Wall clock time and date at job start Tue Mar 31 2020 16:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47427 * 2 1 4 4 C 1.47204 * 109.47002 * 240.00022 * 2 1 3 5 5 N 2.60800 * 109.47084 * 239.99977 * 2 1 3 6 6 C 1.50704 * 109.47216 * 120.00225 * 2 1 3 7 7 C 1.38360 * 119.85322 * 180.02562 * 6 2 1 8 8 C 1.37956 * 120.14202 * 179.97438 * 7 6 2 9 9 C 1.39574 * 119.85351 * 0.02562 * 8 7 6 10 10 C 1.47851 * 120.14250 * 179.97438 * 9 8 7 11 11 O 1.21554 * 120.00018 * 335.55108 * 10 9 8 12 12 N 1.34776 * 119.99856 * 155.54803 * 10 9 8 13 13 C 1.47472 * 125.63030 * 354.23006 * 12 10 9 14 14 C 1.54906 * 104.81188 * 204.04692 * 13 12 10 15 15 C 1.55155 * 101.61654 * 323.04739 * 14 13 12 16 16 O 1.42903 * 110.71943 * 277.11483 * 15 14 13 17 17 C 1.50705 * 110.72109 * 154.02294 * 15 14 13 18 18 H 1.07998 * 119.99658 * 0.02562 * 17 15 14 19 19 C 1.37875 * 119.99857 * 179.97438 * 17 15 14 20 20 N 1.31513 * 120.00399 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99836 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47243 * 59.99583 * 21 19 17 23 23 H 1.48503 * 109.47443 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47382 * 300.00078 * 21 19 17 25 25 C 1.47026 * 125.64597 * 174.20826 * 12 10 9 26 26 C 1.39575 * 119.71291 * 0.25760 * 9 8 7 27 27 C 1.37959 * 119.85224 * 359.46874 * 26 9 8 28 28 H 1.09003 * 109.46845 * 299.99889 * 1 2 3 29 29 H 1.08993 * 109.46994 * 59.99540 * 1 2 3 30 30 H 1.08995 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47648 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47442 * 300.00130 * 3 2 1 33 33 H 1.08999 * 109.47310 * 59.99814 * 3 2 1 34 34 H 1.07995 * 119.92910 * 359.96867 * 7 6 2 35 35 H 1.08000 * 120.07379 * 180.02562 * 8 7 6 36 36 H 1.09002 * 110.34139 * 85.22914 * 13 12 10 37 37 H 1.08993 * 110.40525 * 322.89682 * 13 12 10 38 38 H 1.08999 * 111.00532 * 204.95159 * 14 13 12 39 39 H 1.09005 * 111.00166 * 81.13493 * 14 13 12 40 40 H 0.96702 * 113.99954 * 180.02562 * 16 15 14 41 41 H 0.97003 * 120.00235 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.88131 * 59.57865 * 25 12 10 43 43 H 1.08998 * 110.00592 * 298.48511 * 25 12 10 44 44 H 1.07999 * 120.06916 * 179.72704 * 26 9 8 45 45 H 1.07992 * 119.92985 * 180.27843 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 6 2.0324 -0.7105 1.2305 7 6 3.3933 -0.8347 1.4466 8 6 3.8598 -1.4834 2.5713 9 6 2.9554 -2.0155 3.4917 10 6 3.4483 -2.7125 4.6988 11 8 4.5545 -3.2162 4.7007 12 7 2.6710 -2.7893 5.7972 13 6 1.3663 -2.1250 5.9745 14 6 1.1934 -1.9949 7.5084 15 6 1.8221 -3.3227 8.0074 16 8 0.8756 -4.3906 7.9304 17 6 2.3394 -3.1719 9.4148 18 1 2.2406 -2.2268 9.9280 19 6 2.9378 -4.2408 10.0476 20 7 3.0567 -5.3921 9.4232 21 14 3.5783 -4.0541 11.7923 22 1 2.4578 -3.6846 12.6942 23 1 4.1720 -5.3389 12.2419 24 1 4.6138 -2.9903 11.8283 25 6 2.9831 -3.5495 7.0163 26 6 1.5838 -1.8919 3.2646 27 6 1.1306 -1.2358 2.1388 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 4.0920 -0.4230 0.7334 35 1 4.9223 -1.5794 2.7391 36 1 0.5690 -2.7374 5.5534 37 1 1.3752 -1.1397 5.5087 38 1 0.1393 -1.9357 7.7791 39 1 1.7421 -1.1346 7.8917 40 1 1.2190 -5.2430 8.2313 41 1 3.4780 -6.1440 9.8682 42 1 3.9161 -3.1888 7.4494 43 1 3.0689 -4.6106 6.7824 44 1 0.8790 -2.3053 3.9707 45 1 0.0696 -1.1356 1.9641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:40 Heat of formation + Delta-G solvation = -27.367221 kcal Electronic energy + Delta-G solvation = -27574.187383 eV Core-core repulsion = 23749.740358 eV Total energy + Delta-G solvation = -3824.447025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.52298 -39.29209 -37.52381 -36.89008 -35.05292 -34.42470 -32.20539 -31.41670 -30.64795 -29.78015 -28.02700 -27.74310 -25.60349 -24.39928 -23.42834 -22.28063 -21.71696 -19.80216 -19.33270 -17.91976 -17.32525 -17.04664 -15.98361 -15.75786 -15.45028 -14.93012 -14.86136 -14.63670 -14.31821 -14.15902 -13.97114 -13.69407 -13.41199 -13.19990 -13.16223 -12.93707 -12.82538 -12.62115 -12.41579 -12.40672 -12.14259 -12.02229 -11.84186 -11.61067 -11.48472 -11.26677 -11.11599 -10.99367 -10.79734 -10.62554 -10.55884 -10.22234 -9.53478 -9.39145 -9.09126 -8.93697 -8.70203 -8.37235 -7.96750 -6.33298 -4.42039 0.75987 1.24746 2.44497 2.45537 2.98264 3.19908 3.26049 3.27572 3.48820 3.54369 3.87566 4.14170 4.23664 4.34046 4.46358 4.74997 4.78946 4.84218 4.95588 5.10587 5.17250 5.25447 5.26687 5.31377 5.33936 5.41143 5.59897 5.61164 5.63493 5.70615 5.77370 5.87481 5.91947 6.02641 6.20521 6.25895 6.34155 6.43612 6.68332 6.71939 6.78465 6.90594 7.21542 7.23157 7.31010 7.69351 7.94232 8.11164 8.58270 8.63913 9.26682 9.38357 10.74518 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027767 B = 0.002588 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.159448 B =10815.832742 C =11165.188744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.078 3.922 3 C -0.139 4.139 4 C 0.217 3.783 5 N -0.428 5.428 6 C -0.072 4.072 7 C -0.116 4.116 8 C -0.063 4.063 9 C -0.111 4.111 10 C 0.558 3.442 11 O -0.546 6.546 12 N -0.603 5.603 13 C 0.097 3.903 14 C -0.120 4.120 15 C 0.249 3.751 16 O -0.586 6.586 17 C -0.538 4.538 18 H 0.067 0.933 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.100 3.900 26 C -0.095 4.095 27 C -0.116 4.116 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.387 0.613 41 H 0.272 0.728 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.145 0.855 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 13.069 -14.655 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.075 3.925 3 C -0.198 4.198 4 C -0.102 4.102 5 N -0.102 5.102 6 C -0.074 4.074 7 C -0.135 4.135 8 C -0.081 4.081 9 C -0.114 4.114 10 C 0.346 3.654 11 O -0.425 6.425 12 N -0.335 5.335 13 C -0.026 4.026 14 C -0.158 4.158 15 C 0.209 3.791 16 O -0.397 6.397 17 C -0.577 4.577 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.021 4.021 26 C -0.113 4.113 27 C -0.134 4.134 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.239 0.761 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.163 0.837 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.698 12.248 -16.316 21.183 hybrid contribution 0.757 -0.373 1.468 1.693 sum -4.941 11.875 -14.849 19.645 Atomic orbital electron populations 1.22018 0.90795 1.03723 1.03900 1.17121 0.96921 0.94252 0.84235 1.21939 1.02265 0.91780 1.03779 1.28946 0.93533 0.93637 0.94073 1.81224 1.08514 1.08806 1.11704 1.19560 0.93817 0.99233 0.94752 1.20903 0.94690 1.00095 0.97769 1.21220 1.00275 0.94442 0.92208 1.20168 0.94141 1.00846 0.96249 1.17958 0.84451 0.80740 0.82237 1.90759 1.19812 1.48827 1.83152 1.48688 1.20142 1.48841 1.15800 1.22620 0.85235 0.96102 0.98594 1.22803 1.01787 0.99060 0.92106 1.19466 0.83937 0.83773 0.91956 1.86065 1.42648 1.22097 1.88850 1.21482 1.39254 0.98368 0.98547 0.91497 1.25075 0.94432 0.95035 0.98718 1.69555 1.43908 1.02122 1.37964 0.86438 0.79171 0.77587 0.83591 1.19952 1.21050 1.20000 1.23096 1.01373 0.95232 0.82400 1.21948 0.95100 0.96751 0.97516 1.21094 0.99951 0.98340 0.93985 0.89654 0.91202 0.91070 0.91356 0.91246 0.89891 0.85692 0.84710 0.91327 0.91349 0.90323 0.90427 0.76116 0.91790 0.91380 0.91608 0.83747 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 7.08 37.16 0.26 -0.40 16 2 C 0.08 0.53 0.78 -158.44 -0.12 0.40 16 3 C -0.14 -0.67 8.24 37.16 0.31 -0.37 16 4 C 0.22 2.12 13.46 -20.76 -0.28 1.84 16 5 N -0.43 -5.42 18.54 42.15 0.78 -4.64 16 6 C -0.07 -0.64 4.75 -104.53 -0.50 -1.14 16 7 C -0.12 -1.21 8.78 -39.64 -0.35 -1.56 16 8 C -0.06 -0.83 9.59 -39.19 -0.38 -1.20 16 9 C -0.11 -1.66 5.67 -104.97 -0.59 -2.26 16 10 C 0.56 10.93 7.64 -12.33 -0.09 10.83 16 11 O -0.55 -12.70 16.94 5.32 0.09 -12.61 16 12 N -0.60 -11.91 3.33 -171.59 -0.57 -12.48 16 13 C 0.10 1.57 4.99 -2.50 -0.01 1.56 16 14 C -0.12 -2.23 6.22 -24.59 -0.15 -2.38 16 15 C 0.25 5.79 0.86 -89.94 -0.08 5.71 16 16 O -0.59 -14.24 13.09 -35.23 -0.46 -14.70 16 17 C -0.54 -13.65 8.11 -34.44 -0.28 -13.92 16 18 H 0.07 1.66 7.76 -52.49 -0.41 1.25 16 19 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 20 N -0.90 -23.40 10.98 55.43 0.61 -22.79 16 21 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C 0.10 2.36 5.55 -3.06 -0.02 2.34 16 26 C -0.09 -1.14 8.08 -39.19 -0.32 -1.45 16 27 C -0.12 -1.05 8.96 -39.64 -0.36 -1.40 16 28 H 0.08 0.26 7.51 -51.93 -0.39 -0.13 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.35 7.50 -51.93 -0.39 -0.04 16 31 H 0.07 0.35 7.38 -51.93 -0.38 -0.03 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.13 1.09 7.55 -52.49 -0.40 0.69 16 35 H 0.14 1.82 7.84 -52.49 -0.41 1.41 16 36 H 0.07 1.04 6.82 -51.93 -0.35 0.68 16 37 H 0.07 0.90 6.85 -51.93 -0.36 0.54 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 40 H 0.39 9.78 6.98 45.56 0.32 10.10 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.07 1.75 7.82 -51.93 -0.41 1.34 16 43 H 0.07 1.69 8.07 -51.93 -0.42 1.27 16 44 H 0.15 1.67 4.61 -52.49 -0.24 1.43 16 45 H 0.14 0.83 5.87 -52.49 -0.31 0.53 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -31.05 369.22 -7.44 -38.49 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.39 Total: 9.83 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.05 Total: -1.71 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.82 Total: -39.92 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.37 Total: -27.31 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.05 -7.44 -38.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.125 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds