Wall clock time and date at job start Tue Mar 31 2020 15:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47086 * 2 1 4 4 C 1.52994 * 109.47100 * 239.99511 * 2 1 3 5 5 C 1.50702 * 109.47272 * 60.00681 * 4 2 1 6 6 H 1.07998 * 119.99416 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00293 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00006 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00138 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47166 * 59.99897 * 9 7 5 11 11 H 1.48499 * 109.47098 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46978 * 299.99468 * 9 7 5 13 13 C 1.53008 * 109.46761 * 119.99943 * 2 1 3 14 14 N 1.46500 * 109.46855 * 299.99793 * 13 2 1 15 15 C 1.34777 * 119.99768 * 180.02562 * 14 13 2 16 16 O 1.21643 * 119.99826 * 359.97438 * 15 14 13 17 17 C 1.47148 * 120.00023 * 180.02562 * 15 14 13 18 18 C 1.39034 * 121.09664 * 359.97438 * 17 15 14 19 19 N 1.32076 * 121.40671 * 180.02562 * 18 17 15 20 20 C 1.31830 * 123.59689 * 0.02562 * 19 18 17 21 21 O 1.35259 * 119.61091 * 180.02562 * 20 19 18 22 22 C 1.41183 * 120.77855 * 0.02562 * 20 19 18 23 23 C 1.40128 * 122.11092 * 179.97438 * 22 20 19 24 24 C 1.36355 * 119.50668 * 179.97438 * 23 22 20 25 25 C 1.39182 * 121.05632 * 0.02562 * 24 23 22 26 26 C 1.36514 * 120.89288 * 359.97438 * 25 24 23 27 27 C 1.39620 * 119.43579 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47479 * 300.00236 * 1 2 3 29 29 H 1.09009 * 109.46706 * 60.00406 * 1 2 3 30 30 H 1.09003 * 109.47480 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47027 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47004 * 299.99385 * 3 2 1 33 33 H 1.08997 * 109.47609 * 59.99844 * 3 2 1 34 34 H 1.09010 * 109.47159 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47658 * 299.99862 * 4 2 1 36 36 H 0.97003 * 120.00113 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.46692 * 179.97438 * 13 2 1 38 38 H 1.09003 * 109.47068 * 59.99816 * 13 2 1 39 39 H 0.97002 * 120.00374 * 0.02562 * 14 13 2 40 40 H 1.07994 * 119.30362 * 0.05083 * 18 17 15 41 41 H 0.96695 * 113.99849 * 89.99990 * 21 20 19 42 42 H 1.08005 * 120.24630 * 0.24296 * 23 22 20 43 43 H 1.07999 * 119.47184 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.55205 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.28307 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6264 -1.5517 -3.8525 9 14 1.2473 0.3978 -5.2572 10 1 1.7424 1.7979 -5.2577 11 1 1.7424 -0.3023 -6.4696 12 1 -0.2376 0.3978 -5.2567 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6696 16 8 2.5768 -1.4798 3.7812 17 6 1.3866 0.2027 4.8710 18 6 0.5856 1.3346 4.7699 19 7 0.1420 1.9620 5.8441 20 6 0.4133 1.5799 7.0763 21 8 -0.0845 2.2829 8.1190 22 6 1.2175 0.4454 7.3203 23 6 1.5239 0.0147 8.6181 24 6 2.3055 -1.0889 8.7925 25 6 2.8047 -1.7948 7.7018 26 6 2.5248 -1.4016 6.4248 27 6 1.7264 -0.2761 6.2128 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1301 -0.7217 -1.2489 35 1 1.6767 -1.7490 -1.2491 36 1 2.8608 -1.8832 -4.7335 37 1 3.1299 -0.7217 1.2491 38 1 1.6765 -1.7490 1.2493 39 1 0.9936 0.7579 2.3564 40 1 0.3201 1.7086 3.7922 41 1 -0.9500 1.9766 8.4225 42 1 1.1403 0.5504 9.4738 43 1 2.5416 -1.4200 9.7929 44 1 3.4211 -2.6659 7.8680 45 1 2.9171 -1.9570 5.5856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564027691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:58 Heat of formation + Delta-G solvation = -54.877119 kcal Electronic energy + Delta-G solvation = -27200.627995 eV Core-core repulsion = 23374.988052 eV Total energy + Delta-G solvation = -3825.639943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -42.16360 -40.71894 -39.04044 -38.57699 -37.77413 -35.32347 -34.03500 -33.09145 -32.24899 -30.73570 -29.05049 -27.96116 -27.66002 -25.81778 -24.79393 -24.68004 -23.46065 -21.92746 -20.23653 -19.86065 -18.85034 -18.66660 -18.37787 -18.09981 -16.91643 -16.77857 -16.44785 -16.38652 -16.06023 -15.69105 -15.37066 -15.15604 -14.86546 -14.62501 -14.45439 -14.21523 -14.02596 -13.92043 -13.74541 -13.16647 -13.03241 -12.91302 -12.84160 -12.75227 -12.58765 -12.46227 -12.32265 -12.22380 -12.00416 -11.53757 -11.17558 -11.02623 -10.94589 -10.85303 -10.49630 -10.47232 -10.22545 -10.15238 -9.11586 -8.13096 -6.20662 -1.11225 -0.22348 0.58467 1.43282 1.45092 1.52195 1.56082 2.03421 2.14026 2.38134 2.45419 2.92387 3.21453 3.30998 3.45492 3.59267 3.79053 3.89482 3.98925 4.08068 4.10372 4.21616 4.27579 4.38521 4.51112 4.61921 4.68568 4.71782 4.79430 4.93475 4.96004 5.01787 5.12920 5.13218 5.27453 5.33609 5.41670 5.44194 5.51382 5.51797 5.54129 5.57818 5.80760 5.84282 5.90809 6.30789 6.44148 6.49086 6.71381 6.94289 7.11731 7.46999 8.99190 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.002413 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.673507 B =11602.659148 C =12519.420597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.124 4.124 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.267 1.267 11 H -0.292 1.292 12 H -0.267 1.267 13 C 0.142 3.858 14 N -0.701 5.701 15 C 0.564 3.436 16 O -0.571 6.571 17 C -0.208 4.208 18 C 0.158 3.842 19 N -0.539 5.539 20 C 0.397 3.603 21 O -0.474 6.474 22 C -0.146 4.146 23 C -0.073 4.073 24 C -0.120 4.120 25 C -0.082 4.082 26 C -0.147 4.147 27 C 0.006 3.994 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.068 0.932 34 H -0.013 1.013 35 H -0.012 1.012 36 H 0.259 0.741 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.411 0.589 40 H 0.183 0.817 41 H 0.432 0.568 42 H 0.169 0.831 43 H 0.166 0.834 44 H 0.151 0.849 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 5.634 28.845 30.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.181 4.181 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.218 1.218 12 H -0.191 1.191 13 C 0.018 3.982 14 N -0.353 5.353 15 C 0.352 3.648 16 O -0.453 6.453 17 C -0.213 4.213 18 C 0.013 3.987 19 N -0.259 5.259 20 C 0.205 3.795 21 O -0.286 6.286 22 C -0.149 4.149 23 C -0.092 4.092 24 C -0.137 4.137 25 C -0.101 4.101 26 C -0.165 4.165 27 C 0.001 3.999 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.005 0.995 35 H 0.006 0.994 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.250 0.750 40 H 0.200 0.800 41 H 0.296 0.704 42 H 0.186 0.814 43 H 0.183 0.817 44 H 0.168 0.832 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.735 5.875 28.538 29.696 hybrid contribution 0.018 -0.724 -1.457 1.628 sum -5.717 5.151 27.080 28.153 Atomic orbital electron populations 1.21719 0.93541 1.01119 1.01712 1.20712 0.96740 0.96262 0.92754 1.21720 1.00025 0.94684 1.01697 1.18968 0.94350 0.94253 0.92191 1.21561 1.30425 1.12091 0.91056 0.90920 1.25933 0.95700 0.95862 1.02681 1.70113 1.38775 1.24953 1.24123 0.85615 0.78971 0.78750 0.78400 1.19205 1.21779 1.19143 1.21295 0.98090 0.95521 0.83255 1.45879 1.52804 1.32011 1.04625 1.18012 0.79848 0.83538 0.83367 1.90635 1.40125 1.27900 1.86643 1.21746 1.05934 1.00833 0.92807 1.22745 0.89832 0.88908 0.97193 1.66691 1.26801 1.33263 0.99136 1.19565 0.89141 0.84811 0.85968 1.84565 1.41591 1.58317 1.44157 1.19082 1.03598 0.96792 0.95449 1.21305 0.96624 0.96259 0.95019 1.21414 0.96846 0.94925 1.00539 1.21565 0.97118 0.99629 0.91746 1.21730 0.98504 0.96404 0.99843 1.18996 0.95280 0.94971 0.90607 0.91238 0.92418 0.94262 0.94346 0.92394 0.91292 0.99474 0.99410 0.93198 0.93077 0.92966 0.75028 0.80010 0.70380 0.81391 0.81682 0.83155 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 2 C -0.06 -2.38 0.54 -52.18 -0.03 -2.41 16 3 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 4 C 0.04 2.01 4.04 29.85 0.12 2.13 16 5 C -0.51 -27.27 7.65 25.60 0.20 -27.07 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.58 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -56.93 13.29 21.45 0.28 -56.65 16 9 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.14 4.98 4.56 86.38 0.39 5.38 16 14 N -0.70 -19.57 4.91 -466.62 -2.29 -21.86 16 15 C 0.56 17.19 7.76 86.58 0.67 17.87 16 16 O -0.57 -21.23 13.72 -4.17 -0.06 -21.29 16 17 C -0.21 -5.34 6.06 -18.60 -0.11 -5.45 16 18 C 0.16 3.39 10.70 84.85 0.91 4.30 16 19 N -0.54 -11.68 10.25 -307.28 -3.15 -14.82 16 20 C 0.40 7.35 7.79 85.42 0.67 8.01 16 21 O -0.47 -5.67 12.80 -85.43 -1.09 -6.76 16 22 C -0.15 -2.80 5.75 -21.26 -0.12 -2.92 16 23 C -0.07 -0.93 9.58 22.29 0.21 -0.71 16 24 C -0.12 -1.41 9.95 22.06 0.22 -1.19 16 25 C -0.08 -1.36 9.96 22.09 0.22 -1.14 16 26 C -0.15 -3.60 9.32 22.20 0.21 -3.39 16 27 C 0.01 0.16 5.90 -19.96 -0.12 0.04 16 28 H 0.07 1.70 6.86 -2.39 -0.02 1.69 16 29 H 0.06 2.03 6.62 -2.38 -0.02 2.02 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 2.05 6.62 -2.39 -0.02 2.04 16 33 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 34 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 35 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.41 8.96 4.25 -92.71 -0.39 8.56 16 40 H 0.18 2.89 6.42 -2.91 -0.02 2.87 16 41 H 0.43 0.45 9.06 -74.06 -0.67 -0.22 16 42 H 0.17 1.04 7.66 -2.91 -0.02 1.01 16 43 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 44 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 45 H 0.14 4.23 5.23 -2.91 -0.02 4.21 16 Total: -1.00 -75.13 365.48 0.76 -74.38 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -0.02 Total: 14.90 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 5.06 Total: -13.38 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -5.16 Total: -93.33 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -1.15 Total: -28.05 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -75.13 0.76 -74.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564027691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.498 kcal (2) G-P(sol) polarization free energy of solvation -75.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds