Wall clock time and date at job start Tue Mar 31 2020 15:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47086 * 2 1 4 4 C 1.52994 * 109.47100 * 239.99511 * 2 1 3 5 5 C 1.50702 * 109.47272 * 60.00681 * 4 2 1 6 6 H 1.07998 * 119.99416 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00293 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00006 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00138 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47166 * 59.99897 * 9 7 5 11 11 H 1.48499 * 109.47098 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46978 * 299.99468 * 9 7 5 13 13 C 1.53008 * 109.46761 * 119.99943 * 2 1 3 14 14 N 1.46500 * 109.46855 * 299.99793 * 13 2 1 15 15 C 1.34777 * 119.99768 * 180.02562 * 14 13 2 16 16 O 1.21643 * 119.99826 * 359.97438 * 15 14 13 17 17 C 1.47148 * 120.00023 * 180.02562 * 15 14 13 18 18 C 1.39034 * 121.09664 * 359.97438 * 17 15 14 19 19 N 1.32076 * 121.40671 * 180.02562 * 18 17 15 20 20 C 1.31830 * 123.59689 * 0.02562 * 19 18 17 21 21 O 1.35259 * 119.61091 * 180.02562 * 20 19 18 22 22 C 1.41183 * 120.77855 * 0.02562 * 20 19 18 23 23 C 1.40128 * 122.11092 * 179.97438 * 22 20 19 24 24 C 1.36355 * 119.50668 * 179.97438 * 23 22 20 25 25 C 1.39182 * 121.05632 * 0.02562 * 24 23 22 26 26 C 1.36514 * 120.89288 * 359.97438 * 25 24 23 27 27 C 1.39620 * 119.43579 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47479 * 300.00236 * 1 2 3 29 29 H 1.09009 * 109.46706 * 60.00406 * 1 2 3 30 30 H 1.09003 * 109.47480 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47027 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47004 * 299.99385 * 3 2 1 33 33 H 1.08997 * 109.47609 * 59.99844 * 3 2 1 34 34 H 1.09010 * 109.47159 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47658 * 299.99862 * 4 2 1 36 36 H 0.97003 * 120.00113 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.46692 * 179.97438 * 13 2 1 38 38 H 1.09003 * 109.47068 * 59.99816 * 13 2 1 39 39 H 0.97002 * 120.00374 * 0.02562 * 14 13 2 40 40 H 1.07994 * 119.30362 * 0.05083 * 18 17 15 41 41 H 0.96695 * 113.99849 * 89.99990 * 21 20 19 42 42 H 1.08005 * 120.24630 * 0.24296 * 23 22 20 43 43 H 1.07999 * 119.47184 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.55205 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.28307 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6264 -1.5517 -3.8525 9 14 1.2473 0.3978 -5.2572 10 1 1.7424 1.7979 -5.2577 11 1 1.7424 -0.3023 -6.4696 12 1 -0.2376 0.3978 -5.2567 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6696 16 8 2.5768 -1.4798 3.7812 17 6 1.3866 0.2027 4.8710 18 6 0.5856 1.3346 4.7699 19 7 0.1420 1.9620 5.8441 20 6 0.4133 1.5799 7.0763 21 8 -0.0845 2.2829 8.1190 22 6 1.2175 0.4454 7.3203 23 6 1.5239 0.0147 8.6181 24 6 2.3055 -1.0889 8.7925 25 6 2.8047 -1.7948 7.7018 26 6 2.5248 -1.4016 6.4248 27 6 1.7264 -0.2761 6.2128 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1301 -0.7217 -1.2489 35 1 1.6767 -1.7490 -1.2491 36 1 2.8608 -1.8832 -4.7335 37 1 3.1299 -0.7217 1.2491 38 1 1.6765 -1.7490 1.2493 39 1 0.9936 0.7579 2.3564 40 1 0.3201 1.7086 3.7922 41 1 -0.9500 1.9766 8.4225 42 1 1.1403 0.5504 9.4738 43 1 2.5416 -1.4200 9.7929 44 1 3.4211 -2.6659 7.8680 45 1 2.9171 -1.9570 5.5856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564027691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:00 Heat of formation + Delta-G solvation = -31.221944 kcal Electronic energy + Delta-G solvation = -27199.602230 eV Core-core repulsion = 23374.988052 eV Total energy + Delta-G solvation = -3824.614178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 5.03 seconds Orbital eigenvalues (eV) -41.34173 -39.58012 -38.27999 -37.23465 -36.94157 -33.78843 -32.40976 -32.09276 -31.50585 -29.84390 -27.16182 -26.55339 -26.36058 -24.79895 -23.93873 -23.22163 -22.40186 -20.84025 -19.37148 -18.59552 -18.04999 -17.69375 -17.20959 -16.35089 -16.05638 -15.59993 -15.32544 -15.24224 -14.71422 -14.52811 -14.47624 -13.95977 -13.65150 -13.43235 -13.29940 -13.10544 -12.78144 -12.42694 -12.29239 -12.27371 -12.19325 -12.07494 -11.71688 -11.20665 -11.03048 -10.89111 -10.66166 -10.45474 -10.29739 -10.21834 -10.12630 -9.91847 -9.58091 -9.46521 -9.20497 -8.96751 -8.91170 -8.37556 -8.31507 -6.01780 -4.03278 -0.31130 0.53272 1.35448 2.41988 3.06296 3.09255 3.18637 3.31076 3.36612 3.38028 3.73349 4.10649 4.24952 4.37031 4.43816 4.52647 4.70842 4.79309 4.93059 5.08535 5.25466 5.33648 5.33945 5.46950 5.56969 5.60181 5.69166 5.78804 5.95970 6.11602 6.12194 6.15343 6.18909 6.24319 6.33704 6.44396 6.57569 6.59348 6.69983 6.98727 7.01612 7.03817 7.07998 7.47729 7.56623 7.61380 7.72841 7.96453 8.23374 8.38291 9.01173 9.60011 11.09601 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.002413 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.673507 B =11602.659148 C =12519.420597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.711 5.711 15 C 0.562 3.438 16 O -0.537 6.537 17 C -0.179 4.179 18 C 0.145 3.855 19 N -0.515 5.515 20 C 0.380 3.620 21 O -0.475 6.475 22 C -0.129 4.129 23 C -0.084 4.084 24 C -0.120 4.120 25 C -0.094 4.094 26 C -0.110 4.110 27 C 0.023 3.977 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.398 0.602 40 H 0.163 0.837 41 H 0.407 0.593 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 3.375 25.889 26.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.362 5.362 15 C 0.349 3.651 16 O -0.416 6.416 17 C -0.184 4.184 18 C 0.000 4.000 19 N -0.234 5.234 20 C 0.187 3.813 21 O -0.283 6.283 22 C -0.133 4.133 23 C -0.104 4.104 24 C -0.138 4.138 25 C -0.114 4.114 26 C -0.127 4.127 27 C 0.018 3.982 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.234 0.766 40 H 0.180 0.820 41 H 0.267 0.733 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.932 3.584 25.546 26.094 hybrid contribution -0.533 -0.003 -0.770 0.936 sum -4.465 3.581 24.775 25.428 Atomic orbital electron populations 1.21779 0.95203 1.01267 1.00298 1.20925 0.95526 0.95906 0.94989 1.21778 1.00658 0.95822 1.00305 1.19086 0.96392 0.95223 0.89387 1.21133 1.31301 1.12110 0.90499 0.92289 1.25008 0.95296 0.95066 0.99087 1.69952 1.36859 1.22984 1.23588 0.86707 0.79150 0.79775 0.82649 1.20316 1.21402 1.20317 1.21721 0.99171 0.96118 0.82466 1.46152 1.52607 1.31797 1.05692 1.17668 0.80631 0.84020 0.82803 1.90638 1.38585 1.26290 1.86130 1.21979 1.03426 0.99449 0.93545 1.22483 0.91337 0.89977 0.96250 1.66575 1.25625 1.32572 0.98606 1.19402 0.90465 0.85672 0.85724 1.84620 1.39830 1.58653 1.45245 1.18902 1.03004 0.96508 0.94891 1.20883 0.97788 0.96472 0.95254 1.21019 0.97740 0.95540 0.99499 1.21239 0.98268 0.99439 0.92412 1.21878 0.96281 0.95343 0.99213 1.18804 0.94875 0.94490 0.90079 0.95319 0.91283 0.93254 0.93248 0.91275 0.95316 0.96288 0.96291 0.92960 0.91388 0.91389 0.76572 0.81974 0.73341 0.84553 0.85349 0.85126 0.81296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.16 0.30 -1.87 16 2 C -0.07 -1.33 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.18 8.05 37.15 0.30 -1.88 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.35 7.65 -34.44 -0.26 -13.62 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.13 2.15 4.56 -4.04 -0.02 2.13 16 14 N -0.71 -9.97 4.91 -61.47 -0.30 -10.27 16 15 C 0.56 8.32 7.76 -12.64 -0.10 8.22 16 16 O -0.54 -9.34 13.72 5.24 0.07 -9.27 16 17 C -0.18 -2.30 6.06 -102.68 -0.62 -2.92 16 18 C 0.14 1.66 10.70 -17.15 -0.18 1.47 16 19 N -0.52 -6.13 10.25 -12.66 -0.13 -6.26 16 20 C 0.38 4.00 7.79 -16.44 -0.13 3.87 16 21 O -0.48 -3.72 12.80 -17.47 -0.22 -3.94 16 22 C -0.13 -1.38 5.75 -106.78 -0.61 -1.99 16 23 C -0.08 -0.69 9.58 -39.55 -0.38 -1.07 16 24 C -0.12 -0.91 9.95 -39.91 -0.40 -1.31 16 25 C -0.09 -0.85 9.96 -39.85 -0.40 -1.25 16 26 C -0.11 -1.31 9.32 -39.69 -0.37 -1.68 16 27 C 0.02 0.28 5.90 -104.78 -0.62 -0.34 16 28 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 29 H 0.07 1.26 6.62 -51.92 -0.34 0.92 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 33 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 34 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.40 4.70 4.25 -40.82 -0.17 4.53 16 40 H 0.16 1.49 6.42 -52.49 -0.34 1.15 16 41 H 0.41 1.04 9.06 45.56 0.41 1.45 16 42 H 0.14 0.77 7.66 -52.48 -0.40 0.37 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.17 2.30 5.23 -52.48 -0.27 2.02 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -32.68 365.48 -8.13 -40.81 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.99 Total: 4.24 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -3.78 Total: -11.42 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.30 Total: -41.92 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.15 Total: -13.21 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.68 -8.13 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564027691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.588 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.03 seconds