Wall clock time and date at job start Tue Mar 31 2020 15:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 5 5 C 1.47201 * 109.47093 * 300.00036 * 4 2 1 6 6 N 3.43556 * 83.99544 * 81.44174 * 2 1 3 7 7 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 8 8 S 1.81399 * 109.47147 * 60.00120 * 7 2 1 9 9 O 1.42104 * 110.53977 * 291.62707 * 8 7 2 10 10 O 1.42095 * 110.54514 * 68.37328 * 8 7 2 11 11 N 1.65598 * 104.45041 * 180.02562 * 8 7 2 12 12 C 1.46926 * 120.62714 * 269.71783 * 11 8 7 13 13 C 1.53625 * 108.54261 * 126.36943 * 12 11 8 14 14 C 1.53036 * 109.24240 * 54.85535 * 13 12 11 15 15 C 1.53000 * 109.44853 * 178.49838 * 14 13 12 16 16 C 1.50702 * 109.47232 * 295.05971 * 15 14 13 17 17 H 1.08000 * 119.99938 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00100 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99910 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00252 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47139 * 90.00092 * 20 18 16 22 22 H 1.48491 * 109.47220 * 210.00151 * 20 18 16 23 23 H 1.48498 * 109.46865 * 330.00286 * 20 18 16 24 24 C 1.53043 * 109.53940 * 298.51192 * 14 13 12 25 25 C 1.46925 * 120.63296 * 89.99622 * 11 8 7 26 26 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 27 27 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 28 28 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 31 31 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 32 32 H 1.09001 * 109.47002 * 59.99738 * 4 2 1 33 33 H 1.08993 * 109.46955 * 180.02562 * 4 2 1 34 34 H 1.08996 * 109.46952 * 180.02562 * 7 2 1 35 35 H 1.09001 * 109.46832 * 300.00199 * 7 2 1 36 36 H 1.08997 * 109.59028 * 246.20059 * 12 11 8 37 37 H 1.09006 * 109.58885 * 6.62702 * 12 11 8 38 38 H 1.09008 * 109.63350 * 294.86608 * 13 12 11 39 39 H 1.08998 * 109.43271 * 174.72920 * 13 12 11 40 40 H 1.09004 * 109.46032 * 58.53254 * 14 13 12 41 41 H 1.08998 * 109.47346 * 55.06325 * 15 14 13 42 42 H 1.09008 * 109.47122 * 175.06536 * 15 14 13 43 43 H 0.97004 * 119.99858 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.49779 * 301.41348 * 24 14 13 45 45 H 1.08995 * 109.49932 * 181.31565 * 24 14 13 46 46 H 1.08993 * 109.58593 * 353.37796 * 25 11 8 47 47 H 1.09006 * 109.58400 * 113.65503 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.5493 -0.0272 2.4512 6 7 1.1706 0.5085 3.3787 7 6 2.0400 -0.7213 -1.2492 8 16 1.4354 0.1337 -2.7304 9 8 0.0280 -0.0185 -2.8543 10 8 2.0479 1.4098 -2.8545 11 7 2.0530 -0.7410 -3.9935 12 6 3.3620 -0.4030 -4.5688 13 6 4.2371 -1.6656 -4.5672 14 6 3.5011 -2.7904 -5.2986 15 6 4.3841 -4.0394 -5.3324 16 6 5.6141 -3.7629 -6.1581 17 1 5.7523 -2.7931 -6.6129 18 6 6.5634 -4.7475 -6.3321 19 7 6.3953 -5.9283 -5.7778 20 14 8.0883 -4.4045 -7.3550 21 1 9.1621 -3.8706 -6.4792 22 1 8.5500 -5.6635 -7.9928 23 1 7.7651 -3.4067 -8.4062 24 6 2.1955 -3.1088 -4.5662 25 6 1.2998 -1.8661 -4.5642 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 -1.7488 1.2494 33 1 3.1299 -0.7208 1.2495 34 1 3.1300 -0.7217 -1.2489 35 1 1.6766 -1.7490 -1.2491 36 1 3.2312 -0.0472 -5.5908 37 1 3.8362 0.3728 -3.9675 38 1 4.4386 -1.9703 -3.5401 39 1 5.1779 -1.4554 -5.0759 40 1 3.2781 -2.4757 -6.3181 41 1 4.6799 -4.3029 -4.3169 42 1 3.8278 -4.8659 -5.7748 43 1 7.0630 -6.6212 -5.9005 44 1 2.4162 -3.3998 -3.5392 45 1 1.6832 -3.9257 -5.0742 46 1 0.4128 -2.0559 -3.9599 47 1 1.0019 -1.6261 -5.5849 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584407941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:34 Heat of formation + Delta-G solvation = -91.012087 kcal Electronic energy + Delta-G solvation = -27090.704315 eV Core-core repulsion = 23398.941393 eV Total energy + Delta-G solvation = -3691.762922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.58768 -39.47218 -38.19312 -37.07392 -36.72400 -35.60270 -33.68780 -31.85789 -29.83611 -29.41012 -28.69622 -28.35278 -25.87378 -24.05949 -22.91323 -21.41428 -20.67714 -19.66343 -18.74786 -18.31498 -18.12266 -17.12486 -16.94558 -16.51593 -16.14623 -16.02386 -15.45366 -15.17301 -14.93797 -14.81051 -14.68976 -14.65297 -14.54011 -13.94219 -13.87979 -13.67604 -13.60014 -13.40164 -13.21466 -12.98878 -12.95619 -12.79358 -12.61143 -12.53267 -12.48294 -12.34025 -12.28683 -12.19140 -12.06527 -11.93938 -11.78581 -11.66405 -11.35103 -11.18771 -10.88058 -10.70983 -10.44620 -9.78116 -8.11016 -6.18469 -0.67936 1.44144 1.45702 1.55084 1.68050 1.80253 1.85895 2.47011 2.81597 3.06831 3.19889 3.23333 3.56135 3.60865 3.71916 3.80605 4.11273 4.17190 4.18661 4.29349 4.41383 4.49749 4.60706 4.62052 4.64607 4.73011 4.75573 4.76003 4.87751 4.92568 4.93451 5.00164 5.03494 5.13536 5.22305 5.25959 5.28376 5.40576 5.46398 5.47949 5.53690 5.69324 5.76790 5.95390 6.01612 6.39315 6.63322 6.99207 7.49855 9.00273 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.003022 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.220400 B = 9264.159433 C = 9891.926910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.038 4.038 3 C -0.190 4.190 4 C -0.013 4.013 5 C 0.236 3.764 6 N -0.500 5.500 7 C -0.608 4.608 8 S 2.604 3.396 9 O -0.981 6.981 10 O -0.983 6.983 11 N -0.999 5.999 12 C 0.123 3.877 13 C -0.115 4.115 14 C -0.075 4.075 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.061 0.939 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.951 3.049 21 H -0.273 1.273 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.125 4.125 25 C 0.124 3.876 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.047 0.953 41 H -0.003 1.003 42 H -0.015 1.015 43 H 0.260 0.740 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.104 0.896 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 9.608 10.546 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.041 4.041 3 C -0.247 4.247 4 C -0.053 4.053 5 C -0.081 4.081 6 N -0.178 5.178 7 C -0.741 4.741 8 S 2.703 3.297 9 O -0.972 6.972 10 O -0.974 6.974 11 N -0.836 5.836 12 C -0.002 4.002 13 C -0.154 4.154 14 C -0.094 4.094 15 C -0.005 4.005 16 C -0.563 4.563 17 H 0.079 0.921 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.777 3.223 21 H -0.199 1.199 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.164 4.164 25 C -0.001 4.001 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.187 0.813 35 H 0.190 0.810 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.015 0.985 42 H 0.003 0.997 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.122 0.878 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.279 11.046 11.814 19.164 hybrid contribution 1.378 -0.879 -0.832 1.834 sum -8.901 10.167 10.982 17.412 Atomic orbital electron populations 1.22540 0.93683 1.05213 1.03183 1.20150 0.95983 0.95167 0.92796 1.22545 1.04220 0.94752 1.03180 1.19741 1.04520 0.99477 0.81577 1.29650 0.91838 0.92445 0.94143 1.81279 1.11326 1.11357 1.13806 1.30664 1.15299 1.14979 1.13128 1.05060 0.73973 0.74629 0.76075 1.93547 1.30622 1.86892 1.86099 1.93547 1.78376 1.39350 1.86095 1.57588 1.29932 1.47111 1.48978 1.21600 0.81643 0.97039 0.99907 1.21905 0.98170 0.94178 1.01121 1.21011 0.94628 0.95717 0.98037 1.19037 0.93440 0.92941 0.95047 1.21706 1.05437 0.98274 1.30870 0.92122 1.25841 1.01480 0.95091 0.97248 1.70084 1.36476 1.04572 1.46394 0.85653 0.80012 0.77424 0.79199 1.19890 1.21533 1.19060 1.21971 0.95661 0.97142 1.01622 1.21494 0.93719 0.84706 1.00208 0.91878 0.92034 0.88754 0.88950 0.92050 0.91846 0.83368 0.83555 0.81301 0.81037 0.91529 0.88152 0.91168 0.91745 0.93413 0.98453 0.99657 0.93150 0.90650 0.91307 0.87787 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 7.74 71.98 0.56 -2.06 16 2 C -0.04 -0.41 0.57 -52.18 -0.03 -0.44 16 3 C -0.19 -2.72 7.74 71.98 0.56 -2.16 16 4 C -0.01 -0.08 4.79 28.79 0.14 0.06 16 5 C 0.24 3.45 12.89 89.44 1.15 4.60 16 6 N -0.50 -11.11 18.54 20.01 0.37 -10.74 16 7 C -0.61 -5.97 5.18 71.98 0.37 -5.59 16 8 S 2.60 51.81 4.45 -56.49 -0.25 51.56 16 9 O -0.98 -24.16 14.34 -127.65 -1.83 -25.99 16 10 O -0.98 -24.94 14.34 -127.65 -1.83 -26.77 16 11 N -1.00 -21.51 3.21 -512.29 -1.65 -23.15 16 12 C 0.12 2.89 6.34 86.51 0.55 3.44 16 13 C -0.11 -3.32 5.20 30.82 0.16 -3.16 16 14 C -0.08 -2.56 2.10 -10.77 -0.02 -2.58 16 15 C 0.03 1.51 4.45 29.85 0.13 1.64 16 16 C -0.52 -27.23 8.39 25.60 0.21 -27.01 16 17 H 0.06 3.02 7.06 -2.91 -0.02 3.00 16 18 C 0.00 0.03 5.46 84.65 0.46 0.50 16 19 N -0.93 -54.04 13.29 21.45 0.28 -53.76 16 20 Si 0.95 42.21 29.54 68.60 2.03 44.24 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 C -0.13 -3.23 5.36 30.67 0.16 -3.07 16 25 C 0.12 2.68 6.31 86.36 0.55 3.22 16 26 H 0.06 0.93 7.23 -2.39 -0.02 0.91 16 27 H 0.06 1.10 5.46 -2.39 -0.01 1.09 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.13 5.46 -2.39 -0.01 1.12 16 31 H 0.06 0.96 7.23 -2.39 -0.02 0.94 16 32 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.17 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.17 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.10 2.03 7.09 -2.38 -0.02 2.02 16 38 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.06 2.11 6.91 -2.39 -0.02 2.10 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 41 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 42 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 43 H 0.26 14.29 8.31 -92.71 -0.77 13.51 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.10 1.84 7.10 -2.39 -0.02 1.83 16 47 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -74.68 377.38 3.02 -71.66 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 0.95 Total: 5.55 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 4.95 Total: -32.61 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -0.99 Total: -87.64 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -3.66 Total: -52.76 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 51.81 SS G_CDS: -0.25 Total: 51.56 kcal Total: -74.68 3.02 -71.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584407941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.354 kcal (2) G-P(sol) polarization free energy of solvation -74.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds