Wall clock time and date at job start Tue Mar 31 2020 15:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33416 * 119.99742 * 2 1 4 4 C 1.46322 * 120.00118 * 180.02562 * 3 2 1 5 5 C 1.35207 * 120.00358 * 179.97438 * 4 3 2 6 6 C 1.46206 * 120.00473 * 179.97438 * 5 4 3 7 7 O 1.21732 * 119.99569 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00556 * 180.02562 * 6 5 4 9 9 C 1.39295 * 120.00031 * 185.19065 * 8 6 5 10 10 C 1.39169 * 119.92889 * 33.55873 * 9 8 6 11 11 C 1.37653 * 120.06712 * 179.72051 * 10 9 8 12 12 C 1.39759 * 119.93068 * 0.25572 * 11 10 9 13 13 C 1.47584 * 120.07375 * 180.02562 * 12 11 10 14 14 O 1.21589 * 119.99652 * 328.85593 * 13 12 11 15 15 N 1.34776 * 120.00238 * 148.85096 * 13 12 11 16 16 C 1.46493 * 119.99825 * 3.64165 * 15 13 12 17 17 C 1.46502 * 119.99777 * 183.63606 * 15 13 12 18 18 C 1.50703 * 109.46585 * 90.00503 * 17 15 13 19 19 H 1.07997 * 120.00555 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99435 * 179.97438 * 18 17 15 21 21 N 1.31518 * 120.00414 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99677 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47081 * 89.99928 * 22 20 18 24 24 H 1.48508 * 109.46894 * 209.99965 * 22 20 18 25 25 H 1.48498 * 109.46817 * 329.99595 * 22 20 18 26 26 C 1.39765 * 119.85993 * 359.97438 * 12 11 10 27 27 C 1.37647 * 119.92798 * 0.02562 * 26 12 11 28 28 H 1.09003 * 109.46632 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47626 * 300.00127 * 1 2 3 30 30 H 1.08998 * 109.47305 * 60.00577 * 1 2 3 31 31 H 1.08001 * 120.00032 * 179.97438 * 2 1 3 32 32 H 1.08001 * 120.00242 * 359.97438 * 3 2 1 33 33 H 1.08010 * 119.99885 * 359.97438 * 4 3 2 34 34 H 1.08001 * 120.00002 * 359.97438 * 5 4 3 35 35 H 0.96996 * 119.99259 * 5.18660 * 8 6 5 36 36 H 1.07990 * 119.96644 * 359.97438 * 10 9 8 37 37 H 1.08008 * 120.03349 * 180.26948 * 11 10 9 38 38 H 1.08999 * 109.47410 * 94.27468 * 16 15 13 39 39 H 1.09000 * 109.46950 * 214.27238 * 16 15 13 40 40 H 1.08997 * 109.47493 * 334.26848 * 16 15 13 41 41 H 1.08998 * 109.46644 * 210.00067 * 17 15 13 42 42 H 1.08999 * 109.47344 * 330.00292 * 17 15 13 43 43 H 0.97000 * 119.99835 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.03340 * 180.02562 * 26 12 11 45 45 H 1.07997 * 119.96421 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1741 1.1554 0.0000 4 6 3.6373 1.1555 -0.0006 5 6 4.3133 2.3265 -0.0011 6 6 5.7754 2.3266 -0.0011 7 8 6.3841 1.2724 -0.0001 8 7 6.4493 3.4938 -0.0011 9 6 7.8380 3.4963 -0.1102 10 6 8.4761 2.5236 -0.8741 11 6 9.8479 2.5268 -0.9886 12 6 10.6002 3.5049 -0.3324 13 6 12.0710 3.5117 -0.4534 14 8 12.6739 2.4656 -0.5976 15 7 12.7459 4.6772 -0.4042 16 6 12.0284 5.9290 -0.1509 17 6 14.1972 4.6922 -0.6039 18 6 14.5007 4.8688 -2.0695 19 1 13.6934 4.9603 -2.7810 20 6 15.8091 4.9136 -2.5020 21 7 16.7923 4.8028 -1.6355 22 14 16.1853 5.1318 -4.3187 23 1 16.2931 6.5795 -4.6315 24 1 17.4687 4.4584 -4.6428 25 1 15.0934 4.5309 -5.1259 26 6 9.9565 4.4775 0.4379 27 6 8.5845 4.4689 0.5484 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 2.0471 -0.9353 0.0004 32 1 1.6341 2.0908 -0.0004 33 1 4.1774 0.2202 -0.0006 34 1 3.7733 3.2618 -0.0015 35 1 5.9672 4.3320 0.0749 36 1 7.8943 1.7681 -1.3808 37 1 10.3423 1.7743 -1.5851 38 1 12.0564 6.1546 0.9151 39 1 12.5026 6.7383 -0.7061 40 1 10.9923 5.8256 -0.4734 41 1 14.6329 5.5174 -0.0407 42 1 14.6217 3.7505 -0.2559 43 1 17.7128 4.8347 -1.9398 44 1 10.5350 5.2349 0.9458 45 1 8.0865 5.2203 1.1431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493502992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:24 Heat of formation + Delta-G solvation = 7.059239 kcal Electronic energy + Delta-G solvation = -25837.163179 eV Core-core repulsion = 22014.208997 eV Total energy + Delta-G solvation = -3822.954181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.78058 -39.51989 -37.77270 -36.32387 -34.97779 -34.83409 -32.88529 -32.60737 -30.96929 -30.11674 -27.99564 -27.40795 -26.08786 -24.30547 -23.19600 -22.51475 -21.64075 -20.25909 -20.04535 -19.10942 -17.82543 -17.49670 -16.64217 -16.49372 -15.73159 -15.31845 -15.21349 -15.08345 -14.60665 -14.44769 -14.24409 -13.97066 -13.90321 -13.84819 -13.37374 -13.22697 -12.74872 -12.67100 -12.42163 -12.30347 -12.22970 -12.11080 -11.82705 -11.59801 -11.32597 -11.21050 -10.93348 -10.78657 -10.57168 -10.43725 -10.13840 -10.11942 -9.60986 -8.98522 -8.88886 -8.83862 -8.41562 -8.08594 -7.61746 -6.02206 -4.07097 0.23558 1.07882 1.46959 2.09935 2.80622 2.99879 3.31901 3.38409 3.41630 3.46127 3.90585 4.15588 4.19816 4.41348 4.46995 4.61932 4.68821 4.85209 4.88805 4.95728 5.03254 5.09030 5.12511 5.31810 5.32285 5.40250 5.46041 5.51045 5.59906 5.68920 5.86579 5.87061 5.99053 6.07848 6.16485 6.18608 6.23596 6.27504 6.44237 6.57978 6.96976 7.10589 7.13429 7.47305 7.55411 7.84716 7.94387 8.25191 8.41786 8.91735 9.10175 9.57958 11.05843 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029188 B = 0.001827 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.065437 B =15325.505208 C =15659.538700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C -0.161 4.161 4 C -0.022 4.022 5 C -0.219 4.219 6 C 0.544 3.456 7 O -0.522 6.522 8 N -0.668 5.668 9 C 0.155 3.845 10 C -0.129 4.129 11 C -0.046 4.046 12 C -0.131 4.131 13 C 0.546 3.454 14 O -0.538 6.538 15 N -0.594 5.594 16 C 0.066 3.934 17 C 0.244 3.756 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.085 4.085 27 C -0.156 4.156 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.411 0.589 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.263 0.737 44 H 0.149 0.851 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.838 -0.438 5.508 33.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.132 4.132 3 C -0.179 4.179 4 C -0.042 4.042 5 C -0.240 4.240 6 C 0.335 3.665 7 O -0.399 6.399 8 N -0.312 5.312 9 C 0.061 3.939 10 C -0.149 4.149 11 C -0.066 4.066 12 C -0.135 4.135 13 C 0.333 3.667 14 O -0.416 6.416 15 N -0.325 5.325 16 C -0.077 4.077 17 C 0.125 3.875 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.104 4.104 27 C -0.177 4.177 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.247 0.753 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.166 0.834 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -31.896 -1.733 5.436 32.403 hybrid contribution 0.049 0.796 -0.947 1.238 sum -31.847 -0.938 4.488 32.176 Atomic orbital electron populations 1.20951 0.92423 1.03050 1.02532 1.23823 0.96606 0.98021 0.94703 1.21811 0.92686 0.98801 1.04595 1.22605 0.93414 0.98593 0.89548 1.22797 0.92364 0.99574 1.09228 1.18479 0.88439 0.83409 0.76187 1.90876 1.70163 1.30909 1.47988 1.43266 1.05444 1.09692 1.72750 1.17816 0.82271 0.97369 0.96489 1.21027 0.94486 0.99814 0.99600 1.21139 0.92643 0.96263 0.96532 1.20262 0.94512 0.97364 1.01374 1.18121 0.86128 0.84404 0.78041 1.90757 1.69566 1.31373 1.49913 1.48046 1.10743 1.05161 1.68570 1.22264 0.97695 0.88111 0.99660 1.19331 0.72559 0.98791 0.96790 1.21450 0.92161 1.50225 0.92835 0.92386 1.24936 0.96040 0.95102 0.97992 1.69937 0.99325 1.50104 1.33971 0.86488 0.77836 0.78028 0.85027 1.20640 1.21062 1.19881 1.21777 0.93945 0.97311 0.97320 1.20774 0.93926 1.01046 1.01934 0.91506 0.90975 0.90957 0.86539 0.86196 0.85108 0.85187 0.75297 0.84624 0.84648 0.93288 0.91002 0.90610 0.94835 0.93562 0.92708 0.83386 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.39 10.19 36.01 0.37 -0.03 16 2 C -0.11 -0.51 9.98 -35.99 -0.36 -0.87 16 3 C -0.16 -0.83 9.48 -38.02 -0.36 -1.19 16 4 C -0.02 -0.16 9.37 -37.41 -0.35 -0.51 16 5 C -0.22 -1.57 9.71 -37.46 -0.36 -1.93 16 6 C 0.54 5.80 7.46 -13.06 -0.10 5.70 16 7 O -0.52 -7.71 13.91 5.16 0.07 -7.64 16 8 N -0.67 -6.18 5.31 -11.18 -0.06 -6.24 16 9 C 0.15 1.93 6.27 -83.77 -0.53 1.40 16 10 C -0.13 -1.92 8.62 -39.45 -0.34 -2.26 16 11 C -0.05 -0.79 9.59 -39.23 -0.38 -1.16 16 12 C -0.13 -2.34 5.48 -104.95 -0.58 -2.91 16 13 C 0.55 12.33 7.44 -12.45 -0.09 12.24 16 14 O -0.54 -14.49 16.29 5.29 0.09 -14.40 16 15 N -0.59 -13.16 2.86 -184.18 -0.53 -13.68 16 16 C 0.07 1.07 8.79 59.84 0.53 1.60 16 17 C 0.24 6.56 5.21 -5.19 -0.03 6.53 16 18 C -0.53 -15.29 9.39 -34.44 -0.32 -15.61 16 19 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 22 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.08 -1.17 7.43 -39.23 -0.29 -1.46 16 27 C -0.16 -1.78 9.94 -39.45 -0.39 -2.18 16 28 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.12 0.49 8.05 -52.49 -0.42 0.06 16 32 H 0.12 0.46 8.06 -52.49 -0.42 0.03 16 33 H 0.13 1.07 7.52 -52.48 -0.39 0.67 16 34 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.41 2.20 8.79 -40.82 -0.36 1.84 16 36 H 0.14 2.02 6.41 -52.49 -0.34 1.68 16 37 H 0.14 2.37 7.94 -52.48 -0.42 1.95 16 38 H 0.05 0.66 7.39 -51.93 -0.38 0.28 16 39 H 0.07 1.19 8.10 -51.93 -0.42 0.76 16 40 H 0.08 1.05 4.75 -51.93 -0.25 0.80 16 41 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 42 H 0.05 1.40 7.37 -51.93 -0.38 1.02 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.15 1.79 4.72 -52.49 -0.25 1.55 16 45 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -37.16 386.16 -8.68 -45.85 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.11 Total: 0.29 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -3.68 Total: -0.95 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.15 Total: -46.11 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: 0.16 Total: -22.04 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.16 -8.68 -45.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493502992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.908 kcal (2) G-P(sol) polarization free energy of solvation -37.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds