Wall clock time and date at job start Tue Mar 31 2020 15:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47103 * 2 1 4 4 C 1.50707 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.34181 * 126.10454 * 125.00234 * 4 3 2 6 6 O 1.35024 * 107.25111 * 179.76244 * 5 4 3 7 7 C 1.34202 * 107.73608 * 0.41775 * 6 5 4 8 8 N 1.38654 * 125.69558 * 179.84274 * 7 6 5 9 9 C 1.34781 * 119.99653 * 359.68653 * 8 7 6 10 10 O 1.21266 * 120.00510 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99210 * 180.02562 * 9 8 7 12 12 C 1.53010 * 109.46548 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46764 * 304.99788 * 12 11 9 14 14 C 1.50702 * 109.47438 * 64.99734 * 12 11 9 15 15 H 1.07998 * 119.99662 * 29.58560 * 14 12 11 16 16 C 1.37874 * 119.99803 * 209.58368 * 14 12 11 17 17 N 1.31514 * 120.00360 * 4.94263 * 16 14 12 18 18 Si 1.86805 * 119.99782 * 184.93897 * 16 14 12 19 19 H 1.48495 * 109.46951 * 90.00006 * 18 16 14 20 20 H 1.48499 * 109.47042 * 210.00353 * 18 16 14 21 21 H 1.48503 * 109.46755 * 330.00110 * 18 16 14 22 22 C 1.50697 * 109.46655 * 184.99720 * 12 11 9 23 23 C 1.38229 * 120.00571 * 296.76658 * 22 12 11 24 24 C 1.38228 * 120.00485 * 179.79058 * 23 22 12 25 25 C 1.38237 * 120.00030 * 0.44236 * 24 23 22 26 26 C 1.38237 * 119.99925 * 359.81127 * 25 24 23 27 27 C 1.38239 * 119.99811 * 117.04301 * 22 12 11 28 28 N 1.30944 * 108.60328 * 359.57462 * 7 6 5 29 29 H 1.08999 * 109.47611 * 299.99857 * 1 2 3 30 30 H 1.08998 * 109.47325 * 60.00505 * 1 2 3 31 31 H 1.08999 * 109.47412 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47461 * 239.99390 * 2 1 3 33 33 H 1.09009 * 109.46920 * 119.99778 * 2 1 3 34 34 H 1.08999 * 109.47332 * 60.00145 * 3 2 1 35 35 H 1.08996 * 109.47230 * 299.99506 * 3 2 1 36 36 H 1.08000 * 126.37970 * 0.02562 * 5 4 3 37 37 H 0.96995 * 119.99805 * 179.69051 * 8 7 6 38 38 H 1.08997 * 109.47556 * 60.00326 * 11 9 8 39 39 H 1.09001 * 109.47189 * 299.99428 * 11 9 8 40 40 H 0.96996 * 120.00215 * 180.02562 * 17 16 14 41 41 H 1.08003 * 119.99726 * 0.02562 * 23 22 12 42 42 H 1.08006 * 120.00507 * 180.27376 * 24 23 22 43 43 H 1.08002 * 120.00399 * 179.83420 * 25 24 23 44 44 H 1.07998 * 120.00137 * 180.02562 * 26 25 24 45 45 H 1.08005 * 119.99947 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3381 2.0641 -0.8871 6 8 5.6157 1.8183 -0.5261 7 6 5.5891 1.0438 0.5696 8 7 6.6989 0.5669 1.2504 9 6 7.9380 0.8710 0.8159 10 8 8.0822 1.5620 -0.1701 11 6 9.1441 0.3522 1.5556 12 6 10.4171 0.8397 0.8606 13 1 10.3923 0.5478 -0.1893 14 6 10.5019 2.3409 0.9627 15 1 10.0629 2.8502 1.8078 16 6 11.1400 3.0639 -0.0227 17 7 11.5890 2.4553 -1.0986 18 14 11.3665 4.9081 0.1704 19 1 12.6548 5.1792 0.8573 20 1 11.3754 5.5486 -1.1693 21 1 10.2494 5.4622 0.9767 22 6 11.6202 0.2222 1.5255 23 6 11.9002 0.5059 2.8491 24 6 13.0013 -0.0640 3.4602 25 6 13.8278 -0.9104 2.7451 26 6 13.5509 -1.1901 1.4199 27 6 12.4472 -0.6236 0.8101 28 7 4.3400 0.8184 0.8916 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 4.0134 2.6551 -1.7308 37 1 6.5835 0.0145 2.0392 38 1 9.1267 -0.7376 1.5599 39 1 9.1271 0.7201 2.5815 40 1 12.0382 2.9639 -1.7917 41 1 11.2564 1.1698 3.4069 42 1 13.2176 0.1542 4.4956 43 1 14.6897 -1.3536 3.2218 44 1 14.1964 -1.8517 0.8613 45 1 12.2308 -0.8421 -0.2253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580782286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:32 Heat of formation + Delta-G solvation = -17.101331 kcal Electronic energy + Delta-G solvation = -27027.830590 eV Core-core repulsion = 23203.828728 eV Total energy + Delta-G solvation = -3824.001862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.32703 -40.98403 -39.75901 -36.93841 -36.38576 -35.77413 -34.50880 -33.45347 -31.49119 -31.16828 -30.19431 -27.84170 -27.30309 -25.03028 -23.48643 -23.39638 -23.04428 -22.11805 -21.39153 -20.71387 -19.18101 -18.55460 -18.09550 -17.88318 -17.27372 -17.14423 -16.49235 -16.15757 -15.90956 -15.68707 -15.44656 -15.32922 -14.99467 -14.37513 -14.28358 -14.10474 -13.99430 -13.69535 -13.66390 -13.21141 -13.13166 -12.85426 -12.69219 -12.55687 -12.49547 -12.34440 -12.14127 -11.83836 -11.78805 -11.70601 -11.42632 -11.36013 -11.28310 -11.11125 -10.89701 -10.47408 -9.52654 -9.22618 -9.20480 -8.06417 -6.09670 0.41537 0.79471 0.82594 1.09835 1.35036 1.36967 1.37810 1.43784 1.97627 2.20935 2.43916 3.17923 3.33231 3.48729 3.80325 3.94692 4.21267 4.23266 4.29836 4.32447 4.36258 4.39108 4.54116 4.56799 4.58049 4.71747 4.81005 4.83341 4.90212 4.93297 4.98016 5.01876 5.10724 5.17026 5.27222 5.37236 5.38334 5.41528 5.50748 5.51481 5.64444 5.76669 5.85586 5.93586 6.01969 6.15738 6.39449 6.46816 6.85110 6.98384 7.12264 7.53569 9.02691 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.002934 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.625637 B = 9540.753083 C =10873.584494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.030 4.030 4 C -0.001 4.001 5 C -0.105 4.105 6 O -0.216 6.216 7 C 0.410 3.590 8 N -0.611 5.611 9 C 0.510 3.490 10 O -0.506 6.506 11 C -0.107 4.107 12 C 0.081 3.919 13 H 0.028 0.972 14 C -0.490 4.490 15 H 0.050 0.950 16 C 0.023 3.977 17 N -0.914 5.914 18 Si 0.932 3.068 19 H -0.273 1.273 20 H -0.293 1.293 21 H -0.273 1.273 22 C -0.047 4.047 23 C -0.124 4.124 24 C -0.127 4.127 25 C -0.146 4.146 26 C -0.130 4.130 27 C -0.142 4.142 28 N -0.514 5.514 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.246 0.754 37 H 0.449 0.551 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.254 0.746 41 H 0.120 0.880 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.130 0.870 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.970 -7.154 6.866 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.068 4.068 4 C -0.121 4.121 5 C -0.175 4.175 6 O -0.101 6.101 7 C 0.114 3.886 8 N -0.274 5.274 9 C 0.298 3.702 10 O -0.375 6.375 11 C -0.147 4.147 12 C 0.061 3.939 13 H 0.046 0.954 14 C -0.528 4.528 15 H 0.068 0.932 16 C -0.176 4.176 17 N -0.553 5.553 18 Si 0.760 3.240 19 H -0.199 1.199 20 H -0.219 1.219 21 H -0.198 1.198 22 C -0.048 4.048 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.164 4.164 26 C -0.148 4.148 27 C -0.160 4.160 28 N -0.254 5.254 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.262 0.738 37 H 0.293 0.707 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.063 0.937 41 H 0.138 0.862 42 H 0.159 0.841 43 H 0.160 0.840 44 H 0.148 0.852 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.809 -6.935 6.451 16.745 hybrid contribution 0.648 1.465 -0.839 1.809 sum -13.161 -5.470 5.612 15.318 Atomic orbital electron populations 1.21744 0.93906 1.02225 1.02559 1.21394 0.96817 0.95411 1.01686 1.20122 0.83373 0.98748 1.04568 1.22145 0.99013 0.98384 0.92529 1.25434 0.78265 1.08429 1.05419 1.84726 1.32355 1.54653 1.38357 1.22039 0.88548 0.92330 0.85655 1.42966 1.00675 1.52710 1.31027 1.21825 0.83749 0.79546 0.85039 1.90865 1.84972 1.35163 1.26500 1.21747 0.90337 1.02014 1.00608 1.17640 0.87382 0.94032 0.94801 0.95411 1.21029 1.34316 0.91588 1.05903 0.93216 1.25479 0.96011 1.01092 0.94984 1.70036 1.40167 1.36660 1.08486 0.85952 0.78414 0.82694 0.76954 1.19905 1.21925 1.19815 1.20479 0.97865 0.92524 0.93904 1.21069 0.98677 0.99840 0.94635 1.21380 0.94887 0.97565 1.00645 1.21272 1.00660 1.00172 0.94325 1.21278 0.97011 1.00531 0.95944 1.21108 0.96886 0.99011 0.99000 1.70591 0.97383 1.27855 1.29527 0.92123 0.91629 0.92386 0.92848 0.92808 0.89555 0.87626 0.73765 0.70749 0.87143 0.86814 0.93740 0.86179 0.84140 0.84025 0.85200 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.05 16 2 C -0.12 -1.95 5.91 30.59 0.18 -1.77 16 3 C -0.03 -0.53 5.78 29.85 0.17 -0.35 16 4 C 0.00 -0.02 6.36 41.21 0.26 0.24 16 5 C -0.11 -2.96 12.05 66.89 0.81 -2.15 16 6 O -0.22 -8.35 9.09 12.16 0.11 -8.24 16 7 C 0.41 14.43 8.88 178.94 1.59 16.02 16 8 N -0.61 -19.33 5.39 -423.79 -2.28 -21.62 16 9 C 0.51 20.24 7.54 87.66 0.66 20.90 16 10 O -0.51 -26.19 13.74 17.91 0.25 -25.94 16 11 C -0.11 -3.81 4.95 29.85 0.15 -3.66 16 12 C 0.08 3.79 1.68 -12.28 -0.02 3.77 16 13 H 0.03 1.56 6.95 -2.39 -0.02 1.54 16 14 C -0.49 -26.21 6.38 25.60 0.16 -26.05 16 15 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 16 C 0.02 1.34 5.45 84.65 0.46 1.80 16 17 N -0.91 -55.49 12.85 21.45 0.28 -55.22 16 18 Si 0.93 46.13 29.54 68.60 2.03 48.16 16 19 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 20 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 21 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 22 C -0.05 -2.00 4.77 -19.87 -0.09 -2.09 16 23 C -0.12 -4.55 8.86 22.27 0.20 -4.36 16 24 C -0.13 -3.91 10.05 22.27 0.22 -3.68 16 25 C -0.15 -4.36 10.05 22.27 0.22 -4.14 16 26 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 27 C -0.14 -5.85 9.67 22.27 0.22 -5.63 16 28 N -0.51 -15.99 11.32 -301.68 -3.41 -19.40 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.11 1.26 8.11 -2.39 -0.02 1.24 16 36 H 0.25 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.45 10.10 8.82 -92.71 -0.82 9.29 16 38 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.11 3.44 7.76 -2.39 -0.02 3.42 16 40 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.12 4.17 7.75 -2.91 -0.02 4.14 16 42 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 43 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 45 H 0.09 4.14 7.95 -2.91 -0.02 4.12 16 Total: -1.00 -76.97 384.28 3.27 -73.70 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.18 Total: 24.94 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 6.13 Total: -16.37 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -5.42 Total: -96.24 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: 0.36 Total: -34.19 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -76.97 3.27 -73.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580782286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.599 kcal (2) G-P(sol) polarization free energy of solvation -76.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds