Wall clock time and date at job start Tue Mar 31 2020 16:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47064 * 2 1 4 4 C 1.50696 * 109.47128 * 240.00176 * 2 1 3 5 5 H 1.08004 * 119.99648 * 241.19816 * 4 2 1 6 6 C 1.37871 * 120.00321 * 61.19570 * 4 2 1 7 7 N 1.31511 * 120.00418 * 194.18733 * 6 4 2 8 8 Si 1.86803 * 119.99884 * 14.18384 * 6 4 2 9 9 H 1.48504 * 109.46851 * 84.54136 * 8 6 4 10 10 H 1.48503 * 109.47308 * 204.53940 * 8 6 4 11 11 H 1.48498 * 109.47282 * 324.54380 * 8 6 4 12 12 C 1.53005 * 109.47141 * 119.99805 * 2 1 3 13 13 N 1.46495 * 109.47297 * 300.00475 * 12 2 1 14 14 C 1.33942 * 124.21696 * 89.97014 * 13 12 2 15 15 O 1.21536 * 123.80315 * 0.06022 * 14 13 12 16 16 N 1.34844 * 112.39426 * 180.02562 * 14 13 12 17 17 C 1.46335 * 106.17414 * 359.97438 * 16 14 13 18 18 C 1.53400 * 111.35582 * 239.69230 * 17 16 14 19 19 C 1.54561 * 102.14054 * 263.73824 * 18 17 16 20 20 C 1.51459 * 105.22137 * 334.51934 * 19 18 17 21 21 C 1.38433 * 130.36210 * 196.64338 * 20 19 18 22 22 C 1.38091 * 120.29839 * 180.32964 * 21 20 19 23 23 C 1.38257 * 119.88584 * 359.51819 * 22 21 20 24 24 C 1.38065 * 119.94648 * 0.49104 * 23 22 21 25 25 C 1.38480 * 109.78297 * 16.73395 * 20 19 18 26 26 C 1.35094 * 124.21001 * 269.99796 * 13 12 2 27 27 O 1.21237 * 127.37460 * 0.02562 * 26 13 12 28 28 H 1.08999 * 109.47332 * 309.48628 * 1 2 3 29 29 H 1.09001 * 109.47253 * 69.48735 * 1 2 3 30 30 H 1.09000 * 109.47381 * 189.48780 * 1 2 3 31 31 H 1.09001 * 109.47136 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47434 * 300.00151 * 3 2 1 33 33 H 1.08998 * 109.47267 * 59.99917 * 3 2 1 34 34 H 0.97008 * 120.00453 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47053 * 179.97438 * 12 2 1 36 36 H 1.09007 * 109.46693 * 60.00244 * 12 2 1 37 37 H 0.96993 * 126.91915 * 180.02562 * 16 14 13 38 38 H 1.09000 * 110.87105 * 145.57315 * 18 17 16 39 39 H 1.08998 * 110.86634 * 21.89541 * 18 17 16 40 40 H 1.09010 * 110.28764 * 215.58550 * 19 18 17 41 41 H 1.08995 * 110.37547 * 93.50306 * 19 18 17 42 42 H 1.08005 * 119.84835 * 0.04906 * 21 20 19 43 43 H 1.07996 * 120.06096 * 179.73351 * 22 21 20 44 44 H 1.08000 * 120.02299 * 180.24556 * 23 22 21 45 45 H 1.08009 * 119.83524 * 179.72870 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6372 -1.5996 -1.1314 6 6 1.7198 -0.2251 -2.4825 7 7 1.9096 -0.9763 -3.5452 8 14 1.0265 1.4994 -2.6696 9 1 2.1416 2.4790 -2.7138 10 1 0.2430 1.5841 -3.9283 11 1 0.1438 1.8059 -1.5155 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 0.3960 -0.3148 3.0601 15 8 -0.3723 -1.1803 2.6889 16 7 0.1813 0.4671 4.1375 17 6 1.3361 1.3613 4.2287 18 6 2.0730 1.1877 5.5629 19 6 1.4693 2.3249 6.4180 20 6 1.0067 3.3684 5.4225 21 6 0.6786 4.7005 5.6074 22 6 0.2692 5.4721 4.5378 23 6 0.1960 4.9150 3.2745 24 6 0.5224 3.5866 3.0871 25 6 0.9287 2.8082 4.1585 26 6 2.2106 0.9724 3.0656 27 8 3.2772 1.4563 2.7527 28 1 -0.3634 0.6535 0.7931 29 1 -0.3634 0.3601 -0.9625 30 1 -0.3634 -1.0136 0.1694 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6900 -0.6348 -4.4262 35 1 3.1300 -0.7216 1.2491 36 1 1.6767 -1.7490 1.2492 37 1 -0.5840 0.4415 4.7327 38 1 3.1465 1.3263 5.4345 39 1 1.8559 0.2142 6.0025 40 1 2.2277 2.7436 7.0797 41 1 0.6242 1.9554 6.9987 42 1 0.7387 5.1371 6.5934 43 1 0.0100 6.5098 4.6871 44 1 -0.1201 5.5174 2.4357 45 1 0.4603 3.1521 2.1002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591422566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:21 Heat of formation + Delta-G solvation = -13.884650 kcal Electronic energy + Delta-G solvation = -29776.977325 eV Core-core repulsion = 25953.114948 eV Total energy + Delta-G solvation = -3823.862377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.91469 -40.88207 -39.66094 -38.52026 -37.47572 -36.14434 -34.53421 -33.50809 -32.05579 -30.05513 -28.87353 -28.21520 -27.88991 -27.00709 -24.43121 -23.81355 -22.93489 -22.04195 -21.60856 -20.63768 -19.04134 -18.43666 -18.16299 -17.85286 -17.13612 -16.92869 -16.60389 -16.44507 -16.20597 -15.95166 -15.38802 -15.22650 -15.06724 -14.86921 -14.75131 -14.52579 -14.32338 -14.10813 -13.83209 -13.80116 -13.16350 -12.99308 -12.83680 -12.77793 -12.57790 -12.43292 -12.28926 -12.09111 -11.94837 -11.87052 -11.76932 -11.21081 -11.15981 -11.07520 -10.66107 -10.58444 -10.29717 -9.88578 -9.61789 -8.36838 -6.36476 0.15503 0.38807 0.50762 1.25896 1.27268 1.28959 1.38699 1.94020 2.09585 2.26419 2.66755 2.88474 2.98478 3.27235 3.34904 3.85514 3.94796 3.96977 3.98702 4.02091 4.21793 4.24367 4.30663 4.42454 4.46173 4.52230 4.58967 4.62490 4.68531 4.75258 4.79508 4.81449 4.84542 4.89060 5.04386 5.09401 5.13654 5.15283 5.29721 5.44308 5.52713 5.53802 5.56989 5.65757 5.79200 5.99543 6.06005 6.21966 6.34256 6.65721 7.08977 7.27858 8.79537 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.004811 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.992699 B = 5818.638069 C = 6690.020688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.024 3.976 3 C -0.133 4.133 4 C -0.511 4.511 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.935 5.935 8 Si 0.933 3.067 9 H -0.281 1.281 10 H -0.306 1.306 11 H -0.229 1.229 12 C 0.145 3.855 13 N -0.575 5.575 14 C 0.699 3.301 15 O -0.566 6.566 16 N -0.694 5.694 17 C 0.166 3.834 18 C -0.112 4.112 19 C -0.071 4.071 20 C -0.073 4.073 21 C -0.108 4.108 22 C -0.099 4.099 23 C -0.133 4.133 24 C -0.109 4.109 25 C -0.127 4.127 26 C 0.527 3.473 27 O -0.482 6.482 28 H 0.028 0.972 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.033 0.967 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.451 0.549 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.159 0.841 43 H 0.157 0.843 44 H 0.135 0.865 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 13.293 26.500 29.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.022 3.978 3 C -0.190 4.190 4 C -0.549 4.549 5 H 0.064 0.936 6 C -0.169 4.169 7 N -0.574 5.574 8 Si 0.763 3.237 9 H -0.208 1.208 10 H -0.235 1.235 11 H -0.154 1.154 12 C 0.025 3.975 13 N -0.320 5.320 14 C 0.400 3.600 15 O -0.441 6.441 16 N -0.360 5.360 17 C 0.075 3.925 18 C -0.150 4.150 19 C -0.108 4.108 20 C -0.074 4.074 21 C -0.126 4.126 22 C -0.116 4.116 23 C -0.151 4.151 24 C -0.128 4.128 25 C -0.128 4.128 26 C 0.315 3.685 27 O -0.353 6.353 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.298 0.702 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.176 0.824 43 H 0.174 0.826 44 H 0.153 0.847 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.440 12.985 25.867 29.148 hybrid contribution -0.426 0.235 -1.432 1.512 sum -3.866 13.220 24.436 28.050 Atomic orbital electron populations 1.22076 0.96842 1.00019 0.99013 1.18788 0.93136 0.92759 0.93074 1.22220 1.00793 0.97444 0.98505 1.20888 1.32924 1.11438 0.89686 0.93575 1.25618 0.95236 1.00576 0.95509 1.70060 1.50327 1.37674 0.99333 0.86483 0.79289 0.81475 0.76441 1.20807 1.23491 1.15399 1.21641 0.99335 0.95906 0.80658 1.46714 1.21272 1.35546 1.28425 1.16118 0.81116 0.82005 0.80727 1.90986 1.48805 1.35347 1.68988 1.45341 1.24553 1.36085 1.29989 1.20183 0.86179 0.89112 0.96985 1.22620 1.00373 1.02484 0.89523 1.21207 1.02419 0.91271 0.95867 1.20958 0.97189 0.95276 0.93954 1.20996 0.98992 0.91885 1.00712 1.21519 0.97198 1.01248 0.91675 1.21252 1.00739 0.93863 0.99198 1.20744 0.99201 0.95367 0.97443 1.19909 1.04576 0.92406 0.95958 1.20992 0.85471 0.78137 0.83942 1.90763 1.20649 1.55226 1.68627 0.95295 0.94000 0.93657 0.93163 0.94886 0.94242 0.92470 0.89374 0.89697 0.70160 0.88829 0.86670 0.87066 0.86873 0.82365 0.82569 0.84717 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 6.51 71.98 0.47 -5.25 16 2 C 0.02 1.15 0.57 -52.93 -0.03 1.12 16 3 C -0.13 -6.06 6.72 71.98 0.48 -5.57 16 4 C -0.51 -29.17 8.62 25.60 0.22 -28.95 16 5 H 0.05 2.85 7.99 -2.91 -0.02 2.83 16 6 C 0.03 1.72 5.32 84.65 0.45 2.17 16 7 N -0.93 -58.79 13.96 21.44 0.30 -58.49 16 8 Si 0.93 46.38 22.79 68.60 1.56 47.94 16 9 H -0.28 -13.68 7.10 99.48 0.71 -12.98 16 10 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16 11 H -0.23 -10.52 4.65 99.48 0.46 -10.06 16 12 C 0.15 6.10 4.67 86.38 0.40 6.50 16 13 N -0.57 -20.47 2.17 -773.35 -1.67 -22.14 16 14 C 0.70 23.25 7.23 179.29 1.30 24.55 16 15 O -0.57 -22.60 16.11 -3.83 -0.06 -22.66 16 16 N -0.69 -16.01 5.93 -445.69 -2.64 -18.65 16 17 C 0.17 3.83 1.15 2.18 0.00 3.83 16 18 C -0.11 -1.62 6.34 31.26 0.20 -1.42 16 19 C -0.07 -0.65 6.78 30.62 0.21 -0.44 16 20 C -0.07 -1.14 6.15 -19.52 -0.12 -1.26 16 21 C -0.11 -1.36 10.03 22.28 0.22 -1.14 16 22 C -0.10 -1.41 10.05 22.24 0.22 -1.18 16 23 C -0.13 -2.68 10.04 22.23 0.22 -2.46 16 24 C -0.11 -2.84 9.81 22.30 0.22 -2.62 16 25 C -0.13 -2.89 5.36 -19.81 -0.11 -3.00 16 26 C 0.53 17.06 5.12 87.58 0.45 17.51 16 27 O -0.48 -17.97 16.90 -2.90 -0.05 -18.02 16 28 H 0.03 1.23 6.97 -2.39 -0.02 1.22 16 29 H 0.04 2.02 4.30 -2.39 -0.01 2.01 16 30 H 0.04 2.18 7.57 -2.39 -0.02 2.17 16 31 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.03 1.54 2.26 -2.39 -0.01 1.54 16 33 H 0.04 1.64 5.03 -2.39 -0.01 1.62 16 34 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 35 H 0.09 3.65 8.02 -2.39 -0.02 3.63 16 36 H 0.08 3.64 7.87 -2.38 -0.02 3.62 16 37 H 0.45 7.51 8.96 -92.71 -0.83 6.68 16 38 H 0.09 1.49 7.94 -2.39 -0.02 1.47 16 39 H 0.11 1.24 8.07 -2.39 -0.02 1.22 16 40 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 41 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 44 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.09 2.81 6.90 -2.91 -0.02 2.79 16 Total: -1.00 -75.72 345.97 2.21 -73.51 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -0.04 Total: 16.14 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 4.81 Total: 2.39 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -4.02 Total: -99.29 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.11 Total: -40.69 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.56 Total: 47.94 kcal Total: -75.72 2.21 -73.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591422566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.623 kcal (2) G-P(sol) polarization free energy of solvation -75.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds