Wall clock time and date at job start Tue Mar 31 2020 15:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 5 5 C 1.47201 * 109.47093 * 300.00036 * 4 2 1 6 6 N 3.43556 * 83.99544 * 81.44174 * 2 1 3 7 7 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 8 8 S 1.81399 * 109.47147 * 60.00120 * 7 2 1 9 9 O 1.42104 * 110.53977 * 291.62707 * 8 7 2 10 10 O 1.42095 * 110.54514 * 68.37328 * 8 7 2 11 11 N 1.65598 * 104.45041 * 180.02562 * 8 7 2 12 12 C 1.46926 * 120.62714 * 269.71783 * 11 8 7 13 13 C 1.53625 * 108.54261 * 126.36943 * 12 11 8 14 14 C 1.53036 * 109.24240 * 54.85535 * 13 12 11 15 15 C 1.53000 * 109.44853 * 178.49838 * 14 13 12 16 16 C 1.50702 * 109.47232 * 295.05971 * 15 14 13 17 17 H 1.08000 * 119.99938 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00100 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99910 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00252 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47139 * 90.00092 * 20 18 16 22 22 H 1.48491 * 109.47220 * 210.00151 * 20 18 16 23 23 H 1.48498 * 109.46865 * 330.00286 * 20 18 16 24 24 C 1.53043 * 109.53940 * 298.51192 * 14 13 12 25 25 C 1.46925 * 120.63296 * 89.99622 * 11 8 7 26 26 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 27 27 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 28 28 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 31 31 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 32 32 H 1.09001 * 109.47002 * 59.99738 * 4 2 1 33 33 H 1.08993 * 109.46955 * 180.02562 * 4 2 1 34 34 H 1.08996 * 109.46952 * 180.02562 * 7 2 1 35 35 H 1.09001 * 109.46832 * 300.00199 * 7 2 1 36 36 H 1.08997 * 109.59028 * 246.20059 * 12 11 8 37 37 H 1.09006 * 109.58885 * 6.62702 * 12 11 8 38 38 H 1.09008 * 109.63350 * 294.86608 * 13 12 11 39 39 H 1.08998 * 109.43271 * 174.72920 * 13 12 11 40 40 H 1.09004 * 109.46032 * 58.53254 * 14 13 12 41 41 H 1.08998 * 109.47346 * 55.06325 * 15 14 13 42 42 H 1.09008 * 109.47122 * 175.06536 * 15 14 13 43 43 H 0.97004 * 119.99858 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.49779 * 301.41348 * 24 14 13 45 45 H 1.08995 * 109.49932 * 181.31565 * 24 14 13 46 46 H 1.08993 * 109.58593 * 353.37796 * 25 11 8 47 47 H 1.09006 * 109.58400 * 113.65503 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.5493 -0.0272 2.4512 6 7 1.1706 0.5085 3.3787 7 6 2.0400 -0.7213 -1.2492 8 16 1.4354 0.1337 -2.7304 9 8 0.0280 -0.0185 -2.8543 10 8 2.0479 1.4098 -2.8545 11 7 2.0530 -0.7410 -3.9935 12 6 3.3620 -0.4030 -4.5688 13 6 4.2371 -1.6656 -4.5672 14 6 3.5011 -2.7904 -5.2986 15 6 4.3841 -4.0394 -5.3324 16 6 5.6141 -3.7629 -6.1581 17 1 5.7523 -2.7931 -6.6129 18 6 6.5634 -4.7475 -6.3321 19 7 6.3953 -5.9283 -5.7778 20 14 8.0883 -4.4045 -7.3550 21 1 9.1621 -3.8706 -6.4792 22 1 8.5500 -5.6635 -7.9928 23 1 7.7651 -3.4067 -8.4062 24 6 2.1955 -3.1088 -4.5662 25 6 1.2998 -1.8661 -4.5642 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 -1.7488 1.2494 33 1 3.1299 -0.7208 1.2495 34 1 3.1300 -0.7217 -1.2489 35 1 1.6766 -1.7490 -1.2491 36 1 3.2312 -0.0472 -5.5908 37 1 3.8362 0.3728 -3.9675 38 1 4.4386 -1.9703 -3.5401 39 1 5.1779 -1.4554 -5.0759 40 1 3.2781 -2.4757 -6.3181 41 1 4.6799 -4.3029 -4.3169 42 1 3.8278 -4.8659 -5.7748 43 1 7.0630 -6.6212 -5.9005 44 1 2.4162 -3.3998 -3.5392 45 1 1.6832 -3.9257 -5.0742 46 1 0.4128 -2.0559 -3.9599 47 1 1.0019 -1.6261 -5.5849 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584407941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:35 Heat of formation + Delta-G solvation = -70.200234 kcal Electronic energy + Delta-G solvation = -27089.801846 eV Core-core repulsion = 23398.941393 eV Total energy + Delta-G solvation = -3690.860452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -38.95329 -38.38220 -37.28701 -36.27001 -35.92314 -34.00362 -32.00430 -30.78916 -29.31780 -28.20752 -27.74886 -27.65344 -24.27191 -22.95928 -21.52213 -20.62211 -19.56377 -18.73473 -17.86996 -17.52136 -16.39762 -16.24524 -16.14588 -15.50191 -15.45182 -14.59287 -14.55348 -14.11088 -14.09057 -13.96964 -13.69258 -13.46248 -13.34020 -13.13621 -12.98466 -12.82050 -12.48666 -12.36295 -12.11499 -12.01280 -11.94632 -11.87856 -11.67967 -11.54953 -11.52386 -11.27441 -11.21241 -11.01506 -10.83976 -10.73658 -10.67155 -10.37177 -10.18774 -9.70929 -9.41234 -9.03885 -8.69363 -8.40022 -6.05120 -4.06929 0.12798 2.39660 2.46503 2.56722 3.27482 3.34988 3.37402 3.43998 3.76520 3.92473 4.12189 4.24000 4.28519 4.41236 4.63143 4.76163 4.80296 5.13279 5.14991 5.16415 5.23820 5.25651 5.30323 5.37624 5.44719 5.45648 5.49852 5.58183 5.62222 5.72009 5.78433 5.86159 5.87549 5.95022 6.11577 6.32542 6.34964 6.57212 6.60920 6.91778 6.95669 7.06287 7.22515 7.61475 7.75228 7.94572 8.37369 8.99805 9.57406 11.06027 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.003022 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.220400 B = 9264.159433 C = 9891.926910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.041 4.041 3 C -0.182 4.182 4 C -0.014 4.014 5 C 0.211 3.789 6 N -0.437 5.437 7 C -0.629 4.629 8 S 2.610 3.390 9 O -0.955 6.955 10 O -0.954 6.954 11 N -0.995 5.995 12 C 0.117 3.883 13 C -0.120 4.120 14 C -0.080 4.080 15 C 0.027 3.973 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.131 4.131 25 C 0.121 3.879 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.781 9.631 9.761 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.044 4.044 3 C -0.240 4.240 4 C -0.055 4.055 5 C -0.107 4.107 6 N -0.114 5.114 7 C -0.757 4.757 8 S 2.703 3.297 9 O -0.945 6.945 10 O -0.944 6.944 11 N -0.833 5.833 12 C -0.008 4.008 13 C -0.159 4.159 14 C -0.098 4.098 15 C -0.010 4.010 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.716 3.284 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.170 4.170 25 C -0.004 4.004 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.808 11.027 11.082 19.006 hybrid contribution 1.579 -0.879 -0.600 1.904 sum -9.230 10.148 10.482 17.264 Atomic orbital electron populations 1.22468 0.92735 1.04383 1.04338 1.20182 0.96696 0.95643 0.91849 1.22470 1.03186 0.93974 1.04329 1.19437 1.02737 0.98803 0.84524 1.29056 0.93474 0.93801 0.94357 1.81250 1.09170 1.09351 1.11614 1.30843 1.13645 1.14365 1.16846 1.05042 0.74599 0.74905 0.75130 1.93576 1.29015 1.86650 1.85296 1.93580 1.78218 1.37343 1.85253 1.57621 1.30504 1.47264 1.47952 1.21733 0.81531 0.98123 0.99426 1.22007 0.98865 0.93837 1.01169 1.21154 0.93556 0.97653 0.97474 1.19134 0.93563 0.91226 0.97052 1.21246 1.04661 0.98304 1.31275 0.92562 1.25016 0.98321 0.95181 0.95929 1.69959 1.35327 1.03613 1.44633 0.86655 0.83480 0.77662 0.80562 1.20727 1.21334 1.19892 1.22057 0.97374 0.96143 1.01451 1.21519 0.93561 0.85723 0.99610 0.91316 0.90179 0.90545 0.90491 0.90181 0.91313 0.86612 0.86580 0.84023 0.84127 0.91095 0.89873 0.92356 0.89748 0.92237 0.96673 0.96637 0.93054 0.92108 0.91076 0.89932 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 7.74 37.16 0.29 -1.18 16 2 C -0.04 -0.29 0.57 -154.51 -0.09 -0.38 16 3 C -0.18 -1.50 7.74 37.16 0.29 -1.21 16 4 C -0.01 -0.08 4.79 -29.51 -0.14 -0.22 16 5 C 0.21 1.80 12.89 -20.76 -0.27 1.53 16 6 N -0.44 -5.06 18.54 42.15 0.78 -4.27 16 7 C -0.63 -4.50 5.18 37.16 0.19 -4.31 16 8 S 2.61 28.93 4.45 -107.50 -0.48 28.46 16 9 O -0.96 -12.51 14.34 -57.54 -0.83 -13.34 16 10 O -0.95 -12.74 14.34 -57.54 -0.82 -13.57 16 11 N -0.99 -11.88 3.21 -113.27 -0.36 -12.24 16 12 C 0.12 1.48 6.34 -3.49 -0.02 1.46 16 13 C -0.12 -1.83 5.20 -26.39 -0.14 -1.96 16 14 C -0.08 -1.38 2.10 -90.58 -0.19 -1.57 16 15 C 0.03 0.63 4.45 -27.88 -0.12 0.50 16 16 C -0.52 -13.34 8.39 -34.44 -0.29 -13.62 16 17 H 0.06 1.40 7.06 -52.49 -0.37 1.03 16 18 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 20 Si 0.89 20.62 29.54 -169.99 -5.02 15.59 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.13 -1.81 5.36 -26.61 -0.14 -1.96 16 25 C 0.12 1.44 6.31 -3.71 -0.02 1.42 16 26 H 0.07 0.55 7.23 -51.93 -0.38 0.17 16 27 H 0.08 0.76 5.46 -51.93 -0.28 0.48 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.77 5.46 -51.93 -0.28 0.49 16 31 H 0.07 0.56 7.23 -51.93 -0.38 0.18 16 32 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.14 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.94 7.09 -51.93 -0.37 0.57 16 38 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.08 1.42 6.91 -51.93 -0.36 1.06 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.08 0.85 7.10 -51.93 -0.37 0.48 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -33.10 377.38 -8.90 -42.00 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -7.84 Total: -3.40 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -0.75 Total: -20.07 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 1.15 Total: -41.37 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -1.65 Total: -26.90 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 28.93 SS G_CDS: -0.48 Total: 28.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.10 -8.90 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584407941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.197 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds