Wall clock time and date at job start Tue Mar 31 2020 15:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46775 * 2 1 4 4 C 1.50705 * 109.46871 * 180.02562 * 3 2 1 5 5 C 1.34177 * 126.10935 * 125.00071 * 4 3 2 6 6 O 1.35018 * 107.25392 * 179.76204 * 5 4 3 7 7 C 1.34199 * 107.74209 * 0.41954 * 6 5 4 8 8 N 1.38646 * 125.70325 * 179.83757 * 7 6 5 9 9 C 1.34782 * 119.99750 * 359.69387 * 8 7 6 10 10 O 1.21273 * 120.00164 * 0.27555 * 9 8 7 11 11 C 1.50701 * 119.99823 * 179.97438 * 9 8 7 12 12 C 1.53002 * 109.46995 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46901 * 55.00194 * 12 11 9 14 14 C 1.50703 * 109.47040 * 295.00409 * 12 11 9 15 15 H 1.08005 * 119.99987 * 325.83233 * 14 12 11 16 16 C 1.37873 * 119.99980 * 145.84100 * 14 12 11 17 17 N 1.31515 * 119.99812 * 6.11078 * 16 14 12 18 18 Si 1.86801 * 120.00160 * 186.11627 * 16 14 12 19 19 H 1.48502 * 109.47188 * 59.99796 * 18 16 14 20 20 H 1.48498 * 109.47107 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46722 * 299.99810 * 18 16 14 22 22 C 1.50701 * 109.46890 * 175.00204 * 12 11 9 23 23 C 1.38234 * 120.00064 * 63.47006 * 22 12 11 24 24 C 1.38232 * 120.00078 * 179.78437 * 23 22 12 25 25 C 1.38238 * 119.99970 * 0.44134 * 24 23 22 26 26 C 1.38238 * 119.99828 * 359.81164 * 25 24 23 27 27 C 1.38228 * 120.00036 * 243.73662 * 22 12 11 28 28 N 1.30956 * 108.59944 * 359.57624 * 7 6 5 29 29 H 1.09002 * 109.46984 * 299.99764 * 1 2 3 30 30 H 1.09000 * 109.47461 * 59.99638 * 1 2 3 31 31 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47160 * 240.00471 * 2 1 3 33 33 H 1.08993 * 109.47170 * 119.99761 * 2 1 3 34 34 H 1.09002 * 109.47172 * 60.00351 * 3 2 1 35 35 H 1.08991 * 109.47531 * 300.00094 * 3 2 1 36 36 H 1.08002 * 126.37438 * 0.02562 * 5 4 3 37 37 H 0.96998 * 120.00179 * 179.68839 * 8 7 6 38 38 H 1.08999 * 109.47548 * 300.00523 * 11 9 8 39 39 H 1.09010 * 109.46841 * 60.00317 * 11 9 8 40 40 H 0.97005 * 120.00042 * 180.02562 * 17 16 14 41 41 H 1.08007 * 119.99688 * 359.97438 * 23 22 12 42 42 H 1.08000 * 120.00072 * 180.27054 * 24 23 22 43 43 H 1.07996 * 120.00001 * 179.83350 * 25 24 23 44 44 H 1.07993 * 119.99955 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.00063 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3374 2.0646 -0.8888 6 8 5.6152 1.8186 -0.5289 7 6 5.5897 1.0438 0.5665 8 7 6.6999 0.5667 1.2462 9 6 7.9387 0.8710 0.8109 10 8 8.0822 1.5662 -0.1724 11 6 9.1455 0.3529 1.5500 12 6 10.4179 0.8394 0.8533 13 1 10.3932 1.9259 0.7690 14 6 10.5012 0.2305 -0.5227 15 1 10.1279 -0.7682 -0.6949 16 6 11.0543 0.9484 -1.5618 17 7 11.6171 2.1141 -1.3294 18 14 11.0040 0.2654 -3.2998 19 1 9.5915 0.0666 -3.7128 20 1 11.6604 1.2220 -4.2267 21 1 11.7196 -1.0351 -3.3413 22 6 11.6217 0.4253 1.6597 23 6 11.9044 -0.9157 1.8409 24 6 13.0111 -1.2955 2.5768 25 6 13.8302 -0.3344 3.1394 26 6 13.5446 1.0066 2.9626 27 6 12.4402 1.3863 2.2229 28 7 4.3408 0.8182 0.8895 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9565 -0.8899 36 1 4.0119 2.6558 -1.7321 37 1 6.5852 0.0141 2.0350 38 1 9.1290 0.7210 2.5758 39 1 9.1283 -0.7370 1.5548 40 1 12.0059 2.6193 -2.0605 41 1 11.2621 -1.6666 1.4047 42 1 13.2344 -2.3431 2.7146 43 1 14.6933 -0.6311 3.7166 44 1 14.1841 1.7574 3.4024 45 1 12.2172 2.4340 2.0847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580782283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:29 Heat of formation + Delta-G solvation = -17.239856 kcal Electronic energy + Delta-G solvation = -27058.160250 eV Core-core repulsion = 23234.152380 eV Total energy + Delta-G solvation = -3824.007869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.33260 -40.98590 -39.75181 -36.94321 -36.39119 -35.77253 -34.51342 -33.45909 -31.48384 -31.17099 -30.19078 -27.84350 -27.30581 -25.03197 -23.48656 -23.40136 -23.04547 -22.12385 -21.38414 -20.71898 -19.18563 -18.54501 -18.08498 -17.90976 -17.27458 -17.14864 -16.50012 -16.13522 -15.95687 -15.67006 -15.45597 -15.31964 -15.00356 -14.38180 -14.30256 -14.10098 -13.99530 -13.69043 -13.62229 -13.21396 -13.13496 -12.87508 -12.68335 -12.56809 -12.51057 -12.34827 -12.14647 -11.82249 -11.79475 -11.71152 -11.43419 -11.37633 -11.28779 -11.09168 -10.93219 -10.45763 -9.51832 -9.23152 -9.19101 -8.07544 -6.10476 0.40934 0.80272 0.83548 1.09475 1.33607 1.37300 1.38460 1.42130 1.97104 2.20472 2.43618 3.18516 3.33744 3.48448 3.79819 3.94598 4.20709 4.23454 4.29440 4.31914 4.36693 4.39436 4.54528 4.56251 4.58245 4.72171 4.80546 4.82962 4.89808 4.93841 4.98384 5.01373 5.10200 5.18416 5.26717 5.36613 5.38373 5.41077 5.50276 5.52459 5.61883 5.76629 5.86321 5.93713 6.01624 6.15407 6.39725 6.47665 6.84573 6.97781 7.11731 7.53508 9.01577 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014316 B = 0.002965 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.398902 B = 9440.412922 C =10626.651419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.030 4.030 4 C -0.001 4.001 5 C -0.106 4.106 6 O -0.216 6.216 7 C 0.410 3.590 8 N -0.611 5.611 9 C 0.511 3.489 10 O -0.508 6.508 11 C -0.108 4.108 12 C 0.082 3.918 13 H 0.027 0.973 14 C -0.493 4.493 15 H 0.051 0.949 16 C 0.027 3.973 17 N -0.914 5.914 18 Si 0.931 3.069 19 H -0.286 1.286 20 H -0.289 1.289 21 H -0.265 1.265 22 C -0.045 4.045 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.147 4.147 26 C -0.129 4.129 27 C -0.141 4.141 28 N -0.514 5.514 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.246 0.754 37 H 0.449 0.551 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.254 0.746 41 H 0.119 0.881 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.130 0.870 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.102 -4.714 8.467 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.068 4.068 4 C -0.120 4.120 5 C -0.176 4.176 6 O -0.101 6.101 7 C 0.114 3.886 8 N -0.274 5.274 9 C 0.299 3.701 10 O -0.377 6.377 11 C -0.148 4.148 12 C 0.063 3.937 13 H 0.046 0.954 14 C -0.531 4.531 15 H 0.069 0.931 16 C -0.172 4.172 17 N -0.553 5.553 18 Si 0.758 3.242 19 H -0.213 1.213 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.046 4.046 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.165 4.165 26 C -0.147 4.147 27 C -0.160 4.160 28 N -0.253 5.253 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.262 0.738 37 H 0.293 0.707 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.063 0.937 41 H 0.137 0.863 42 H 0.158 0.842 43 H 0.160 0.840 44 H 0.148 0.852 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.931 -4.390 8.125 16.714 hybrid contribution 0.480 0.335 -1.718 1.815 sum -13.451 -4.055 6.406 15.441 Atomic orbital electron populations 1.21744 0.93862 1.02214 1.02590 1.21399 0.96859 0.95476 1.01636 1.20122 0.83353 0.98684 1.04616 1.22149 0.99019 0.98330 0.92545 1.25429 0.78269 1.08526 1.05379 1.84721 1.32346 1.54698 1.38360 1.22045 0.88565 0.92370 0.85587 1.42965 1.00661 1.52810 1.30919 1.21826 0.83752 0.79637 0.84847 1.90857 1.85018 1.35745 1.26044 1.21767 0.90354 1.03332 0.99309 1.17637 0.87362 0.96917 0.91777 0.95438 1.21018 1.38157 1.00376 0.93564 0.93120 1.25443 0.95059 0.95172 1.01533 1.70030 1.38805 1.14273 1.32190 0.86043 0.77513 0.78602 0.82030 1.21268 1.21475 1.18972 1.20467 0.97935 0.93653 0.92552 1.21059 0.98643 0.95363 0.99269 1.21372 0.94871 1.00253 0.97969 1.21264 1.00713 0.92575 1.01932 1.21274 0.96957 0.97147 0.99329 1.21096 0.96964 0.98648 0.99257 1.70602 0.97362 1.27728 1.29641 0.92019 0.91649 0.92432 0.93006 0.92786 0.89400 0.87657 0.73790 0.70726 0.87113 0.86827 0.93699 0.86286 0.84203 0.84048 0.85197 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.12 -2.00 5.91 30.60 0.18 -1.82 16 3 C -0.03 -0.52 5.78 29.85 0.17 -0.35 16 4 C 0.00 -0.02 6.36 41.21 0.26 0.25 16 5 C -0.11 -2.98 12.05 66.89 0.81 -2.18 16 6 O -0.22 -8.38 9.09 12.24 0.11 -8.27 16 7 C 0.41 14.44 8.88 178.94 1.59 16.03 16 8 N -0.61 -19.30 5.39 -423.79 -2.28 -21.59 16 9 C 0.51 20.23 7.53 87.66 0.66 20.89 16 10 O -0.51 -26.19 13.75 17.89 0.25 -25.94 16 11 C -0.11 -3.82 4.95 29.85 0.15 -3.67 16 12 C 0.08 3.86 1.67 -12.28 -0.02 3.84 16 13 H 0.03 1.53 6.97 -2.39 -0.02 1.52 16 14 C -0.49 -26.36 6.38 25.60 0.16 -26.19 16 15 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 16 C 0.03 1.56 5.45 84.65 0.46 2.02 16 17 N -0.91 -55.40 12.87 21.45 0.28 -55.13 16 18 Si 0.93 46.44 29.54 68.60 2.03 48.47 16 19 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 20 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 21 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 22 C -0.05 -1.93 4.77 -19.87 -0.09 -2.03 16 23 C -0.13 -4.62 8.86 22.27 0.20 -4.42 16 24 C -0.13 -3.93 10.05 22.27 0.22 -3.71 16 25 C -0.15 -4.39 10.05 22.27 0.22 -4.17 16 26 C -0.13 -4.37 10.05 22.27 0.22 -4.15 16 27 C -0.14 -5.83 9.67 22.27 0.22 -5.62 16 28 N -0.51 -15.98 11.32 -301.67 -3.42 -19.40 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.11 1.26 8.11 -2.39 -0.02 1.24 16 36 H 0.25 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.45 10.08 8.82 -92.71 -0.82 9.26 16 38 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.11 3.43 7.77 -2.38 -0.02 3.41 16 40 H 0.25 15.02 8.31 -92.70 -0.77 14.24 16 41 H 0.12 4.16 7.76 -2.91 -0.02 4.14 16 42 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 43 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 44 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 45 H 0.09 4.13 7.95 -2.91 -0.02 4.11 16 Total: -1.00 -76.87 384.34 3.27 -73.60 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.18 Total: 24.60 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 6.13 Total: -16.34 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -5.42 Total: -96.11 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: 0.36 Total: -34.22 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -76.87 3.27 -73.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580782283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.362 kcal (2) G-P(sol) polarization free energy of solvation -76.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds