Wall clock time and date at job start Tue Mar 31 2020 15:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47008 * 2 1 4 4 C 1.53000 * 109.47491 * 239.99974 * 2 1 3 5 5 C 1.47193 * 109.47155 * 59.99824 * 4 2 1 6 6 N 3.43551 * 83.99762 * 278.55131 * 2 1 3 7 7 C 1.53008 * 109.47485 * 119.99713 * 2 1 3 8 8 N 1.46498 * 109.46632 * 300.00409 * 7 2 1 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 2 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47098 * 90.00722 * 22 20 18 24 24 H 1.48507 * 109.46797 * 210.00341 * 22 20 18 25 25 H 1.48504 * 109.47379 * 330.00326 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.08995 * 109.47262 * 299.99915 * 1 2 3 29 29 H 1.09003 * 109.46958 * 60.00522 * 1 2 3 30 30 H 1.09005 * 109.46635 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47029 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46835 * 299.99553 * 3 2 1 33 33 H 1.08995 * 109.47039 * 59.99949 * 3 2 1 34 34 H 1.09004 * 109.47487 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.47057 * 299.99998 * 4 2 1 36 36 H 1.08992 * 109.47442 * 180.02562 * 7 2 1 37 37 H 1.09003 * 109.46758 * 59.99722 * 7 2 1 38 38 H 0.96995 * 120.00513 * 359.97438 * 8 7 2 39 39 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 40 40 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 41 41 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 42 42 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 43 43 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 45 45 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5494 -0.0274 -2.4511 6 7 1.1707 0.5080 -3.3787 7 6 2.0401 -0.7212 1.2493 8 7 1.5516 -0.0305 2.4454 9 6 1.8769 -0.4913 3.6696 10 8 2.5760 -1.4813 3.7813 11 6 1.3843 0.1947 4.8637 12 6 1.5889 -0.3444 6.0846 13 6 2.0784 -1.7248 6.2057 14 6 1.5400 -2.7342 5.3983 15 6 2.0047 -4.0243 5.5117 16 6 3.0010 -4.3287 6.4348 17 8 3.4525 -5.6021 6.5465 18 6 4.4968 -5.8107 7.3726 19 1 4.8826 -4.9987 7.9709 20 6 5.0760 -7.0686 7.4543 21 7 4.6064 -8.0573 6.7254 22 14 6.5229 -7.3579 8.5998 23 1 6.0222 -7.7749 9.9342 24 1 7.3908 -8.4256 8.0410 25 1 7.3061 -6.1034 8.7347 26 6 3.5353 -3.3297 7.2431 27 6 3.0807 -2.0357 7.1326 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 3.1301 -0.7208 -1.2494 35 1 1.6767 -1.7489 -1.2492 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2493 38 1 0.9942 0.7582 2.3564 39 1 0.8570 1.1325 4.7689 40 1 1.3928 0.2388 6.9722 41 1 0.7640 -2.4996 4.6845 42 1 1.5927 -4.8028 4.8868 43 1 5.0116 -8.9368 6.7823 44 1 4.3079 -3.5705 7.9582 45 1 3.4963 -1.2610 7.7601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493468753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:07 Heat of formation + Delta-G solvation = -16.425366 kcal Electronic energy + Delta-G solvation = -26644.330087 eV Core-core repulsion = 22820.357536 eV Total energy + Delta-G solvation = -3823.972550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.11650 -40.47062 -39.34134 -38.07042 -36.97923 -34.55491 -34.36270 -33.82545 -31.76154 -29.82993 -29.23262 -28.20734 -27.72630 -27.17394 -24.23290 -23.42388 -22.37402 -20.76775 -20.29287 -19.68938 -18.82258 -18.20038 -18.00058 -16.63758 -16.43106 -16.32974 -16.22242 -15.87011 -15.76684 -15.46943 -15.45493 -15.05493 -14.57942 -14.51692 -14.42930 -14.25331 -14.07698 -13.68977 -13.55736 -13.52579 -13.48800 -13.24942 -12.97562 -12.75146 -12.59853 -12.38442 -12.29747 -12.17482 -12.09264 -11.88575 -11.71411 -11.68833 -11.19224 -10.91579 -10.59385 -10.32394 -9.90326 -9.48579 -8.49734 -8.44840 -6.12115 0.06987 0.77596 1.19078 1.35678 1.47737 1.53951 1.76300 1.85383 2.19531 2.47861 2.59571 2.90996 3.07098 3.26227 3.57822 3.76003 3.79231 3.89457 4.08064 4.14943 4.22303 4.25456 4.29348 4.58548 4.60688 4.66486 4.77370 4.81241 4.82877 4.85966 4.87251 5.01692 5.05767 5.10474 5.13187 5.14787 5.30979 5.33759 5.35850 5.40066 5.53016 5.66547 5.74027 5.78151 5.91261 6.06435 6.31023 6.63199 6.81056 6.98898 7.56522 7.81812 8.77783 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.002374 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.966326 B =11791.373835 C =12968.098491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.147 4.147 4 C -0.023 4.023 5 C 0.241 3.759 6 N -0.500 5.500 7 C 0.132 3.868 8 N -0.713 5.713 9 C 0.526 3.474 10 O -0.566 6.566 11 C -0.230 4.230 12 C 0.000 4.000 13 C -0.158 4.158 14 C 0.017 3.983 15 C -0.219 4.219 16 C 0.126 3.874 17 O -0.231 6.231 18 C -0.413 4.413 19 H 0.102 0.898 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.261 1.261 24 H -0.271 1.271 25 H -0.254 1.254 26 C -0.260 4.260 27 C -0.050 4.050 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.412 0.588 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.273 0.727 44 H 0.117 0.883 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 22.181 -8.401 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.058 4.058 3 C -0.205 4.205 4 C -0.063 4.063 5 C -0.075 4.075 6 N -0.178 5.178 7 C 0.008 3.992 8 N -0.367 5.367 9 C 0.317 3.683 10 O -0.446 6.446 11 C -0.250 4.250 12 C -0.019 4.019 13 C -0.159 4.159 14 C -0.002 4.002 15 C -0.239 4.239 16 C 0.075 3.925 17 O -0.138 6.138 18 C -0.489 4.489 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.839 3.161 23 H -0.186 1.186 24 H -0.195 1.195 25 H -0.177 1.177 26 C -0.280 4.280 27 C -0.068 4.068 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.250 0.750 39 H 0.189 0.811 40 H 0.182 0.818 41 H 0.141 0.859 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.362 21.866 -9.909 25.110 hybrid contribution 0.564 -0.649 0.375 0.938 sum -6.799 21.216 -9.534 24.233 Atomic orbital electron populations 1.21981 0.93233 1.03036 1.02326 1.20607 0.96735 0.96136 0.92279 1.21976 1.02064 0.94115 1.02321 1.19634 1.04005 0.99399 0.83261 1.29468 0.91758 0.92310 0.93975 1.81283 1.11373 1.11562 1.13545 1.21262 0.99230 0.95886 0.82822 1.45830 1.53634 1.32484 1.04725 1.18988 0.80592 0.83764 0.84989 1.91017 1.39588 1.27176 1.86841 1.23085 1.07073 1.03722 0.91113 1.22540 0.89856 0.90907 0.98600 1.18871 1.01828 0.94520 1.00666 1.20680 0.96241 0.90051 0.93201 1.20194 1.02556 0.98304 1.02833 1.20031 0.93544 0.84859 0.94072 1.83872 1.45980 1.23411 1.60508 1.21859 1.08549 0.97982 1.20540 0.88106 1.26641 1.01938 0.93816 0.99789 1.70170 1.42665 1.02308 1.40751 0.84570 0.75568 0.79014 0.76922 1.18591 1.19539 1.17717 1.21080 1.06966 0.94434 1.05479 1.21168 0.94829 0.94569 0.96213 0.90927 0.93241 0.91546 0.91400 0.93262 0.90930 0.84666 0.84838 0.91573 0.91721 0.74995 0.81097 0.81801 0.85929 0.87965 0.91818 0.86480 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.05 71.98 0.58 -0.59 16 2 C -0.06 -0.42 0.55 -52.18 -0.03 -0.45 16 3 C -0.15 -1.08 8.05 71.98 0.58 -0.50 16 4 C -0.02 -0.15 4.79 28.79 0.14 -0.01 16 5 C 0.24 3.29 12.89 89.44 1.15 4.44 16 6 N -0.50 -10.46 18.54 20.00 0.37 -10.09 16 7 C 0.13 1.68 4.56 86.38 0.39 2.08 16 8 N -0.71 -9.58 4.95 -467.49 -2.32 -11.90 16 9 C 0.53 11.63 6.77 86.32 0.58 12.22 16 10 O -0.57 -19.15 12.17 -4.40 -0.05 -19.20 16 11 C -0.23 -3.81 9.90 23.62 0.23 -3.57 16 12 C 0.00 0.01 9.80 23.82 0.23 0.24 16 13 C -0.16 -5.17 4.54 -20.13 -0.09 -5.26 16 14 C 0.02 0.62 6.59 22.55 0.15 0.77 16 15 C -0.22 -10.28 9.97 22.35 0.22 -10.06 16 16 C 0.13 6.68 6.66 22.72 0.15 6.83 16 17 O -0.23 -14.58 9.74 -20.28 -0.20 -14.78 16 18 C -0.41 -24.89 9.48 67.94 0.64 -24.25 16 19 H 0.10 5.59 5.18 -2.91 -0.02 5.57 16 20 C -0.02 -1.43 5.49 84.86 0.47 -0.96 16 21 N -0.92 -57.78 13.67 21.62 0.30 -57.49 16 22 Si 1.02 43.73 29.55 68.60 2.03 45.76 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 26 C -0.26 -12.00 9.14 22.34 0.20 -11.80 16 27 C -0.05 -1.80 9.78 22.55 0.22 -1.58 16 28 H 0.07 0.44 6.86 -2.39 -0.02 0.42 16 29 H 0.05 0.49 7.23 -2.39 -0.02 0.48 16 30 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.47 7.23 -2.39 -0.02 0.45 16 33 H 0.07 0.40 6.86 -2.39 -0.02 0.38 16 34 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.41 2.88 6.14 -92.71 -0.57 2.31 16 39 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.12 3.97 7.02 -2.91 -0.02 3.95 16 42 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.12 5.44 5.62 -2.91 -0.02 5.42 16 45 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -86.51 378.52 6.41 -80.10 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.45 Total: 20.06 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 5.83 Total: -32.46 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -1.65 Total: -79.48 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.25 Total: -33.98 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -86.51 6.41 -80.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493468753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.676 kcal (2) G-P(sol) polarization free energy of solvation -86.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds