Wall clock time and date at job start Tue Mar 31 2020 16:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47064 * 2 1 4 4 C 1.50696 * 109.47128 * 240.00176 * 2 1 3 5 5 H 1.08004 * 119.99648 * 241.19816 * 4 2 1 6 6 C 1.37871 * 120.00321 * 61.19570 * 4 2 1 7 7 N 1.31511 * 120.00418 * 194.18733 * 6 4 2 8 8 Si 1.86803 * 119.99884 * 14.18384 * 6 4 2 9 9 H 1.48504 * 109.46851 * 84.54136 * 8 6 4 10 10 H 1.48503 * 109.47308 * 204.53940 * 8 6 4 11 11 H 1.48498 * 109.47282 * 324.54380 * 8 6 4 12 12 C 1.53005 * 109.47141 * 119.99805 * 2 1 3 13 13 N 1.46495 * 109.47297 * 300.00475 * 12 2 1 14 14 C 1.33942 * 124.21696 * 89.97014 * 13 12 2 15 15 O 1.21536 * 123.80315 * 0.06022 * 14 13 12 16 16 N 1.34844 * 112.39426 * 180.02562 * 14 13 12 17 17 C 1.46335 * 106.17414 * 359.97438 * 16 14 13 18 18 C 1.53400 * 111.35582 * 239.69230 * 17 16 14 19 19 C 1.54561 * 102.14054 * 263.73824 * 18 17 16 20 20 C 1.51459 * 105.22137 * 334.51934 * 19 18 17 21 21 C 1.38433 * 130.36210 * 196.64338 * 20 19 18 22 22 C 1.38091 * 120.29839 * 180.32964 * 21 20 19 23 23 C 1.38257 * 119.88584 * 359.51819 * 22 21 20 24 24 C 1.38065 * 119.94648 * 0.49104 * 23 22 21 25 25 C 1.38480 * 109.78297 * 16.73395 * 20 19 18 26 26 C 1.35094 * 124.21001 * 269.99796 * 13 12 2 27 27 O 1.21237 * 127.37460 * 0.02562 * 26 13 12 28 28 H 1.08999 * 109.47332 * 309.48628 * 1 2 3 29 29 H 1.09001 * 109.47253 * 69.48735 * 1 2 3 30 30 H 1.09000 * 109.47381 * 189.48780 * 1 2 3 31 31 H 1.09001 * 109.47136 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47434 * 300.00151 * 3 2 1 33 33 H 1.08998 * 109.47267 * 59.99917 * 3 2 1 34 34 H 0.97008 * 120.00453 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47053 * 179.97438 * 12 2 1 36 36 H 1.09007 * 109.46693 * 60.00244 * 12 2 1 37 37 H 0.96993 * 126.91915 * 180.02562 * 16 14 13 38 38 H 1.09000 * 110.87105 * 145.57315 * 18 17 16 39 39 H 1.08998 * 110.86634 * 21.89541 * 18 17 16 40 40 H 1.09010 * 110.28764 * 215.58550 * 19 18 17 41 41 H 1.08995 * 110.37547 * 93.50306 * 19 18 17 42 42 H 1.08005 * 119.84835 * 0.04906 * 21 20 19 43 43 H 1.07996 * 120.06096 * 179.73351 * 22 21 20 44 44 H 1.08000 * 120.02299 * 180.24556 * 23 22 21 45 45 H 1.08009 * 119.83524 * 179.72870 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6372 -1.5996 -1.1314 6 6 1.7198 -0.2251 -2.4825 7 7 1.9096 -0.9763 -3.5452 8 14 1.0265 1.4994 -2.6696 9 1 2.1416 2.4790 -2.7138 10 1 0.2430 1.5841 -3.9283 11 1 0.1438 1.8059 -1.5155 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 0.3960 -0.3148 3.0601 15 8 -0.3723 -1.1803 2.6889 16 7 0.1813 0.4671 4.1375 17 6 1.3361 1.3613 4.2287 18 6 2.0730 1.1877 5.5629 19 6 1.4693 2.3249 6.4180 20 6 1.0067 3.3684 5.4225 21 6 0.6786 4.7005 5.6074 22 6 0.2692 5.4721 4.5378 23 6 0.1960 4.9150 3.2745 24 6 0.5224 3.5866 3.0871 25 6 0.9287 2.8082 4.1585 26 6 2.2106 0.9724 3.0656 27 8 3.2772 1.4563 2.7527 28 1 -0.3634 0.6535 0.7931 29 1 -0.3634 0.3601 -0.9625 30 1 -0.3634 -1.0136 0.1694 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6900 -0.6348 -4.4262 35 1 3.1300 -0.7216 1.2491 36 1 1.6767 -1.7490 1.2492 37 1 -0.5840 0.4415 4.7327 38 1 3.1465 1.3263 5.4345 39 1 1.8559 0.2142 6.0025 40 1 2.2277 2.7436 7.0797 41 1 0.6242 1.9554 6.9987 42 1 0.7387 5.1371 6.5934 43 1 0.0100 6.5098 4.6871 44 1 -0.1201 5.5174 2.4357 45 1 0.4603 3.1521 2.1002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591422566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:22 Heat of formation + Delta-G solvation = 8.692337 kcal Electronic energy + Delta-G solvation = -29775.998313 eV Core-core repulsion = 25953.114948 eV Total energy + Delta-G solvation = -3822.883365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.69816 -39.95138 -38.29981 -37.02582 -36.11328 -34.91861 -33.14636 -31.57945 -31.17866 -29.31715 -27.65682 -26.59699 -26.27163 -24.86201 -23.26568 -23.01318 -21.56871 -21.33044 -20.47692 -18.93284 -17.79172 -17.13018 -16.64768 -16.11628 -15.96315 -15.59271 -15.42063 -15.24037 -14.97307 -14.78406 -14.45001 -14.00462 -13.62381 -13.55326 -13.16415 -13.05817 -12.87609 -12.77594 -12.30277 -12.24078 -12.14031 -11.88802 -11.72982 -11.64377 -11.16463 -11.00223 -10.96451 -10.74975 -10.25117 -10.10867 -9.90503 -9.83367 -9.51913 -9.36140 -9.10882 -9.04712 -8.87586 -8.52508 -8.40372 -6.12230 -4.08958 0.96399 1.15395 1.78718 2.55781 3.19053 3.29081 3.29968 3.37179 3.41922 3.50652 3.78742 4.13779 4.24328 4.40153 4.62806 4.68374 4.80044 4.89727 4.97928 5.19488 5.23394 5.32694 5.35574 5.41894 5.49546 5.65002 5.69304 5.83048 5.84295 5.90929 6.00124 6.13066 6.18141 6.27481 6.30508 6.43113 6.47988 6.61405 6.70021 6.71117 6.76655 6.85546 7.05007 7.22634 7.34831 7.54291 7.60642 7.76706 8.36321 8.45682 8.90528 9.52580 11.00635 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.004811 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.992699 B = 5818.638069 C = 6690.020688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.026 3.974 3 C -0.142 4.142 4 C -0.511 4.511 5 H 0.077 0.923 6 C 0.079 3.921 7 N -0.890 5.890 8 Si 0.882 3.118 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.251 1.251 12 C 0.137 3.863 13 N -0.567 5.567 14 C 0.702 3.298 15 O -0.530 6.530 16 N -0.721 5.721 17 C 0.159 3.841 18 C -0.115 4.115 19 C -0.080 4.080 20 C -0.078 4.078 21 C -0.112 4.112 22 C -0.104 4.104 23 C -0.119 4.119 24 C -0.078 4.078 25 C -0.100 4.100 26 C 0.533 3.467 27 O -0.455 6.455 28 H 0.013 0.987 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.021 0.979 34 H 0.264 0.736 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.435 0.565 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 10.527 22.376 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.025 3.975 3 C -0.198 4.198 4 C -0.549 4.549 5 H 0.095 0.905 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.177 1.177 12 C 0.018 3.982 13 N -0.312 5.312 14 C 0.403 3.597 15 O -0.403 6.403 16 N -0.385 5.385 17 C 0.068 3.932 18 C -0.153 4.153 19 C -0.117 4.117 20 C -0.079 4.079 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.137 4.137 24 C -0.097 4.097 25 C -0.102 4.102 26 C 0.319 3.681 27 O -0.324 6.324 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.279 0.721 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.579 10.185 21.671 24.084 hybrid contribution -0.741 1.100 -0.197 1.341 sum -3.320 11.284 21.474 24.485 Atomic orbital electron populations 1.22237 0.97280 1.00373 0.99225 1.18840 0.92974 0.92336 0.93372 1.22355 1.01288 0.98143 0.98054 1.20635 1.34056 1.12337 0.87891 0.90462 1.24905 0.94517 0.97168 0.95767 1.69943 1.48211 1.35800 0.98736 0.87333 0.79405 0.85809 0.75950 1.21295 1.23337 1.17663 1.22055 0.99469 0.96354 0.80350 1.46763 1.20465 1.35033 1.28983 1.16025 0.81790 0.81893 0.79990 1.91007 1.47867 1.33620 1.67762 1.45481 1.24016 1.37516 1.31503 1.20021 0.87132 0.88904 0.97155 1.22505 1.00935 1.00308 0.91554 1.21120 1.00944 0.93029 0.96575 1.20598 0.98347 0.94326 0.94622 1.20557 1.00704 0.92479 0.99280 1.21128 0.98707 0.99807 0.92613 1.21070 1.00405 0.94644 0.97621 1.20783 0.96655 0.93876 0.98382 1.19870 1.02777 0.92760 0.94777 1.20255 0.85509 0.79142 0.83207 1.90787 1.19339 1.54617 1.67635 0.96764 0.92959 0.92622 0.92467 0.94197 0.96019 0.92566 0.89302 0.88953 0.72078 0.88458 0.88632 0.89564 0.89538 0.85862 0.85526 0.85396 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 6.51 37.16 0.24 -2.86 16 2 C 0.03 0.62 0.57 -155.66 -0.09 0.53 16 3 C -0.14 -3.21 6.72 37.16 0.25 -2.96 16 4 C -0.51 -14.05 8.62 -34.44 -0.30 -14.34 16 5 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 6 C 0.08 2.27 5.32 -17.82 -0.09 2.17 16 7 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 8 Si 0.88 22.20 22.79 -169.99 -3.87 18.32 16 9 H -0.29 -7.14 7.10 56.52 0.40 -6.74 16 10 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 11 H -0.25 -5.93 4.65 56.52 0.26 -5.67 16 12 C 0.14 2.78 4.67 -4.04 -0.02 2.76 16 13 N -0.57 -10.07 2.17 -120.89 -0.26 -10.34 16 14 C 0.70 11.84 7.23 -87.60 -0.63 11.21 16 15 O -0.53 -10.56 16.11 5.33 0.09 -10.47 16 16 N -0.72 -8.98 5.93 -54.85 -0.33 -9.31 16 17 C 0.16 1.99 1.15 -134.15 -0.15 1.84 16 18 C -0.11 -1.03 6.34 -25.70 -0.16 -1.20 16 19 C -0.08 -0.57 6.78 -26.69 -0.18 -0.76 16 20 C -0.08 -0.77 6.15 -104.09 -0.64 -1.41 16 21 C -0.11 -0.99 10.03 -39.56 -0.40 -1.38 16 22 C -0.10 -0.95 10.05 -39.63 -0.40 -1.35 16 23 C -0.12 -1.32 10.04 -39.64 -0.40 -1.71 16 24 C -0.08 -1.06 9.81 -39.54 -0.39 -1.44 16 25 C -0.10 -1.25 5.36 -104.53 -0.56 -1.81 16 26 C 0.53 8.77 5.12 -10.88 -0.06 8.71 16 27 O -0.46 -8.48 16.90 5.59 0.09 -8.38 16 28 H 0.01 0.29 6.97 -51.93 -0.36 -0.07 16 29 H 0.05 1.26 4.30 -51.93 -0.22 1.04 16 30 H 0.05 1.32 7.57 -51.93 -0.39 0.92 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.04 0.94 2.26 -51.93 -0.12 0.83 16 33 H 0.02 0.44 5.03 -51.93 -0.26 0.18 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.09 1.77 8.02 -51.93 -0.42 1.35 16 36 H 0.09 1.89 7.87 -51.92 -0.41 1.48 16 37 H 0.44 4.22 8.96 -40.82 -0.37 3.85 16 38 H 0.10 0.92 7.94 -51.93 -0.41 0.50 16 39 H 0.10 0.71 8.07 -51.93 -0.42 0.29 16 40 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.12 1.87 6.90 -52.48 -0.36 1.51 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -33.24 345.97 -8.24 -41.48 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.97 Total: 3.76 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -3.98 Total: -4.01 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.19 Total: -45.91 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.18 Total: -18.86 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -3.87 Total: 18.32 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.24 -8.24 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591422566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.169 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds