Wall clock time and date at job start Tue Mar 31 2020 15:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46775 * 2 1 4 4 C 1.50705 * 109.46871 * 180.02562 * 3 2 1 5 5 C 1.34177 * 126.10935 * 125.00071 * 4 3 2 6 6 O 1.35018 * 107.25392 * 179.76204 * 5 4 3 7 7 C 1.34199 * 107.74209 * 0.41954 * 6 5 4 8 8 N 1.38646 * 125.70325 * 179.83757 * 7 6 5 9 9 C 1.34782 * 119.99750 * 359.69387 * 8 7 6 10 10 O 1.21273 * 120.00164 * 0.27555 * 9 8 7 11 11 C 1.50701 * 119.99823 * 179.97438 * 9 8 7 12 12 C 1.53002 * 109.46995 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46901 * 55.00194 * 12 11 9 14 14 C 1.50703 * 109.47040 * 295.00409 * 12 11 9 15 15 H 1.08005 * 119.99987 * 325.83233 * 14 12 11 16 16 C 1.37873 * 119.99980 * 145.84100 * 14 12 11 17 17 N 1.31515 * 119.99812 * 6.11078 * 16 14 12 18 18 Si 1.86801 * 120.00160 * 186.11627 * 16 14 12 19 19 H 1.48502 * 109.47188 * 59.99796 * 18 16 14 20 20 H 1.48498 * 109.47107 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46722 * 299.99810 * 18 16 14 22 22 C 1.50701 * 109.46890 * 175.00204 * 12 11 9 23 23 C 1.38234 * 120.00064 * 63.47006 * 22 12 11 24 24 C 1.38232 * 120.00078 * 179.78437 * 23 22 12 25 25 C 1.38238 * 119.99970 * 0.44134 * 24 23 22 26 26 C 1.38238 * 119.99828 * 359.81164 * 25 24 23 27 27 C 1.38228 * 120.00036 * 243.73662 * 22 12 11 28 28 N 1.30956 * 108.59944 * 359.57624 * 7 6 5 29 29 H 1.09002 * 109.46984 * 299.99764 * 1 2 3 30 30 H 1.09000 * 109.47461 * 59.99638 * 1 2 3 31 31 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47160 * 240.00471 * 2 1 3 33 33 H 1.08993 * 109.47170 * 119.99761 * 2 1 3 34 34 H 1.09002 * 109.47172 * 60.00351 * 3 2 1 35 35 H 1.08991 * 109.47531 * 300.00094 * 3 2 1 36 36 H 1.08002 * 126.37438 * 0.02562 * 5 4 3 37 37 H 0.96998 * 120.00179 * 179.68839 * 8 7 6 38 38 H 1.08999 * 109.47548 * 300.00523 * 11 9 8 39 39 H 1.09010 * 109.46841 * 60.00317 * 11 9 8 40 40 H 0.97005 * 120.00042 * 180.02562 * 17 16 14 41 41 H 1.08007 * 119.99688 * 359.97438 * 23 22 12 42 42 H 1.08000 * 120.00072 * 180.27054 * 24 23 22 43 43 H 1.07996 * 120.00001 * 179.83350 * 25 24 23 44 44 H 1.07993 * 119.99955 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.00063 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3374 2.0646 -0.8888 6 8 5.6152 1.8186 -0.5289 7 6 5.5897 1.0438 0.5665 8 7 6.6999 0.5667 1.2462 9 6 7.9387 0.8710 0.8109 10 8 8.0822 1.5662 -0.1724 11 6 9.1455 0.3529 1.5500 12 6 10.4179 0.8394 0.8533 13 1 10.3932 1.9259 0.7690 14 6 10.5012 0.2305 -0.5227 15 1 10.1279 -0.7682 -0.6949 16 6 11.0543 0.9484 -1.5618 17 7 11.6171 2.1141 -1.3294 18 14 11.0040 0.2654 -3.2998 19 1 9.5915 0.0666 -3.7128 20 1 11.6604 1.2220 -4.2267 21 1 11.7196 -1.0351 -3.3413 22 6 11.6217 0.4253 1.6597 23 6 11.9044 -0.9157 1.8409 24 6 13.0111 -1.2955 2.5768 25 6 13.8302 -0.3344 3.1394 26 6 13.5446 1.0066 2.9626 27 6 12.4402 1.3863 2.2229 28 7 4.3408 0.8182 0.8895 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9565 -0.8899 36 1 4.0119 2.6558 -1.7321 37 1 6.5852 0.0141 2.0350 38 1 9.1290 0.7210 2.5758 39 1 9.1283 -0.7370 1.5548 40 1 12.0059 2.6193 -2.0605 41 1 11.2621 -1.6666 1.4047 42 1 13.2344 -2.3431 2.7146 43 1 14.6933 -0.6311 3.7166 44 1 14.1841 1.7574 3.4024 45 1 12.2172 2.4340 2.0847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580782283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:30 Heat of formation + Delta-G solvation = 3.054662 kcal Electronic energy + Delta-G solvation = -27057.280213 eV Core-core repulsion = 23234.152380 eV Total energy + Delta-G solvation = -3823.127833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.08842 -39.45194 -38.28659 -35.96383 -34.94308 -34.08426 -33.44220 -31.56756 -30.06505 -29.98650 -28.84862 -26.68188 -25.73895 -23.38770 -22.37847 -22.08760 -21.61029 -21.13492 -19.96585 -19.26073 -17.86566 -16.80301 -16.64575 -16.40319 -16.07575 -15.74468 -15.18147 -14.61600 -14.49224 -14.43871 -14.13797 -13.90977 -13.47193 -13.36561 -13.26917 -12.67759 -12.47085 -12.42877 -12.10838 -12.02769 -11.68804 -11.58058 -11.47872 -11.18621 -10.93959 -10.87088 -10.81152 -10.65110 -10.33300 -10.30803 -10.14025 -10.13244 -9.59531 -9.41636 -9.10651 -8.42528 -8.08283 -8.01893 -7.67054 -6.00865 -4.02034 1.67457 2.23592 2.24967 2.36231 2.62293 3.34715 3.37684 3.39603 3.43461 3.43987 4.46564 4.53492 4.69540 4.72302 4.91679 5.10148 5.12700 5.29814 5.37439 5.50230 5.55471 5.58245 5.63505 5.66673 5.68026 5.78629 5.82207 5.92500 5.99393 6.04592 6.05929 6.19777 6.20782 6.23016 6.36869 6.44408 6.66098 6.69302 6.84632 6.97337 7.21649 7.27647 7.36437 7.46729 7.77480 7.89229 7.97611 8.09749 8.27747 8.55153 8.98059 9.61384 11.08874 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014316 B = 0.002965 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.398902 B = 9440.412922 C =10626.651419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.033 4.033 4 C 0.004 3.996 5 C -0.099 4.099 6 O -0.180 6.180 7 C 0.440 3.560 8 N -0.629 5.629 9 C 0.506 3.494 10 O -0.445 6.445 11 C -0.115 4.115 12 C 0.080 3.920 13 H 0.074 0.926 14 C -0.502 4.502 15 H 0.052 0.948 16 C 0.081 3.919 17 N -0.878 5.878 18 Si 0.886 3.114 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.023 4.023 23 C -0.115 4.115 24 C -0.131 4.131 25 C -0.154 4.154 26 C -0.128 4.128 27 C -0.117 4.117 28 N -0.518 5.518 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.211 0.789 37 H 0.430 0.570 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.261 0.739 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.321 -2.818 7.036 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.071 4.071 4 C -0.116 4.116 5 C -0.171 4.171 6 O -0.064 6.064 7 C 0.144 3.856 8 N -0.291 5.291 9 C 0.293 3.707 10 O -0.310 6.310 11 C -0.156 4.156 12 C 0.061 3.939 13 H 0.092 0.908 14 C -0.540 4.540 15 H 0.070 0.930 16 C -0.123 4.123 17 N -0.515 5.515 18 Si 0.714 3.286 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.023 4.023 23 C -0.133 4.133 24 C -0.149 4.149 25 C -0.172 4.172 26 C -0.146 4.146 27 C -0.136 4.136 28 N -0.258 5.258 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.228 0.772 37 H 0.270 0.730 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.115 -2.444 6.649 14.906 hybrid contribution 0.336 -0.227 -1.380 1.438 sum -12.779 -2.671 5.269 14.078 Atomic orbital electron populations 1.21787 0.95807 1.01661 1.01670 1.21439 0.95219 0.96001 1.02926 1.19929 0.86268 0.98082 1.02780 1.21465 0.97297 0.99365 0.93503 1.24584 0.79580 1.08494 1.04411 1.84735 1.29975 1.54094 1.37581 1.21735 0.87909 0.91037 0.84939 1.43377 1.01729 1.53248 1.30733 1.21614 0.82570 0.80761 0.85762 1.90876 1.83930 1.32855 1.23299 1.21864 0.93255 1.01944 0.98506 1.17855 0.84113 0.99841 0.92097 0.90790 1.20668 1.40545 1.00862 0.91876 0.92993 1.24804 0.94246 0.94619 0.98631 1.69894 1.36569 1.12937 1.32079 0.86751 0.78234 0.78663 0.84908 1.20257 1.21313 1.20382 1.20645 0.98301 0.92342 0.91055 1.20946 0.97408 0.96386 0.98544 1.20979 0.96142 0.98265 0.99552 1.20811 1.00132 0.93414 1.02849 1.20987 0.97813 0.95554 1.00226 1.21081 0.95432 0.99541 0.97510 1.70577 0.97801 1.28034 1.29357 0.92698 0.92829 0.92730 0.92100 0.91052 0.90378 0.90417 0.77203 0.72951 0.90465 0.89446 0.92921 0.86834 0.87613 0.87767 0.87595 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.12 5.91 -26.73 -0.16 -1.27 16 3 C -0.03 -0.32 5.78 -27.88 -0.16 -0.48 16 4 C 0.00 0.05 6.36 -82.80 -0.53 -0.48 16 5 C -0.10 -1.42 12.05 29.30 0.35 -1.06 16 6 O -0.18 -3.39 9.09 -17.87 -0.16 -3.55 16 7 C 0.44 7.65 8.88 -86.60 -0.77 6.88 16 8 N -0.63 -9.88 5.39 -13.06 -0.07 -9.95 16 9 C 0.51 9.76 7.53 -10.98 -0.08 9.68 16 10 O -0.45 -10.91 13.75 -16.29 -0.22 -11.13 16 11 C -0.12 -2.05 4.95 -27.88 -0.14 -2.19 16 12 C 0.08 1.82 1.67 -92.92 -0.16 1.66 16 13 H 0.07 1.94 6.97 -51.93 -0.36 1.58 16 14 C -0.50 -13.06 6.38 -34.44 -0.22 -13.28 16 15 H 0.05 1.34 7.82 -52.48 -0.41 0.93 16 16 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 17 N -0.88 -25.31 12.87 55.43 0.71 -24.60 16 18 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.02 -0.48 4.77 -104.63 -0.50 -0.98 16 23 C -0.11 -2.21 8.86 -39.59 -0.35 -2.56 16 24 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 25 C -0.15 -2.59 10.05 -39.58 -0.40 -2.98 16 26 C -0.13 -2.28 10.05 -39.58 -0.40 -2.67 16 27 C -0.12 -2.39 9.67 -39.59 -0.38 -2.77 16 28 N -0.52 -8.17 11.32 -10.57 -0.12 -8.29 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 36 H 0.21 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.43 5.01 8.82 -40.82 -0.36 4.65 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.09 1.38 7.77 -51.92 -0.40 0.98 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.11 2.09 7.76 -52.48 -0.41 1.68 16 42 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.11 2.34 7.95 -52.48 -0.42 1.92 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -33.17 384.34 -9.67 -42.84 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.57 Total: 5.66 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -4.01 Total: -13.76 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.52 Total: -42.84 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.39 Total: -14.68 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.17 -9.67 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580782283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.894 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds