Wall clock time and date at job start Tue Mar 31 2020 15:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99710 * 2 1 4 4 C 1.53003 * 109.47397 * 124.99738 * 3 2 1 5 5 C 1.52996 * 109.47287 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.46704 * 304.89442 * 5 4 3 7 7 C 1.53000 * 109.46915 * 184.89880 * 5 4 3 8 8 O 1.42896 * 109.46926 * 304.26833 * 7 5 4 9 9 N 1.46499 * 109.47327 * 64.89367 * 5 4 3 10 10 C 1.34779 * 119.99947 * 205.13207 * 9 5 4 11 11 O 1.21660 * 119.99837 * 4.94214 * 10 9 5 12 12 C 1.46886 * 119.99778 * 184.93760 * 10 9 5 13 13 C 1.36122 * 125.43858 * 185.85886 * 12 10 9 14 14 C 1.41696 * 107.75202 * 180.28005 * 13 12 10 15 15 C 1.40020 * 133.35211 * 179.77580 * 14 13 12 16 16 C 1.36580 * 119.83240 * 179.97438 * 15 14 13 17 17 C 1.38855 * 120.59984 * 359.96307 * 16 15 14 18 18 C 1.37848 * 120.63195 * 0.02562 * 17 16 15 19 19 C 1.39090 * 119.81628 * 0.02562 * 18 17 16 20 20 N 1.37831 * 133.16702 * 180.02562 * 19 18 17 21 21 C 1.36894 * 125.61874 * 359.97438 * 20 19 18 22 22 H 1.07997 * 119.99752 * 225.20412 * 21 20 19 23 23 C 1.39008 * 119.99989 * 45.19903 * 21 20 19 24 24 N 1.31350 * 120.00070 * 198.21837 * 23 21 20 25 25 Si 1.86803 * 120.00125 * 18.22342 * 23 21 20 26 26 H 1.48499 * 109.46780 * 264.52494 * 25 23 21 27 27 H 1.48491 * 109.46835 * 24.52283 * 25 23 21 28 28 H 1.48501 * 109.47161 * 144.52343 * 25 23 21 29 29 H 1.07997 * 120.00468 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99574 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00113 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47400 * 4.99778 * 3 2 1 33 33 H 1.08998 * 109.47201 * 244.99632 * 3 2 1 34 34 H 1.08996 * 109.46978 * 59.99510 * 4 3 2 35 35 H 1.09005 * 109.46727 * 299.99728 * 4 3 2 36 36 H 1.08997 * 109.47561 * 64.27077 * 7 5 4 37 37 H 1.09009 * 109.46886 * 184.27332 * 7 5 4 38 38 H 0.96701 * 113.99905 * 180.02562 * 8 7 5 39 39 H 0.96996 * 119.99725 * 25.13665 * 9 5 4 40 40 H 1.08004 * 126.12494 * 0.02562 * 13 12 10 41 41 H 1.08001 * 120.08495 * 359.97438 * 15 14 13 42 42 H 1.07994 * 119.70283 * 179.97438 * 16 15 14 43 43 H 1.07998 * 119.68639 * 180.02562 * 17 16 15 44 44 H 1.08004 * 120.09781 * 179.97438 * 18 17 16 45 45 H 0.97000 * 120.00571 * 174.98660 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3333 1.1817 5 6 3.7994 2.6586 1.1820 6 1 4.2870 2.7970 0.2169 7 6 4.8557 2.6377 2.2887 8 8 4.2277 2.3572 3.5412 9 7 2.8648 3.7614 1.4196 10 6 3.1595 5.0010 0.9802 11 8 4.1569 5.1873 0.3090 12 6 2.2763 6.1269 1.3116 13 6 2.4035 7.3962 0.8365 14 6 1.3621 8.1747 1.3998 15 6 0.9975 9.5214 1.2822 16 6 -0.0860 9.9942 1.9664 17 6 -0.8320 9.1507 2.7789 18 6 -0.4928 7.8211 2.9104 19 6 0.6071 7.3168 2.2243 20 7 1.1820 6.0662 2.1536 21 6 0.7437 4.9489 2.8120 22 1 1.4507 4.3083 3.3182 23 6 -0.6112 4.6389 2.8292 24 7 -1.0827 3.8041 3.7271 25 14 -1.7617 5.4094 1.5753 26 1 -2.4020 6.6126 2.1648 27 1 -0.9887 5.8007 0.3693 28 1 -2.8087 4.4274 1.1951 29 1 -0.5401 0.9352 -0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4026 -0.9313 34 1 3.7399 0.5067 1.0922 35 1 2.4771 1.2358 2.1130 36 1 5.5942 1.8660 2.0717 37 1 5.3486 3.6087 2.3388 38 1 4.8389 2.3289 4.2901 39 1 2.0339 3.5994 1.8932 40 1 3.1645 7.7479 0.1556 41 1 1.5715 10.1847 0.6522 42 1 -0.3651 11.0334 1.8745 43 1 -1.6862 9.5401 3.3129 44 1 -1.0789 7.1728 3.5450 45 1 -2.0374 3.6435 3.7861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590884738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:50 Heat of formation + Delta-G solvation = -27.959689 kcal Electronic energy + Delta-G solvation = -28734.398316 eV Core-core repulsion = 24909.925600 eV Total energy + Delta-G solvation = -3824.472716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.49653 -40.59159 -38.44083 -37.76193 -36.76512 -35.57447 -35.02030 -33.13236 -32.26795 -30.79894 -29.93254 -28.93357 -26.74881 -25.26531 -24.42239 -22.81536 -22.27777 -21.41073 -20.96405 -20.67282 -20.13699 -18.67736 -18.05678 -17.60961 -17.20499 -16.73043 -16.48763 -16.27564 -16.09436 -15.82729 -15.38056 -15.08633 -14.93534 -14.87430 -14.71044 -14.52549 -14.42187 -13.98775 -13.83563 -13.66964 -13.34270 -13.17640 -12.80926 -12.57933 -12.49235 -12.43807 -12.29487 -12.01301 -11.93697 -11.65369 -11.54470 -11.32041 -11.16985 -10.89152 -10.45418 -10.26524 -9.99806 -9.05303 -8.84348 -8.61811 -6.60651 -0.04152 0.88737 1.08556 1.16387 1.29834 1.32912 1.37087 1.97967 2.23594 2.30242 2.45992 2.79134 3.13542 3.41760 3.63040 3.92464 3.98253 4.03338 4.05841 4.28633 4.29851 4.34438 4.37327 4.44819 4.54019 4.57713 4.63069 4.67091 4.75822 4.80380 4.81032 4.97765 5.02346 5.11611 5.14213 5.25536 5.29619 5.36792 5.56770 5.68300 5.68645 5.73515 5.80552 5.89775 5.99148 6.05216 6.38106 6.57298 6.77400 6.88796 7.20397 7.24020 8.20762 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011978 B = 0.005155 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.105304 B = 5429.954295 C = 6603.810726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.099 4.099 4 C -0.102 4.102 5 C 0.134 3.866 6 H 0.099 0.901 7 C 0.070 3.930 8 O -0.582 6.582 9 N -0.707 5.707 10 C 0.589 3.411 11 O -0.578 6.578 12 C -0.040 4.040 13 C -0.161 4.161 14 C -0.145 4.145 15 C -0.075 4.075 16 C -0.152 4.152 17 C -0.111 4.111 18 C -0.141 4.141 19 C 0.043 3.957 20 N -0.293 5.293 21 C -0.378 4.378 22 H 0.104 0.896 23 C 0.070 3.930 24 N -0.849 5.849 25 Si 0.910 3.090 26 H -0.230 1.230 27 H -0.282 1.282 28 H -0.274 1.274 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.030 0.970 38 H 0.392 0.608 39 H 0.415 0.585 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.157 0.843 43 H 0.147 0.853 44 H 0.104 0.896 45 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 -1.849 -3.413 5.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.165 4.165 3 C -0.136 4.136 4 C -0.140 4.140 5 C 0.029 3.971 6 H 0.117 0.883 7 C -0.009 4.009 8 O -0.390 6.390 9 N -0.364 5.364 10 C 0.377 3.623 11 O -0.460 6.460 12 C -0.153 4.153 13 C -0.188 4.188 14 C -0.150 4.150 15 C -0.093 4.093 16 C -0.170 4.170 17 C -0.131 4.131 18 C -0.161 4.161 19 C -0.070 4.070 20 N 0.041 4.959 21 C -0.505 4.505 22 H 0.121 0.879 23 C -0.143 4.143 24 N -0.479 5.479 25 Si 0.733 3.267 26 H -0.153 1.153 27 H -0.207 1.207 28 H -0.200 1.200 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.153 0.847 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.241 0.759 39 H 0.259 0.741 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.174 0.826 43 H 0.164 0.836 44 H 0.122 0.878 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.818 -2.367 -3.961 5.990 hybrid contribution -0.523 -0.097 0.409 0.671 sum 3.295 -2.464 -3.552 5.436 Atomic orbital electron populations 1.23975 0.96626 1.01785 1.02106 1.23060 0.95837 0.98602 0.99012 1.20795 0.98259 0.95414 0.99119 1.21599 0.98451 0.95675 0.98237 1.21391 0.90575 0.86722 0.98367 0.88290 1.22583 0.94440 0.99616 0.84249 1.86539 1.40040 1.94452 1.17932 1.46751 1.24704 1.07207 1.57724 1.17238 0.83632 0.82684 0.78705 1.90667 1.28490 1.85242 1.41559 1.20659 0.96568 0.96834 1.01276 1.20767 1.01521 0.91268 1.05292 1.18405 0.98277 0.95319 1.02962 1.20642 0.97380 0.92034 0.99292 1.20882 0.96280 1.00832 0.99043 1.21124 1.00715 0.91466 0.99814 1.20312 0.96633 0.97152 1.02026 1.18929 0.99365 0.85291 1.03379 1.40268 1.19758 1.05935 1.29966 1.19034 0.94320 1.03616 1.33489 0.87901 1.25775 0.97908 0.94490 0.96153 1.69662 1.16387 1.31882 1.29920 0.86335 0.79717 0.80066 0.80554 1.15328 1.20697 1.20008 0.90868 0.86604 0.84702 0.94410 0.89930 0.87396 0.92354 0.89301 0.95175 0.75893 0.74051 0.82901 0.83717 0.82584 0.83552 0.87792 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.68 14.32 67.78 0.97 -4.71 16 2 C -0.15 -3.75 9.52 25.65 0.24 -3.50 16 3 C -0.10 -2.84 5.54 29.85 0.17 -2.68 16 4 C -0.10 -2.84 4.47 30.59 0.14 -2.71 16 5 C 0.13 4.28 2.41 44.99 0.11 4.39 16 6 H 0.10 3.11 7.51 -2.38 -0.02 3.09 16 7 C 0.07 1.96 6.84 71.98 0.49 2.45 16 8 O -0.58 -17.39 12.84 -148.98 -1.91 -19.30 16 9 N -0.71 -29.12 4.27 -446.31 -1.91 -31.03 16 10 C 0.59 26.98 7.73 86.51 0.67 27.64 16 11 O -0.58 -27.00 16.48 -4.22 -0.07 -27.07 16 12 C -0.04 -1.93 6.77 39.91 0.27 -1.66 16 13 C -0.16 -7.18 10.55 22.63 0.24 -6.94 16 14 C -0.14 -6.26 6.16 -21.34 -0.13 -6.39 16 15 C -0.07 -2.56 10.06 22.31 0.22 -2.34 16 16 C -0.15 -4.61 9.97 22.03 0.22 -4.39 16 17 C -0.11 -3.81 10.02 22.33 0.22 -3.58 16 18 C -0.14 -6.08 6.93 22.38 0.16 -5.93 16 19 C 0.04 2.06 5.15 39.06 0.20 2.26 16 20 N -0.29 -14.74 2.37 -331.35 -0.78 -15.52 16 21 C -0.38 -19.75 8.00 84.09 0.67 -19.08 16 22 H 0.10 5.75 6.76 -2.91 -0.02 5.73 16 23 C 0.07 3.56 4.94 84.95 0.42 3.98 16 24 N -0.85 -43.98 13.95 21.67 0.30 -43.68 16 25 Si 0.91 41.85 24.42 68.60 1.68 43.53 16 26 H -0.23 -9.83 5.79 99.48 0.58 -9.25 16 27 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 29 H 0.07 2.32 7.84 -2.91 -0.02 2.30 16 30 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 31 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.04 1.34 7.40 -2.38 -0.02 1.33 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.06 1.93 7.74 -2.38 -0.02 1.91 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 37 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.39 7.93 9.12 -74.06 -0.68 7.25 16 39 H 0.42 18.82 4.69 -92.71 -0.43 18.38 16 40 H 0.15 6.12 8.06 -2.91 -0.02 6.10 16 41 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 42 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 43 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 44 H 0.10 4.68 6.12 -2.91 -0.02 4.66 16 45 H 0.29 14.02 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -65.34 370.12 2.36 -62.98 By element: Atomic # 1 Polarization: 53.48 SS G_CDS: -0.22 Total: 53.26 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 5.28 Total: -23.17 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -2.39 Total: -90.23 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -1.98 Total: -46.37 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.68 Total: 43.53 kcal Total: -65.34 2.36 -62.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.020 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds