Wall clock time and date at job start Tue Mar 31 2020 15:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99710 * 2 1 4 4 C 1.53003 * 109.47397 * 124.99738 * 3 2 1 5 5 C 1.52996 * 109.47287 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.46704 * 304.89442 * 5 4 3 7 7 C 1.53000 * 109.46915 * 184.89880 * 5 4 3 8 8 O 1.42896 * 109.46926 * 304.26833 * 7 5 4 9 9 N 1.46499 * 109.47327 * 64.89367 * 5 4 3 10 10 C 1.34779 * 119.99947 * 205.13207 * 9 5 4 11 11 O 1.21660 * 119.99837 * 4.94214 * 10 9 5 12 12 C 1.46886 * 119.99778 * 184.93760 * 10 9 5 13 13 C 1.36122 * 125.43858 * 185.85886 * 12 10 9 14 14 C 1.41696 * 107.75202 * 180.28005 * 13 12 10 15 15 C 1.40020 * 133.35211 * 179.77580 * 14 13 12 16 16 C 1.36580 * 119.83240 * 179.97438 * 15 14 13 17 17 C 1.38855 * 120.59984 * 359.96307 * 16 15 14 18 18 C 1.37848 * 120.63195 * 0.02562 * 17 16 15 19 19 C 1.39090 * 119.81628 * 0.02562 * 18 17 16 20 20 N 1.37831 * 133.16702 * 180.02562 * 19 18 17 21 21 C 1.36894 * 125.61874 * 359.97438 * 20 19 18 22 22 H 1.07997 * 119.99752 * 225.20412 * 21 20 19 23 23 C 1.39008 * 119.99989 * 45.19903 * 21 20 19 24 24 N 1.31350 * 120.00070 * 198.21837 * 23 21 20 25 25 Si 1.86803 * 120.00125 * 18.22342 * 23 21 20 26 26 H 1.48499 * 109.46780 * 264.52494 * 25 23 21 27 27 H 1.48491 * 109.46835 * 24.52283 * 25 23 21 28 28 H 1.48501 * 109.47161 * 144.52343 * 25 23 21 29 29 H 1.07997 * 120.00468 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99574 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00113 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47400 * 4.99778 * 3 2 1 33 33 H 1.08998 * 109.47201 * 244.99632 * 3 2 1 34 34 H 1.08996 * 109.46978 * 59.99510 * 4 3 2 35 35 H 1.09005 * 109.46727 * 299.99728 * 4 3 2 36 36 H 1.08997 * 109.47561 * 64.27077 * 7 5 4 37 37 H 1.09009 * 109.46886 * 184.27332 * 7 5 4 38 38 H 0.96701 * 113.99905 * 180.02562 * 8 7 5 39 39 H 0.96996 * 119.99725 * 25.13665 * 9 5 4 40 40 H 1.08004 * 126.12494 * 0.02562 * 13 12 10 41 41 H 1.08001 * 120.08495 * 359.97438 * 15 14 13 42 42 H 1.07994 * 119.70283 * 179.97438 * 16 15 14 43 43 H 1.07998 * 119.68639 * 180.02562 * 17 16 15 44 44 H 1.08004 * 120.09781 * 179.97438 * 18 17 16 45 45 H 0.97000 * 120.00571 * 174.98660 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3333 1.1817 5 6 3.7994 2.6586 1.1820 6 1 4.2870 2.7970 0.2169 7 6 4.8557 2.6377 2.2887 8 8 4.2277 2.3572 3.5412 9 7 2.8648 3.7614 1.4196 10 6 3.1595 5.0010 0.9802 11 8 4.1569 5.1873 0.3090 12 6 2.2763 6.1269 1.3116 13 6 2.4035 7.3962 0.8365 14 6 1.3621 8.1747 1.3998 15 6 0.9975 9.5214 1.2822 16 6 -0.0860 9.9942 1.9664 17 6 -0.8320 9.1507 2.7789 18 6 -0.4928 7.8211 2.9104 19 6 0.6071 7.3168 2.2243 20 7 1.1820 6.0662 2.1536 21 6 0.7437 4.9489 2.8120 22 1 1.4507 4.3083 3.3182 23 6 -0.6112 4.6389 2.8292 24 7 -1.0827 3.8041 3.7271 25 14 -1.7617 5.4094 1.5753 26 1 -2.4020 6.6126 2.1648 27 1 -0.9887 5.8007 0.3693 28 1 -2.8087 4.4274 1.1951 29 1 -0.5401 0.9352 -0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4026 -0.9313 34 1 3.7399 0.5067 1.0922 35 1 2.4771 1.2358 2.1130 36 1 5.5942 1.8660 2.0717 37 1 5.3486 3.6087 2.3388 38 1 4.8389 2.3289 4.2901 39 1 2.0339 3.5994 1.8932 40 1 3.1645 7.7479 0.1556 41 1 1.5715 10.1847 0.6522 42 1 -0.3651 11.0334 1.8745 43 1 -1.6862 9.5401 3.3129 44 1 -1.0789 7.1728 3.5450 45 1 -2.0374 3.6435 3.7861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590884738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:51 Heat of formation + Delta-G solvation = -9.929696 kcal Electronic energy + Delta-G solvation = -28733.616477 eV Core-core repulsion = 24909.925600 eV Total energy + Delta-G solvation = -3823.690877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.81948 -39.05593 -37.08438 -36.16017 -35.60341 -33.98448 -33.44920 -31.42478 -30.89206 -29.21823 -28.42117 -27.63674 -24.94311 -23.86611 -23.08428 -21.16673 -20.81247 -19.95089 -19.61189 -19.25555 -18.39377 -17.36970 -16.53454 -15.88214 -15.77785 -15.31957 -15.09065 -14.82571 -14.45255 -14.27718 -13.85387 -13.63775 -13.54227 -13.33930 -13.22033 -13.05769 -12.79908 -12.59796 -12.36494 -12.07786 -12.00374 -11.46548 -11.43672 -11.20285 -11.00659 -10.98880 -10.77385 -10.55012 -10.49878 -10.26646 -9.92768 -9.82727 -9.51396 -9.40891 -9.16661 -8.74764 -8.47627 -7.38895 -7.00973 -6.91389 -4.72075 1.58694 2.43964 2.46096 2.82907 2.98449 3.09672 3.17593 3.77132 3.83442 4.06527 4.14686 4.51796 4.57239 4.74799 4.80928 5.14332 5.21834 5.37419 5.45204 5.49925 5.53707 5.63390 5.68730 5.71664 5.84356 5.91074 5.93674 6.00801 6.07094 6.17166 6.22565 6.32414 6.41598 6.50689 6.60184 6.75059 6.77816 6.81998 6.94847 7.07858 7.14909 7.22505 7.32507 7.55014 7.62710 7.73588 7.81351 8.07157 8.27482 8.58794 8.91141 9.00223 10.04142 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011978 B = 0.005155 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.105304 B = 5429.954295 C = 6603.810726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.152 4.152 3 C -0.098 4.098 4 C -0.115 4.115 5 C 0.145 3.855 6 H 0.096 0.904 7 C 0.065 3.935 8 O -0.560 6.560 9 N -0.712 5.712 10 C 0.594 3.406 11 O -0.562 6.562 12 C -0.012 4.012 13 C -0.161 4.161 14 C -0.126 4.126 15 C -0.076 4.076 16 C -0.160 4.160 17 C -0.130 4.130 18 C -0.103 4.103 19 C 0.064 3.936 20 N -0.273 5.273 21 C -0.376 4.376 22 H 0.128 0.872 23 C 0.090 3.910 24 N -0.819 5.819 25 Si 0.868 3.132 26 H -0.247 1.247 27 H -0.253 1.253 28 H -0.281 1.281 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.373 0.627 39 H 0.423 0.577 40 H 0.137 0.863 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 -3.046 -2.779 5.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.170 4.170 3 C -0.135 4.135 4 C -0.152 4.152 5 C 0.039 3.961 6 H 0.114 0.886 7 C -0.014 4.014 8 O -0.365 6.365 9 N -0.371 5.371 10 C 0.383 3.617 11 O -0.442 6.442 12 C -0.126 4.126 13 C -0.188 4.188 14 C -0.131 4.131 15 C -0.095 4.095 16 C -0.180 4.180 17 C -0.150 4.150 18 C -0.123 4.123 19 C -0.050 4.050 20 N 0.062 4.938 21 C -0.503 4.503 22 H 0.145 0.855 23 C -0.126 4.126 24 N -0.447 5.447 25 Si 0.692 3.308 26 H -0.171 1.171 27 H -0.177 1.177 28 H -0.207 1.207 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.219 0.781 39 H 0.269 0.731 40 H 0.155 0.845 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.740 -3.549 -3.355 6.152 hybrid contribution -0.562 0.101 0.214 0.610 sum 3.178 -3.448 -3.141 5.644 Atomic orbital electron populations 1.23880 0.96134 1.01794 1.01228 1.22900 0.95971 0.98232 0.99886 1.20806 0.98625 0.95729 0.98338 1.21678 0.98316 0.95589 0.99651 1.21027 0.90506 0.87177 0.97366 0.88619 1.22635 0.94713 0.99178 0.84913 1.86579 1.38486 1.94490 1.16922 1.46707 1.24573 1.06898 1.58910 1.17229 0.83806 0.82094 0.78537 1.90706 1.27978 1.84900 1.40606 1.20253 0.96296 0.95685 1.00405 1.20460 1.01217 0.91542 1.05576 1.18012 0.98372 0.93793 1.02940 1.20175 0.96878 0.93203 0.99255 1.20353 0.97712 0.98872 1.01018 1.20590 1.00451 0.92848 1.01114 1.20181 0.96010 0.95543 1.00533 1.18451 0.98578 0.85238 1.02686 1.40275 1.18929 1.05750 1.28885 1.19288 0.94535 1.03108 1.33338 0.85483 1.25469 0.97326 0.94281 0.95535 1.69643 1.15782 1.30534 1.28702 0.86924 0.80976 0.79848 0.83056 1.17104 1.17663 1.20671 0.88454 0.88841 0.87741 0.90869 0.91268 0.90971 0.89981 0.93378 0.93280 0.78096 0.73063 0.84470 0.87131 0.87272 0.86989 0.86437 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 14.32 29.01 0.42 -2.21 16 2 C -0.15 -1.99 9.52 -36.03 -0.34 -2.34 16 3 C -0.10 -1.40 5.54 -27.88 -0.15 -1.55 16 4 C -0.11 -1.62 4.47 -26.73 -0.12 -1.74 16 5 C 0.14 2.30 2.41 -67.93 -0.16 2.13 16 6 H 0.10 1.51 7.51 -51.92 -0.39 1.12 16 7 C 0.06 0.92 6.84 37.16 0.25 1.18 16 8 O -0.56 -8.33 12.84 -35.23 -0.45 -8.79 16 9 N -0.71 -13.91 4.27 -55.05 -0.24 -14.14 16 10 C 0.59 13.03 7.73 -12.76 -0.10 12.94 16 11 O -0.56 -12.78 16.48 5.22 0.09 -12.69 16 12 C -0.01 -0.28 6.77 -82.25 -0.56 -0.83 16 13 C -0.16 -3.55 10.55 -39.02 -0.41 -3.97 16 14 C -0.13 -2.77 6.16 -106.89 -0.66 -3.43 16 15 C -0.08 -1.43 10.06 -39.51 -0.40 -1.83 16 16 C -0.16 -2.81 9.97 -39.95 -0.40 -3.21 16 17 C -0.13 -2.43 10.02 -39.50 -0.40 -2.83 16 18 C -0.10 -2.25 6.93 -39.41 -0.27 -2.52 16 19 C 0.06 1.51 5.15 -83.84 -0.43 1.08 16 20 N -0.27 -6.60 2.37 -56.08 -0.13 -6.73 16 21 C -0.38 -9.29 8.00 -15.01 -0.12 -9.41 16 22 H 0.13 3.29 6.76 -52.49 -0.35 2.94 16 23 C 0.09 2.19 4.94 -17.47 -0.09 2.11 16 24 N -0.82 -20.38 13.95 55.50 0.77 -19.61 16 25 Si 0.87 19.70 24.42 -169.99 -4.15 15.55 16 26 H -0.25 -5.39 5.79 56.52 0.33 -5.06 16 27 H -0.25 -6.17 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.10 1.45 7.84 -52.49 -0.41 1.03 16 30 H 0.09 1.09 8.06 -52.48 -0.42 0.66 16 31 H 0.10 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.07 1.23 7.40 -51.93 -0.38 0.84 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.33 7.74 -51.93 -0.40 0.93 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 38 H 0.37 3.83 9.12 45.56 0.42 4.25 16 39 H 0.42 8.93 4.69 -40.82 -0.19 8.74 16 40 H 0.14 2.76 8.06 -52.48 -0.42 2.34 16 41 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 43 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.12 2.62 6.12 -52.48 -0.32 2.29 16 45 H 0.29 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -28.58 370.12 -7.95 -36.53 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -5.48 Total: 20.74 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -3.94 Total: -16.43 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.41 Total: -40.49 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.37 Total: -21.48 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.15 Total: 15.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.58 -7.95 -36.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.600 kcal (2) G-P(sol) polarization free energy of solvation -28.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds