 278.55476 * 2 1 3 7 7 C 1.52994 * 109.47163 * 120.00212 * 2 1 3 8 8 N 1.46497 * 109.47283 * 299.99646 * 7 2 1 9 9 C 1.34780 * 120.00068 * 179.72438 * 8 7 2 10 10 O 1.21718 * 119.99956 * 0.02562 * 9 8 7 11 11 C 1.46256 * 119.99800 * 180.02562 * 9 8 7 12 12 C 1.35022 * 119.99894 * 180.02562 * 11 9 8 13 13 C 1.46957 * 120.00300 * 180.02562 * 12 11 9 14 14 C 1.40029 * 120.09915 * 359.72225 * 13 12 11 15 15 C 1.37601 * 119.89798 * 179.69970 * 14 13 12 16 16 C 1.39180 * 120.09887 * 0.60088 * 15 14 13 17 17 O 1.35565 * 119.89376 * 179.69676 * 16 15 14 18 18 C 1.34792 * 116.99720 * 174.42235 * 17 16 15 19 19 H 1.07998 * 119.99415 * 5.05109 * 18 17 16 20 20 C 1.38711 * 120.00019 * 185.05884 * 18 17 16 21 21 N 1.31509 * 120.00308 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00153 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46612 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47242 * 119.99850 * 22 20 18 25 25 H 1.48501 * 109.46802 * 239.99820 * 22 20 18 26 26 C 1.39171 * 120.20408 * 359.67315 * 16 15 14 27 27 C 1.37600 * 120.10110 * 0.02662 * 26 16 15 28 28 H 1.09002 * 109.46658 * 299.99728 * 1 2 3 29 29 H 1.08997 * 109.46989 * 59.99936 * 1 2 3 30 30 H 1.09000 * 109.46947 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47024 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47676 * 300.00459 * 3 2 1 33 33 H 1.09002 * 109.47500 * 60.00144 * 3 2 1 34 34 H 1.08999 * 109.46900 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47111 * 299.99560 * 4 2 1 36 36 H 1.08999 * 109.46934 * 179.97438 * 7 2 1 37 37 H 1.09000 * 109.47417 * 60.00009 * 7 2 1 38 38 H 0.97000 * 119.99919 * 0.02562 * 8 7 2 39 39 H 1.08004 * 120.00191 * 0.02562 * 11 9 8 40 40 H 1.08004 * 119.99914 * 359.97438 * 12 11 9 41 41 H 1.08004 * 120.05337 * 359.97438 * 14 13 12 42 42 H 1.07999 * 119.94808 * 180.27028 * 15 14 13 43 43 H 0.96998 * 120.00252 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.94985 * 180.02562 * 26 16 15 45 45 H 1.07997 * 120.05103 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5493 -0.0273 -2.4512 6 7 1.1707 0.5082 -3.3787 7 6 2.0401 -0.7213 1.2492 8 7 1.5518 -0.0307 2.4454 9 6 1.8729 -0.4945 3.6695 10 8 2.5689 -1.4868 3.7811 11 6 1.3850 0.1947 4.8636 12 6 1.7070 -0.2696 6.0900 13 6 1.2163 0.4225 7.2899 14 6 0.4194 1.5670 7.1640 15 6 -0.0429 2.2082 8.2903 16 6 0.2908 1.7280 9.5533 17 8 -0.1619 2.3665 10.6602 18 6 0.0983 1.7882 11.8496 19 1 0.7141 0.9022 11.8960 20 6 -0.4250 2.3310 13.0140 21 7 -1.1746 3.4101 12.9575 22 14 -0.0639 1.5300 14.6625 23 1 0.7975 0.3382 14.4554 24 1 0.6361 2.5006 15.5416 25 1 -1.3387 1.1141 15.3005 26 6 1.0872 0.5942 9.6834 27 6 1.5490 -0.0571 8.5627 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 3.1301 -0.7216 1.2489 37 1 1.6768 -1.7489 1.2492 38 1 0.9939 0.7578 2.3564 39 1 0.7671 1.0750 4.7646 40 1 2.3246 -1.1501 6.1890 41 1 0.1644 1.9434 6.1843 42 1 -0.6611 3.0884 8.1941 43 1 -1.5402 3.7898 13.7717 44 1 1.3433 0.2249 10.6655 45 1 2.1667 -0.9371 8.6646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493468745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:04 Heat of formation + Delta-G solvation = -32.142400 kcal Electronic energy + Delta-G solvation = -25456.474361 eV Core-core repulsion = 21631.820269 eV Total energy + Delta-G solvation = -3824.654092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.94897 -40.69426 -39.23976 -38.43210 -37.01127 -34.69445 -34.40412 -33.92100 -31.93801 -29.93622 -29.23208 -28.20273 -27.76623 -27.21103 -24.40561 -23.63950 -22.08714 -20.82694 -20.41691 -19.68145 -18.81436 -18.27631 -18.08576 -16.74600 -16.47438 -16.33367 -16.31958 -15.97917 -15.68213 -15.59063 -15.56767 -15.19164 -14.73425 -14.57738 -14.56097 -14.25283 -14.07770 -13.59913 -13.53965 -13.50458 -13.34367 -13.21465 -13.09233 -12.76500 -12.70472 -12.53378 -12.35542 -12.16441 -12.09557 -11.88491 -11.69597 -11.68075 -11.18754 -11.08924 -10.89604 -10.54493 -9.92707 -9.86335 -8.63913 -8.50913 -6.17066 -0.18572 0.61194 1.18879 1.36908 1.46550 1.54729 1.79072 1.89398 2.16246 2.40735 2.46536 2.88956 3.09388 3.20696 3.45121 3.77164 3.80360 3.88667 3.93521 3.99325 4.11613 4.29578 4.36710 4.41558 4.51187 4.61373 4.69270 4.79145 4.83270 4.87471 4.88009 4.97904 5.03699 5.05804 5.07152 5.12910 5.22671 5.32301 5.37561 5.39091 5.40401 5.58554 5.63557 5.67058 5.86232 5.99205 6.13879 6.67076 6.69067 6.93752 7.38951 7.71355 8.71353 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.036177 B = 0.001613 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.787579 B =17352.863327 C =17921.172190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.057 4.057 3 C -0.151 4.151 4 C -0.019 4.019 5 C 0.240 3.760 6 N -0.505 5.505 7 C 0.131 3.869 8 N -0.714 5.714 9 C 0.552 3.448 10 O -0.592 6.592 11 C -0.245 4.245 12 C 0.012 3.988 13 C -0.169 4.169 14 C -0.038 4.038 15 C -0.207 4.207 16 C 0.128 3.872 17 O -0.221 6.221 18 C -0.416 4.416 19 H 0.106 0.894 20 C -0.018 4.018 21 N -0.914 5.914 22 Si 1.018 2.982 23 H -0.250 1.250 24 H -0.269 1.269 25 H -0.269 1.269 26 C -0.249 4.249 27 C -0.041 4.041 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.412 0.588 39 H 0.149 0.851 40 H 0.126 0.874 41 H 0.161 0.839 42 H 0.121 0.879 43 H 0.274 0.726 44 H 0.123 0.877 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.657 -8.954 -23.705 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.059 4.059 3 C -0.209 4.209 4 C -0.059 4.059 5 C -0.077 4.077 6 N -0.183 5.183 7 C 0.008 3.992 8 N -0.366 5.366 9 C 0.343 3.657 10 O -0.475 6.475 11 C -0.265 4.265 12 C -0.008 4.008 13 C -0.169 4.169 14 C -0.056 4.056 15 C -0.227 4.227 16 C 0.076 3.924 17 O -0.127 6.127 18 C -0.492 4.492 19 H 0.123 0.877 20 C -0.217 4.217 21 N -0.551 5.551 22 Si 0.837 3.163 23 H -0.174 1.174 24 H -0.194 1.194 25 H -0.194 1.194 26 C -0.268 4.268 27 C -0.059 4.059 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.250 0.750 39 H 0.167 0.833 40 H 0.143 0.857 41 H 0.178 0.822 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.141 0.859 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.332 -8.480 -24.902 27.057 hybrid contribution -0.298 0.333 1.312 1.386 sum 6.034 -8.147 -23.590 25.676 Atomic orbital electron populations 1.22011 0.93609 1.03224 1.02048 1.20618 0.96473 0.95989 0.92807 1.22008 1.02308 0.94515 1.02049 1.19657 1.04206 0.99440 0.82622 1.29594 0.91712 0.92303 0.94053 1.81301 1.11461 1.11572 1.13936 1.21377 0.99726 0.96100 0.82013 1.45777 1.53652 1.32307 1.04830 1.18382 0.79394 0.83406 0.84544 1.90787 1.40718 1.28250 1.87738 1.22818 1.07875 1.04367 0.91480 1.22157 0.92168 0.95675 0.90797 1.18814 1.05981 0.99368 0.92773 1.21295 0.93489 0.92937 0.97889 1.20429 1.07927 1.04509 0.89793 1.20202 0.92286 0.91587 0.88356 1.83886 1.68985 1.46578 1.13223 1.21936 1.33185 1.12641 0.81406 0.87706 1.26591 0.95234 0.96684 1.03192 1.70153 1.32740 1.21630 1.30606 0.84531 0.78764 0.78342 0.74622 1.17367 1.19356 1.19375 1.21199 1.05830 0.99535 1.00255 1.21325 0.95834 0.97957 0.90830 0.91521 0.93525 0.90965 0.90948 0.93538 0.91509 0.84152 0.84160 0.90554 0.90589 0.75001 0.83344 0.85654 0.82173 0.86060 0.91649 0.85899 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.05 71.98 0.58 -0.31 16 2 C -0.06 -0.23 0.55 -52.18 -0.03 -0.26 16 3 C -0.15 -0.88 8.05 71.98 0.58 -0.30 16 4 C -0.02 -0.03 4.79 28.79 0.14 0.11 16 5 C 0.24 2.52 12.89 89.44 1.15 3.68 16 6 N -0.50 -9.48 18.54 20.01 0.37 -9.11 16 7 C 0.13 0.99 4.56 86.38 0.39 1.39 16 8 N -0.71 -8.13 4.95 -467.51 -2.32 -10.45 16 9 C 0.55 10.99 7.74 86.33 0.67 11.66 16 10 O -0.59 -16.41 16.23 -4.41 -0.07 -16.48 16 11 C -0.24 -4.82 9.41 23.61 0.22 -4.59 16 12 C 0.01 0.29 9.45 23.82 0.23 0.52 16 13 C -0.17 -4.97 5.87 -20.13 -0.12 -5.09 16 14 C -0.04 -1.14 9.40 22.55 0.21 -0.93 16 15 C -0.21 -8.07 9.97 22.35 0.22 -7.85 16 16 C 0.13 6.00 6.66 22.72 0.15 6.15 16 17 O -0.22 -12.74 9.74 -20.32 -0.20 -12.93 16 18 C -0.42 -23.25 9.48 67.93 0.64 -22.60 16 19 H 0.11 5.36 5.18 -2.91 -0.02 5.34 16 20 C -0.02 -1.01 5.49 84.85 0.47 -0.54 16 21 N -0.91 -54.16 13.67 21.62 0.30 -53.86 16 22 Si 1.02 41.21 29.55 68.60 2.03 43.24 16 23 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 24 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 25 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 26 C -0.25 -10.25 9.14 22.34 0.20 -10.05 16 27 C -0.04 -1.36 9.78 22.55 0.22 -1.14 16 28 H 0.07 0.37 6.86 -2.39 -0.02 0.36 16 29 H 0.05 0.41 7.23 -2.39 -0.02 0.39 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.05 0.41 7.23 -2.39 -0.02 0.39 16 33 H 0.07 0.37 6.86 -2.39 -0.02 0.35 16 34 H 0.14 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.14 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.41 2.91 6.14 -92.71 -0.57 2.35 16 39 H 0.15 2.15 6.07 -2.91 -0.02 2.13 16 40 H 0.13 3.10 7.52 -2.91 -0.02 3.08 16 41 H 0.16 3.34 6.16 -2.91 -0.02 3.32 16 42 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 43 H 0.27 14.84 8.31 -92.71 -0.77 14.06 16 44 H 0.12 5.15 5.62 -2.91 -0.02 5.13 16 45 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -78.16 383.44 6.50 -71.66 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.46 Total: 18.11 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 5.93 Total: -30.18 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -1.65 Total: -73.42 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.27 Total: -29.42 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -78.16 6.50 -71.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493468745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.517 kcal (2) G-P(sol) polarization free energy of solvation -78.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds