Wall clock time and date at job start Tue Mar 31 2020 15:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33416 * 119.99742 * 2 1 4 4 C 1.46322 * 120.00118 * 180.02562 * 3 2 1 5 5 C 1.35207 * 120.00358 * 179.97438 * 4 3 2 6 6 C 1.46206 * 120.00473 * 179.97438 * 5 4 3 7 7 O 1.21732 * 119.99569 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00556 * 180.02562 * 6 5 4 9 9 C 1.39295 * 120.00031 * 185.19065 * 8 6 5 10 10 C 1.39169 * 119.92889 * 33.55873 * 9 8 6 11 11 C 1.37653 * 120.06712 * 179.72051 * 10 9 8 12 12 C 1.39759 * 119.93068 * 0.25572 * 11 10 9 13 13 C 1.47584 * 120.07375 * 180.02562 * 12 11 10 14 14 O 1.21589 * 119.99652 * 328.85593 * 13 12 11 15 15 N 1.34776 * 120.00238 * 148.85096 * 13 12 11 16 16 C 1.46493 * 119.99825 * 3.64165 * 15 13 12 17 17 C 1.46502 * 119.99777 * 183.63606 * 15 13 12 18 18 C 1.50703 * 109.46585 * 90.00503 * 17 15 13 19 19 H 1.07997 * 120.00555 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99435 * 179.97438 * 18 17 15 21 21 N 1.31518 * 120.00414 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99677 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47081 * 89.99928 * 22 20 18 24 24 H 1.48508 * 109.46894 * 209.99965 * 22 20 18 25 25 H 1.48498 * 109.46817 * 329.99595 * 22 20 18 26 26 C 1.39765 * 119.85993 * 359.97438 * 12 11 10 27 27 C 1.37647 * 119.92798 * 0.02562 * 26 12 11 28 28 H 1.09003 * 109.46632 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47626 * 300.00127 * 1 2 3 30 30 H 1.08998 * 109.47305 * 60.00577 * 1 2 3 31 31 H 1.08001 * 120.00032 * 179.97438 * 2 1 3 32 32 H 1.08001 * 120.00242 * 359.97438 * 3 2 1 33 33 H 1.08010 * 119.99885 * 359.97438 * 4 3 2 34 34 H 1.08001 * 120.00002 * 359.97438 * 5 4 3 35 35 H 0.96996 * 119.99259 * 5.18660 * 8 6 5 36 36 H 1.07990 * 119.96644 * 359.97438 * 10 9 8 37 37 H 1.08008 * 120.03349 * 180.26948 * 11 10 9 38 38 H 1.08999 * 109.47410 * 94.27468 * 16 15 13 39 39 H 1.09000 * 109.46950 * 214.27238 * 16 15 13 40 40 H 1.08997 * 109.47493 * 334.26848 * 16 15 13 41 41 H 1.08998 * 109.46644 * 210.00067 * 17 15 13 42 42 H 1.08999 * 109.47344 * 330.00292 * 17 15 13 43 43 H 0.97000 * 119.99835 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.03340 * 180.02562 * 26 12 11 45 45 H 1.07997 * 119.96421 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1741 1.1554 0.0000 4 6 3.6373 1.1555 -0.0006 5 6 4.3133 2.3265 -0.0011 6 6 5.7754 2.3266 -0.0011 7 8 6.3841 1.2724 -0.0001 8 7 6.4493 3.4938 -0.0011 9 6 7.8380 3.4963 -0.1102 10 6 8.4761 2.5236 -0.8741 11 6 9.8479 2.5268 -0.9886 12 6 10.6002 3.5049 -0.3324 13 6 12.0710 3.5117 -0.4534 14 8 12.6739 2.4656 -0.5976 15 7 12.7459 4.6772 -0.4042 16 6 12.0284 5.9290 -0.1509 17 6 14.1972 4.6922 -0.6039 18 6 14.5007 4.8688 -2.0695 19 1 13.6934 4.9603 -2.7810 20 6 15.8091 4.9136 -2.5020 21 7 16.7923 4.8028 -1.6355 22 14 16.1853 5.1318 -4.3187 23 1 16.2931 6.5795 -4.6315 24 1 17.4687 4.4584 -4.6428 25 1 15.0934 4.5309 -5.1259 26 6 9.9565 4.4775 0.4379 27 6 8.5845 4.4689 0.5484 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 2.0471 -0.9353 0.0004 32 1 1.6341 2.0908 -0.0004 33 1 4.1774 0.2202 -0.0006 34 1 3.7733 3.2618 -0.0015 35 1 5.9672 4.3320 0.0749 36 1 7.8943 1.7681 -1.3808 37 1 10.3423 1.7743 -1.5851 38 1 12.0564 6.1546 0.9151 39 1 12.5026 6.7383 -0.7061 40 1 10.9923 5.8256 -0.4734 41 1 14.6329 5.5174 -0.0407 42 1 14.6217 3.7505 -0.2559 43 1 17.7128 4.8347 -1.9398 44 1 10.5350 5.2349 0.9458 45 1 8.0865 5.2203 1.1431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493502992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:23 Heat of formation + Delta-G solvation = -17.545533 kcal Electronic energy + Delta-G solvation = -25838.230122 eV Core-core repulsion = 22014.208997 eV Total energy + Delta-G solvation = -3824.021124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.80782 -40.91911 -39.06219 -36.80570 -36.73867 -35.92056 -34.76316 -33.34819 -32.18973 -31.34207 -29.49581 -28.24519 -27.61897 -25.68257 -24.56578 -23.71686 -22.75087 -20.88853 -20.70443 -20.55616 -18.75495 -18.67794 -18.41710 -18.02670 -17.30321 -16.59341 -16.33157 -16.01153 -15.96408 -15.73001 -15.50896 -15.12671 -14.79805 -14.50918 -14.34435 -14.28526 -14.12580 -13.92168 -13.76407 -13.61551 -13.37418 -13.11607 -12.97589 -12.79444 -12.65569 -12.54998 -12.26338 -12.17160 -11.95920 -11.79997 -11.75625 -11.50544 -11.08517 -10.73891 -10.65648 -9.97994 -9.52231 -9.37372 -9.07658 -8.24317 -6.39736 -0.40706 -0.00860 0.35347 1.34978 1.38670 1.48755 1.51398 1.85546 2.03527 2.25840 2.39642 2.42983 2.83790 3.04989 3.59902 3.66964 3.83942 3.93172 4.01239 4.17284 4.24673 4.30707 4.38303 4.42604 4.51151 4.55705 4.64369 4.76805 4.85268 4.89294 4.93381 4.98168 4.99353 5.09983 5.14828 5.21337 5.25690 5.32761 5.41074 5.43972 5.53158 5.64874 5.79936 5.81257 5.90348 6.03292 6.41093 6.65660 6.71289 7.08706 7.23556 7.39487 8.82862 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029188 B = 0.001827 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.065437 B =15325.505208 C =15659.538700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.110 4.110 3 C -0.169 4.169 4 C -0.021 4.021 5 C -0.221 4.221 6 C 0.539 3.461 7 O -0.573 6.573 8 N -0.651 5.651 9 C 0.168 3.832 10 C -0.139 4.139 11 C -0.063 4.063 12 C -0.158 4.158 13 C 0.537 3.463 14 O -0.602 6.602 15 N -0.599 5.599 16 C 0.059 3.941 17 C 0.258 3.742 18 C -0.548 4.548 19 H 0.052 0.948 20 C 0.009 3.991 21 N -0.927 5.927 22 Si 0.970 3.030 23 H -0.259 1.259 24 H -0.279 1.279 25 H -0.276 1.276 26 C -0.074 4.074 27 C -0.134 4.134 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.110 0.890 34 H 0.170 0.830 35 H 0.435 0.565 36 H 0.128 0.872 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.032 0.968 42 H -0.002 1.002 43 H 0.268 0.732 44 H 0.172 0.828 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.783 2.499 5.852 37.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.128 4.128 3 C -0.187 4.187 4 C -0.041 4.041 5 C -0.241 4.241 6 C 0.332 3.668 7 O -0.453 6.453 8 N -0.296 5.296 9 C 0.072 3.928 10 C -0.159 4.159 11 C -0.083 4.083 12 C -0.162 4.162 13 C 0.327 3.673 14 O -0.485 6.485 15 N -0.329 5.329 16 C -0.082 4.082 17 C 0.137 3.863 18 C -0.587 4.587 19 H 0.070 0.930 20 C -0.190 4.190 21 N -0.566 5.566 22 Si 0.794 3.206 23 H -0.184 1.184 24 H -0.205 1.205 25 H -0.201 1.201 26 C -0.093 4.093 27 C -0.154 4.154 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.159 0.841 33 H 0.128 0.872 34 H 0.187 0.813 35 H 0.276 0.724 36 H 0.146 0.854 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.050 0.950 42 H 0.016 0.984 43 H 0.077 0.923 44 H 0.189 0.811 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -35.909 1.291 5.798 36.397 hybrid contribution 1.108 -0.210 -0.988 1.499 sum -34.802 1.081 4.810 35.149 Atomic orbital electron populations 1.20994 0.91062 1.03661 1.03224 1.24064 0.97704 0.97884 0.93179 1.21872 0.91438 0.99898 1.05513 1.22700 0.94640 0.97984 0.88769 1.22852 0.90085 1.01186 1.10000 1.19138 0.89887 0.82847 0.74931 1.90870 1.71361 1.32779 1.50312 1.43179 1.04060 1.10669 1.71715 1.17959 0.83951 0.96209 0.94700 1.20957 0.93359 1.00863 1.00702 1.20981 0.93719 0.96211 0.97369 1.19894 0.91242 1.00184 1.04882 1.18935 0.88247 0.83479 0.76597 1.90700 1.71347 1.33588 1.52889 1.48046 1.09229 1.07415 1.68204 1.22654 0.98456 0.85049 1.02055 1.18824 0.75727 0.95969 0.95803 1.21704 0.92494 1.50763 0.93715 0.93001 1.25867 0.95736 0.94399 1.02999 1.70052 0.99825 1.50488 1.36247 0.85390 0.77430 0.79022 0.78799 1.18393 1.20476 1.20081 1.21991 0.95224 0.96184 0.95857 1.21215 0.92647 1.00954 1.00553 0.91058 0.90137 0.90210 0.86925 0.84143 0.87243 0.81272 0.72437 0.85409 0.87221 0.89695 0.91334 0.87665 0.95044 0.98394 0.92286 0.81091 0.80084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.48 10.19 71.24 0.73 0.25 16 2 C -0.11 -0.80 9.98 24.60 0.25 -0.56 16 3 C -0.17 -1.35 9.48 23.28 0.22 -1.13 16 4 C -0.02 -0.27 9.37 23.68 0.22 -0.05 16 5 C -0.22 -2.57 9.71 23.64 0.23 -2.34 16 6 C 0.54 10.50 7.46 86.31 0.64 11.15 16 7 O -0.57 -17.04 13.91 -4.45 -0.06 -17.10 16 8 N -0.65 -9.75 5.31 -307.47 -1.63 -11.38 16 9 C 0.17 3.71 6.27 38.41 0.24 3.95 16 10 C -0.14 -4.15 8.62 22.36 0.19 -3.95 16 11 C -0.06 -2.26 9.59 22.50 0.22 -2.05 16 12 C -0.16 -5.72 5.48 -20.07 -0.11 -5.83 16 13 C 0.54 25.58 7.44 86.71 0.65 26.22 16 14 O -0.60 -35.27 16.29 -4.00 -0.07 -35.34 16 15 N -0.60 -27.30 2.86 -854.88 -2.44 -29.74 16 16 C 0.06 1.80 8.79 127.77 1.12 2.92 16 17 C 0.26 14.57 5.21 85.63 0.45 15.01 16 18 C -0.55 -32.88 9.39 25.60 0.24 -32.64 16 19 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 20 C 0.01 0.54 5.46 84.65 0.46 1.01 16 21 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 22 Si 0.97 46.08 29.54 68.60 2.03 48.11 16 23 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 C -0.07 -1.83 7.43 22.50 0.17 -1.66 16 27 C -0.13 -2.42 9.94 22.36 0.22 -2.20 16 28 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.11 0.86 8.05 -2.91 -0.02 0.84 16 32 H 0.14 0.55 8.06 -2.91 -0.02 0.53 16 33 H 0.11 1.84 7.52 -2.91 -0.02 1.82 16 34 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 35 H 0.43 2.37 8.79 -92.71 -0.82 1.55 16 36 H 0.13 4.00 6.41 -2.92 -0.02 3.98 16 37 H 0.11 4.34 7.94 -2.91 -0.02 4.32 16 38 H 0.08 2.01 7.39 -2.39 -0.02 1.99 16 39 H 0.07 2.16 8.10 -2.39 -0.02 2.14 16 40 H 0.11 2.60 4.75 -2.39 -0.01 2.59 16 41 H 0.03 1.76 8.07 -2.39 -0.02 1.74 16 42 H 0.00 -0.14 7.37 -2.39 -0.02 -0.15 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.17 3.41 4.72 -2.91 -0.01 3.39 16 45 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -89.05 386.16 4.44 -84.61 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.20 Total: 9.70 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 6.13 Total: 8.10 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -3.79 Total: -98.09 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -0.13 Total: -52.44 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -89.05 4.44 -84.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493502992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.068 kcal (2) G-P(sol) polarization free energy of solvation -89.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds