Wall clock time and date at job start Tue Mar 31 2020 15:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 119.99839 * 2 1 4 4 C 1.53002 * 109.47025 * 124.99809 * 3 2 1 5 5 C 1.53001 * 109.46782 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47258 * 54.77437 * 5 4 3 7 7 C 1.53006 * 109.46667 * 174.77014 * 5 4 3 8 8 O 1.42900 * 109.47273 * 55.00291 * 7 5 4 9 9 N 1.46499 * 109.47225 * 294.76767 * 5 4 3 10 10 C 1.34780 * 119.99574 * 151.93712 * 9 5 4 11 11 O 1.21663 * 120.00220 * 5.00737 * 10 9 5 12 12 C 1.46888 * 119.99431 * 185.00920 * 10 9 5 13 13 C 1.36130 * 125.43356 * 173.64741 * 12 10 9 14 14 C 1.41700 * 107.74731 * 180.27866 * 13 12 10 15 15 C 1.40018 * 133.35039 * 179.78646 * 14 13 12 16 16 C 1.36586 * 119.83080 * 179.97438 * 15 14 13 17 17 C 1.38850 * 120.59890 * 359.95437 * 16 15 14 18 18 C 1.37845 * 120.63564 * 0.02562 * 17 16 15 19 19 C 1.39088 * 119.81148 * 0.02562 * 18 17 16 20 20 N 1.37844 * 133.16410 * 180.02562 * 19 18 17 21 21 C 1.36891 * 125.61637 * 359.97438 * 20 19 18 22 22 H 1.08005 * 119.99776 * 133.32818 * 21 20 19 23 23 C 1.39004 * 120.00221 * 313.33254 * 21 20 19 24 24 N 1.31344 * 120.00280 * 339.13173 * 23 21 20 25 25 Si 1.86805 * 119.99953 * 159.13280 * 23 21 20 26 26 H 1.48502 * 109.47439 * 274.61601 * 25 23 21 27 27 H 1.48500 * 109.47032 * 34.62067 * 25 23 21 28 28 H 1.48501 * 109.47072 * 154.61581 * 25 23 21 29 29 H 1.07996 * 119.99530 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.99886 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00223 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.46980 * 4.99508 * 3 2 1 33 33 H 1.08997 * 109.47006 * 244.99838 * 3 2 1 34 34 H 1.09004 * 109.47096 * 60.00056 * 4 3 2 35 35 H 1.08997 * 109.47252 * 299.99879 * 4 3 2 36 36 H 1.09006 * 109.46549 * 175.00314 * 7 5 4 37 37 H 1.09004 * 109.47215 * 294.99826 * 7 5 4 38 38 H 0.96699 * 113.99315 * 179.97438 * 8 7 5 39 39 H 0.96991 * 119.99962 * 331.93834 * 9 5 4 40 40 H 1.07997 * 126.12783 * 0.02562 * 13 12 10 41 41 H 1.07998 * 120.08881 * 359.97438 * 15 14 13 42 42 H 1.07999 * 119.69922 * 179.97438 * 16 15 14 43 43 H 1.08000 * 119.68478 * 180.02562 * 17 16 15 44 44 H 1.08004 * 120.09711 * 179.97438 * 18 17 16 45 45 H 0.97003 * 119.99990 * 354.42429 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.8004 2.6580 1.1813 6 1 3.0923 3.4867 1.1769 7 6 4.6757 2.7416 2.4334 8 8 5.5240 1.5935 2.4992 9 7 4.6469 2.7325 -0.0121 10 6 4.9615 3.9316 -0.5412 11 8 4.6196 4.9540 0.0227 12 6 5.7173 4.0038 -1.7986 13 6 5.9880 5.1433 -2.4925 14 6 6.7296 4.7818 -3.6445 15 6 7.2714 5.5141 -4.7078 16 6 7.9547 4.8687 -5.6988 17 6 8.1189 3.4905 -5.6621 18 6 7.5950 2.7480 -4.6256 19 6 6.8944 3.3828 -3.6055 20 7 6.2696 2.9261 -2.4648 21 6 6.2033 1.6199 -2.0606 22 1 6.4206 1.3603 -1.0350 23 6 5.8565 0.6277 -2.9702 24 7 5.2081 0.9411 -4.0686 25 14 6.3124 -1.1517 -2.6303 26 1 7.6953 -1.4082 -3.1070 27 1 6.2358 -1.4121 -1.1703 28 1 5.3686 -2.0494 -3.3434 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4027 -0.9313 34 1 3.7400 0.5066 1.0921 35 1 2.4772 1.2357 2.1130 36 1 5.2870 3.6431 2.3898 37 1 4.0409 2.7756 3.3189 38 1 6.1082 1.5799 3.2696 39 1 4.9809 1.9191 -0.4214 40 1 5.6874 6.1433 -2.2166 41 1 7.1493 6.5866 -4.7443 42 1 8.3714 5.4357 -6.5182 43 1 8.6622 2.9953 -6.4534 44 1 7.7276 1.6763 -4.6060 45 1 4.9003 1.8505 -4.2074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590884737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:46 Heat of formation + Delta-G solvation = -39.689757 kcal Electronic energy + Delta-G solvation = -28619.250759 eV Core-core repulsion = 24794.269389 eV Total energy + Delta-G solvation = -3824.981370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.42151 -40.59918 -38.46036 -37.76764 -36.77585 -35.65201 -35.07082 -32.52510 -32.21840 -30.64159 -29.83748 -28.93264 -26.61755 -25.23203 -24.43135 -22.78057 -22.22315 -21.50021 -21.16796 -20.65880 -20.13702 -18.65286 -18.00300 -17.46728 -17.22671 -16.75813 -16.49926 -16.10302 -15.97182 -15.68848 -15.56052 -15.14292 -15.02999 -14.84598 -14.68721 -14.44859 -14.16633 -13.90135 -13.81211 -13.52122 -13.34383 -12.80941 -12.68474 -12.47115 -12.39969 -12.15124 -12.12615 -11.95988 -11.89124 -11.71539 -11.57188 -11.23239 -10.96398 -10.90492 -10.58825 -10.32447 -9.98549 -9.36114 -8.84561 -8.51780 -6.61452 -0.01314 0.94621 1.25606 1.38845 1.48630 1.53245 1.74344 2.16803 2.26409 2.42178 2.62159 2.89873 3.17832 3.38411 3.60176 3.93276 3.96055 4.06816 4.09479 4.26284 4.31187 4.36667 4.41148 4.42215 4.52578 4.59430 4.61490 4.69011 4.74060 4.84972 4.86233 5.00092 5.07160 5.10275 5.16074 5.26611 5.27245 5.43889 5.54579 5.69273 5.72439 5.72991 5.81290 5.87991 6.02919 6.07531 6.42867 6.57779 6.84998 6.86992 7.21745 7.30063 8.15122 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.004965 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.189388 B = 5638.065438 C = 6752.706810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 C -0.095 4.095 4 C -0.101 4.101 5 C 0.134 3.866 6 H 0.090 0.910 7 C 0.072 3.928 8 O -0.580 6.580 9 N -0.703 5.703 10 C 0.589 3.411 11 O -0.582 6.582 12 C -0.045 4.045 13 C -0.177 4.177 14 C -0.149 4.149 15 C -0.084 4.084 16 C -0.151 4.151 17 C -0.120 4.120 18 C -0.114 4.114 19 C 0.051 3.949 20 N -0.281 5.281 21 C -0.461 4.461 22 H 0.101 0.899 23 C 0.008 3.992 24 N -0.840 5.840 25 Si 1.113 2.887 26 H -0.267 1.267 27 H -0.253 1.253 28 H -0.275 1.275 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.030 0.970 37 H 0.087 0.913 38 H 0.394 0.606 39 H 0.416 0.584 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.099 0.901 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 -2.219 7.377 7.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.179 4.179 3 C -0.133 4.133 4 C -0.138 4.138 5 C 0.029 3.971 6 H 0.108 0.892 7 C -0.006 4.006 8 O -0.388 6.388 9 N -0.360 5.360 10 C 0.377 3.623 11 O -0.465 6.465 12 C -0.159 4.159 13 C -0.204 4.204 14 C -0.154 4.154 15 C -0.103 4.103 16 C -0.170 4.170 17 C -0.140 4.140 18 C -0.134 4.134 19 C -0.063 4.063 20 N 0.054 4.946 21 C -0.588 4.588 22 H 0.118 0.882 23 C -0.204 4.204 24 N -0.465 5.465 25 Si 0.931 3.069 26 H -0.192 1.192 27 H -0.177 1.177 28 H -0.200 1.200 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.048 0.952 37 H 0.105 0.895 38 H 0.243 0.757 39 H 0.261 0.739 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.170 0.830 43 H 0.161 0.839 44 H 0.117 0.883 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.597 -3.573 6.746 8.064 hybrid contribution 0.399 1.587 0.816 1.828 sum -2.199 -1.986 7.562 8.122 Atomic orbital electron populations 1.23993 0.95450 1.02651 1.00606 1.22968 0.96536 0.98014 1.00421 1.20736 0.98057 0.96203 0.98289 1.21611 0.97266 0.95604 0.99370 1.21371 0.91847 0.99935 0.83907 0.89170 1.22521 0.92976 0.87617 0.97526 1.86477 1.56506 1.43880 1.51946 1.46694 1.51062 1.08972 1.29292 1.17255 0.78417 0.83993 0.82592 1.90662 1.57527 1.35551 1.62713 1.20708 1.06826 0.89609 0.98736 1.20674 1.06556 0.97111 0.96108 1.18403 1.05873 0.92724 0.98360 1.20565 0.97346 0.99738 0.92620 1.20823 1.02049 0.94166 0.99979 1.21079 1.00800 0.94657 0.97426 1.20196 1.00162 0.98848 0.94236 1.18936 1.01049 0.93427 0.92870 1.40240 1.33497 1.05134 1.15779 1.20586 1.56118 0.81395 1.00656 0.88219 1.28035 0.91359 1.09152 0.91844 1.70708 1.26450 1.22865 1.26523 0.82977 0.77572 0.68414 0.77976 1.19158 1.17719 1.19996 0.86877 0.88334 0.87044 0.91482 0.93847 0.91226 0.87960 0.95170 0.89538 0.75658 0.73929 0.83853 0.84393 0.83013 0.83923 0.88314 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.18 14.32 67.78 0.97 -3.21 16 2 C -0.16 -4.15 9.52 25.65 0.24 -3.91 16 3 C -0.10 -2.82 5.55 29.85 0.17 -2.66 16 4 C -0.10 -2.74 4.46 30.60 0.14 -2.60 16 5 C 0.13 4.25 2.37 44.99 0.11 4.36 16 6 H 0.09 2.94 7.56 -2.39 -0.02 2.93 16 7 C 0.07 1.94 6.87 71.98 0.49 2.44 16 8 O -0.58 -15.29 12.83 -148.98 -1.91 -17.20 16 9 N -0.70 -28.54 4.40 -446.29 -1.96 -30.51 16 10 C 0.59 27.63 7.75 86.51 0.67 28.30 16 11 O -0.58 -28.28 16.51 -4.23 -0.07 -28.35 16 12 C -0.04 -2.24 6.77 39.91 0.27 -1.97 16 13 C -0.18 -8.45 10.55 22.63 0.24 -8.22 16 14 C -0.15 -6.93 6.16 -21.34 -0.13 -7.06 16 15 C -0.08 -3.19 10.06 22.32 0.22 -2.96 16 16 C -0.15 -5.13 9.97 22.03 0.22 -4.92 16 17 C -0.12 -4.47 10.02 22.32 0.22 -4.24 16 18 C -0.11 -5.26 9.01 22.38 0.20 -5.06 16 19 C 0.05 2.54 5.55 39.06 0.22 2.76 16 20 N -0.28 -14.45 2.46 -331.34 -0.82 -15.27 16 21 C -0.46 -22.95 7.51 84.09 0.63 -22.32 16 22 H 0.10 4.88 6.58 -2.91 -0.02 4.86 16 23 C 0.01 0.37 4.35 84.95 0.37 0.74 16 24 N -0.84 -44.41 12.60 21.67 0.27 -44.13 16 25 Si 1.11 41.97 29.97 68.60 2.06 44.02 16 26 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 27 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 28 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 29 H 0.11 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.10 2.05 7.84 -2.91 -0.02 2.03 16 31 H 0.11 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.07 1.88 7.79 -2.39 -0.02 1.87 16 33 H 0.04 1.61 7.76 -2.39 -0.02 1.59 16 34 H 0.07 2.05 7.74 -2.38 -0.02 2.03 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.39 6.53 9.12 -74.06 -0.68 5.85 16 39 H 0.42 17.90 4.52 -92.72 -0.42 17.48 16 40 H 0.14 6.31 8.06 -2.91 -0.02 6.29 16 41 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 43 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 44 H 0.10 4.76 7.25 -2.91 -0.02 4.74 16 45 H 0.27 15.30 7.44 -92.71 -0.69 14.61 16 Total: -1.00 -65.17 377.25 2.82 -62.35 By element: Atomic # 1 Polarization: 59.60 SS G_CDS: 0.00 Total: 59.60 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 5.25 Total: -30.52 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -2.51 Total: -89.91 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.98 Total: -45.54 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.06 Total: 44.02 kcal Total: -65.17 2.82 -62.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.658 kcal (2) G-P(sol) polarization free energy of solvation -65.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds