Wall clock time and date at job start Tue Mar 31 2020 15:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 119.99839 * 2 1 4 4 C 1.53002 * 109.47025 * 124.99809 * 3 2 1 5 5 C 1.53001 * 109.46782 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47258 * 54.77437 * 5 4 3 7 7 C 1.53006 * 109.46667 * 174.77014 * 5 4 3 8 8 O 1.42900 * 109.47273 * 55.00291 * 7 5 4 9 9 N 1.46499 * 109.47225 * 294.76767 * 5 4 3 10 10 C 1.34780 * 119.99574 * 151.93712 * 9 5 4 11 11 O 1.21663 * 120.00220 * 5.00737 * 10 9 5 12 12 C 1.46888 * 119.99431 * 185.00920 * 10 9 5 13 13 C 1.36130 * 125.43356 * 173.64741 * 12 10 9 14 14 C 1.41700 * 107.74731 * 180.27866 * 13 12 10 15 15 C 1.40018 * 133.35039 * 179.78646 * 14 13 12 16 16 C 1.36586 * 119.83080 * 179.97438 * 15 14 13 17 17 C 1.38850 * 120.59890 * 359.95437 * 16 15 14 18 18 C 1.37845 * 120.63564 * 0.02562 * 17 16 15 19 19 C 1.39088 * 119.81148 * 0.02562 * 18 17 16 20 20 N 1.37844 * 133.16410 * 180.02562 * 19 18 17 21 21 C 1.36891 * 125.61637 * 359.97438 * 20 19 18 22 22 H 1.08005 * 119.99776 * 133.32818 * 21 20 19 23 23 C 1.39004 * 120.00221 * 313.33254 * 21 20 19 24 24 N 1.31344 * 120.00280 * 339.13173 * 23 21 20 25 25 Si 1.86805 * 119.99953 * 159.13280 * 23 21 20 26 26 H 1.48502 * 109.47439 * 274.61601 * 25 23 21 27 27 H 1.48500 * 109.47032 * 34.62067 * 25 23 21 28 28 H 1.48501 * 109.47072 * 154.61581 * 25 23 21 29 29 H 1.07996 * 119.99530 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.99886 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00223 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.46980 * 4.99508 * 3 2 1 33 33 H 1.08997 * 109.47006 * 244.99838 * 3 2 1 34 34 H 1.09004 * 109.47096 * 60.00056 * 4 3 2 35 35 H 1.08997 * 109.47252 * 299.99879 * 4 3 2 36 36 H 1.09006 * 109.46549 * 175.00314 * 7 5 4 37 37 H 1.09004 * 109.47215 * 294.99826 * 7 5 4 38 38 H 0.96699 * 113.99315 * 179.97438 * 8 7 5 39 39 H 0.96991 * 119.99962 * 331.93834 * 9 5 4 40 40 H 1.07997 * 126.12783 * 0.02562 * 13 12 10 41 41 H 1.07998 * 120.08881 * 359.97438 * 15 14 13 42 42 H 1.07999 * 119.69922 * 179.97438 * 16 15 14 43 43 H 1.08000 * 119.68478 * 180.02562 * 17 16 15 44 44 H 1.08004 * 120.09711 * 179.97438 * 18 17 16 45 45 H 0.97003 * 119.99990 * 354.42429 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.8004 2.6580 1.1813 6 1 3.0923 3.4867 1.1769 7 6 4.6757 2.7416 2.4334 8 8 5.5240 1.5935 2.4992 9 7 4.6469 2.7325 -0.0121 10 6 4.9615 3.9316 -0.5412 11 8 4.6196 4.9540 0.0227 12 6 5.7173 4.0038 -1.7986 13 6 5.9880 5.1433 -2.4925 14 6 6.7296 4.7818 -3.6445 15 6 7.2714 5.5141 -4.7078 16 6 7.9547 4.8687 -5.6988 17 6 8.1189 3.4905 -5.6621 18 6 7.5950 2.7480 -4.6256 19 6 6.8944 3.3828 -3.6055 20 7 6.2696 2.9261 -2.4648 21 6 6.2033 1.6199 -2.0606 22 1 6.4206 1.3603 -1.0350 23 6 5.8565 0.6277 -2.9702 24 7 5.2081 0.9411 -4.0686 25 14 6.3124 -1.1517 -2.6303 26 1 7.6953 -1.4082 -3.1070 27 1 6.2358 -1.4121 -1.1703 28 1 5.3686 -2.0494 -3.3434 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4027 -0.9313 34 1 3.7400 0.5066 1.0921 35 1 2.4772 1.2357 2.1130 36 1 5.2870 3.6431 2.3898 37 1 4.0409 2.7756 3.3189 38 1 6.1082 1.5799 3.2696 39 1 4.9809 1.9191 -0.4214 40 1 5.6874 6.1433 -2.2166 41 1 7.1493 6.5866 -4.7443 42 1 8.3714 5.4357 -6.5182 43 1 8.6622 2.9953 -6.4534 44 1 7.7276 1.6763 -4.6060 45 1 4.9003 1.8505 -4.2074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590884737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:48 Heat of formation + Delta-G solvation = -23.093691 kcal Electronic energy + Delta-G solvation = -28618.531099 eV Core-core repulsion = 24794.269389 eV Total energy + Delta-G solvation = -3824.261711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.69626 -39.04256 -37.11716 -36.10207 -35.66722 -34.05862 -33.55541 -30.99136 -30.66029 -29.01340 -28.30664 -27.60701 -24.80697 -23.84042 -23.07581 -21.08213 -20.72629 -20.02842 -19.61004 -19.43384 -18.43878 -17.40972 -16.46406 -15.85373 -15.69879 -15.25275 -15.07564 -14.61284 -14.51752 -14.31172 -14.07783 -13.74825 -13.48472 -13.23481 -13.17070 -13.03629 -12.79510 -12.39854 -12.22124 -12.16763 -11.85654 -11.45943 -11.32156 -11.18218 -10.91370 -10.71009 -10.64023 -10.54320 -10.43256 -10.36479 -9.94389 -9.91540 -9.41013 -9.23709 -9.18771 -8.84840 -8.49613 -7.53690 -7.08235 -6.76997 -4.74232 1.69062 2.38630 2.58506 2.97539 3.08185 3.09008 3.26020 3.76170 3.83559 4.17201 4.34238 4.44204 4.66376 4.75236 4.85922 5.12221 5.17816 5.31542 5.42011 5.48549 5.57266 5.65912 5.69906 5.79903 5.85801 5.86370 5.98647 6.02760 6.05676 6.27066 6.30252 6.37229 6.43120 6.52988 6.73124 6.73740 6.86950 6.88467 6.93430 7.06477 7.26861 7.35661 7.44122 7.57750 7.70421 7.74436 7.79375 8.14123 8.28839 8.63888 8.92407 9.10154 10.06293 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.004965 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.189388 B = 5638.065438 C = 6752.706810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.139 4.139 3 C -0.100 4.100 4 C -0.113 4.113 5 C 0.145 3.855 6 H 0.095 0.905 7 C 0.065 3.935 8 O -0.564 6.564 9 N -0.711 5.711 10 C 0.595 3.405 11 O -0.564 6.564 12 C -0.017 4.017 13 C -0.167 4.167 14 C -0.129 4.129 15 C -0.081 4.081 16 C -0.160 4.160 17 C -0.135 4.135 18 C -0.082 4.082 19 C 0.075 3.925 20 N -0.265 5.265 21 C -0.455 4.455 22 H 0.104 0.896 23 C 0.034 3.966 24 N -0.818 5.818 25 Si 1.072 2.928 26 H -0.275 1.275 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.373 0.627 39 H 0.421 0.579 40 H 0.133 0.867 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.102 -1.808 7.217 7.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.157 4.157 3 C -0.137 4.137 4 C -0.151 4.151 5 C 0.039 3.961 6 H 0.113 0.887 7 C -0.014 4.014 8 O -0.369 6.369 9 N -0.371 5.371 10 C 0.384 3.616 11 O -0.444 6.444 12 C -0.131 4.131 13 C -0.195 4.195 14 C -0.134 4.134 15 C -0.100 4.100 16 C -0.179 4.179 17 C -0.155 4.155 18 C -0.101 4.101 19 C -0.039 4.039 20 N 0.070 4.930 21 C -0.582 4.582 22 H 0.121 0.879 23 C -0.183 4.183 24 N -0.443 5.443 25 Si 0.895 3.105 26 H -0.200 1.200 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.219 0.781 39 H 0.267 0.733 40 H 0.151 0.849 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.823 -3.160 6.547 7.798 hybrid contribution 0.446 1.362 0.922 1.705 sum -2.376 -1.798 7.469 8.042 Atomic orbital electron populations 1.23767 0.95945 1.01439 1.03248 1.23012 0.95947 0.98738 0.98051 1.20831 0.98093 0.94974 0.99817 1.21675 0.97733 0.97372 0.98341 1.21024 0.91714 0.98908 0.84436 0.88708 1.22654 0.92988 0.88407 0.97364 1.86529 1.55879 1.44240 1.50238 1.46698 1.51534 1.10320 1.28536 1.17275 0.78265 0.83331 0.82729 1.90701 1.56441 1.35004 1.62221 1.20281 1.05990 0.89123 0.97744 1.20420 1.06503 0.96797 0.95773 1.18022 1.05211 0.92775 0.97349 1.20130 0.98173 0.98137 0.93560 1.20328 1.03562 0.94499 0.99521 1.20599 1.02766 0.93895 0.98239 1.20110 0.98017 0.99212 0.92801 1.18489 1.00461 0.92382 0.92619 1.40111 1.32662 1.04972 1.15208 1.20468 1.56130 0.81098 1.00516 0.87912 1.26791 0.92633 1.06176 0.92692 1.70586 1.24165 1.24476 1.25075 0.83444 0.77610 0.72492 0.76909 1.20028 1.19861 1.19909 0.88836 0.88848 0.87380 0.91777 0.89921 0.90258 0.90969 0.93092 0.93349 0.78063 0.73273 0.84889 0.87468 0.87550 0.87227 0.86694 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.46 14.32 29.01 0.42 -2.05 16 2 C -0.14 -1.85 9.52 -36.02 -0.34 -2.19 16 3 C -0.10 -1.46 5.55 -27.88 -0.15 -1.61 16 4 C -0.11 -1.57 4.46 -26.73 -0.12 -1.69 16 5 C 0.14 2.29 2.37 -67.93 -0.16 2.13 16 6 H 0.10 1.53 7.56 -51.93 -0.39 1.13 16 7 C 0.06 0.90 6.87 37.16 0.26 1.16 16 8 O -0.56 -7.75 12.83 -35.23 -0.45 -8.20 16 9 N -0.71 -13.85 4.40 -55.04 -0.24 -14.09 16 10 C 0.59 13.32 7.75 -12.76 -0.10 13.22 16 11 O -0.56 -13.18 16.51 5.22 0.09 -13.10 16 12 C -0.02 -0.40 6.77 -82.25 -0.56 -0.96 16 13 C -0.17 -3.87 10.55 -39.02 -0.41 -4.29 16 14 C -0.13 -2.96 6.16 -106.89 -0.66 -3.62 16 15 C -0.08 -1.61 10.06 -39.51 -0.40 -2.01 16 16 C -0.16 -2.97 9.97 -39.95 -0.40 -3.37 16 17 C -0.13 -2.65 10.02 -39.50 -0.40 -3.04 16 18 C -0.08 -1.85 9.01 -39.41 -0.35 -2.21 16 19 C 0.07 1.81 5.55 -83.83 -0.47 1.35 16 20 N -0.26 -6.50 2.46 -56.08 -0.14 -6.64 16 21 C -0.46 -10.85 7.51 -15.01 -0.11 -10.97 16 22 H 0.10 2.41 6.58 -52.48 -0.35 2.07 16 23 C 0.03 0.81 4.35 -17.48 -0.08 0.73 16 24 N -0.82 -20.76 12.60 55.50 0.70 -20.06 16 25 Si 1.07 20.63 29.97 -169.99 -5.09 15.53 16 26 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 27 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 28 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 29 H 0.09 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.09 1.06 7.84 -52.49 -0.41 0.65 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.06 0.89 7.79 -51.93 -0.40 0.49 16 33 H 0.08 1.45 7.76 -51.93 -0.40 1.04 16 34 H 0.08 1.18 7.74 -51.93 -0.40 0.78 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.37 3.39 9.12 45.56 0.42 3.81 16 39 H 0.42 8.64 4.52 -40.82 -0.18 8.46 16 40 H 0.13 2.85 8.06 -52.49 -0.42 2.42 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 43 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 44 H 0.12 2.68 7.25 -52.48 -0.38 2.30 16 45 H 0.29 7.83 7.44 -40.82 -0.30 7.53 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -28.51 377.25 -8.90 -37.41 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -5.41 Total: 22.88 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -4.03 Total: -19.41 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.32 Total: -40.79 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.37 Total: -21.30 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.09 Total: 15.53 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.51 -8.90 -37.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.314 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds