Wall clock time and date at job start Tue Mar 31 2020 16:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47427 * 2 1 4 4 C 1.47204 * 109.47002 * 240.00022 * 2 1 3 5 5 N 2.60800 * 109.47084 * 239.99977 * 2 1 3 6 6 C 1.50704 * 109.47216 * 120.00225 * 2 1 3 7 7 C 1.38360 * 119.85322 * 180.02562 * 6 2 1 8 8 C 1.37956 * 120.14202 * 179.97438 * 7 6 2 9 9 C 1.39574 * 119.85351 * 0.02562 * 8 7 6 10 10 C 1.47851 * 120.14250 * 179.97438 * 9 8 7 11 11 O 1.21554 * 120.00018 * 335.55108 * 10 9 8 12 12 N 1.34776 * 119.99856 * 155.54803 * 10 9 8 13 13 C 1.47472 * 125.63030 * 354.23006 * 12 10 9 14 14 C 1.54906 * 104.81188 * 204.04692 * 13 12 10 15 15 C 1.55155 * 101.61654 * 323.04739 * 14 13 12 16 16 O 1.42903 * 110.71943 * 277.11483 * 15 14 13 17 17 C 1.50705 * 110.72109 * 154.02294 * 15 14 13 18 18 H 1.07998 * 119.99658 * 0.02562 * 17 15 14 19 19 C 1.37875 * 119.99857 * 179.97438 * 17 15 14 20 20 N 1.31513 * 120.00399 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99836 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47243 * 59.99583 * 21 19 17 23 23 H 1.48503 * 109.47443 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47382 * 300.00078 * 21 19 17 25 25 C 1.47026 * 125.64597 * 174.20826 * 12 10 9 26 26 C 1.39575 * 119.71291 * 0.25760 * 9 8 7 27 27 C 1.37959 * 119.85224 * 359.46874 * 26 9 8 28 28 H 1.09003 * 109.46845 * 299.99889 * 1 2 3 29 29 H 1.08993 * 109.46994 * 59.99540 * 1 2 3 30 30 H 1.08995 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47648 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47442 * 300.00130 * 3 2 1 33 33 H 1.08999 * 109.47310 * 59.99814 * 3 2 1 34 34 H 1.07995 * 119.92910 * 359.96867 * 7 6 2 35 35 H 1.08000 * 120.07379 * 180.02562 * 8 7 6 36 36 H 1.09002 * 110.34139 * 85.22914 * 13 12 10 37 37 H 1.08993 * 110.40525 * 322.89682 * 13 12 10 38 38 H 1.08999 * 111.00532 * 204.95159 * 14 13 12 39 39 H 1.09005 * 111.00166 * 81.13493 * 14 13 12 40 40 H 0.96702 * 113.99954 * 180.02562 * 16 15 14 41 41 H 0.97003 * 120.00235 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.88131 * 59.57865 * 25 12 10 43 43 H 1.08998 * 110.00592 * 298.48511 * 25 12 10 44 44 H 1.07999 * 120.06916 * 179.72704 * 26 9 8 45 45 H 1.07992 * 119.92985 * 180.27843 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 6 2.0324 -0.7105 1.2305 7 6 3.3933 -0.8347 1.4466 8 6 3.8598 -1.4834 2.5713 9 6 2.9554 -2.0155 3.4917 10 6 3.4483 -2.7125 4.6988 11 8 4.5545 -3.2162 4.7007 12 7 2.6710 -2.7893 5.7972 13 6 1.3663 -2.1250 5.9745 14 6 1.1934 -1.9949 7.5084 15 6 1.8221 -3.3227 8.0074 16 8 0.8756 -4.3906 7.9304 17 6 2.3394 -3.1719 9.4148 18 1 2.2406 -2.2268 9.9280 19 6 2.9378 -4.2408 10.0476 20 7 3.0567 -5.3921 9.4232 21 14 3.5783 -4.0541 11.7923 22 1 2.4578 -3.6846 12.6942 23 1 4.1720 -5.3389 12.2419 24 1 4.6138 -2.9903 11.8283 25 6 2.9831 -3.5495 7.0163 26 6 1.5838 -1.8919 3.2646 27 6 1.1306 -1.2358 2.1388 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 4.0920 -0.4230 0.7334 35 1 4.9223 -1.5794 2.7391 36 1 0.5690 -2.7374 5.5534 37 1 1.3752 -1.1397 5.5087 38 1 0.1393 -1.9357 7.7791 39 1 1.7421 -1.1346 7.8917 40 1 1.2190 -5.2430 8.2313 41 1 3.4780 -6.1440 9.8682 42 1 3.9161 -3.1888 7.4494 43 1 3.0689 -4.6106 6.7824 44 1 0.8790 -2.3053 3.9707 45 1 0.0696 -1.1356 1.9641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592854872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:39 Heat of formation + Delta-G solvation = -47.652684 kcal Electronic energy + Delta-G solvation = -27575.067027 eV Core-core repulsion = 23749.740358 eV Total energy + Delta-G solvation = -3825.326668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.63539 -40.48398 -39.01241 -37.96509 -36.23165 -35.75446 -34.17061 -32.42257 -31.87400 -31.00080 -29.54287 -28.24940 -27.23358 -25.51431 -24.51225 -23.30816 -22.71956 -21.44983 -20.74354 -19.17592 -18.65438 -18.40685 -17.38780 -17.00663 -16.67039 -16.53375 -16.05630 -15.78860 -15.53662 -14.99744 -14.87672 -14.78426 -14.76621 -14.61470 -14.36906 -14.16010 -13.91646 -13.58540 -13.56737 -13.44423 -13.12789 -13.00257 -12.85391 -12.75603 -12.63301 -12.48792 -12.33886 -12.31572 -12.21725 -12.09342 -11.93975 -11.63529 -11.17231 -11.07664 -10.63640 -10.29192 -9.97715 -9.91968 -9.57455 -8.27965 -6.43596 -0.22667 0.38188 1.42294 1.43152 1.50962 1.63615 1.72214 1.79171 2.01636 2.37499 2.65423 2.98734 3.02092 3.39859 3.60647 3.73302 3.81194 3.94872 4.04478 4.08171 4.12457 4.24286 4.33066 4.42220 4.48549 4.61110 4.68089 4.73218 4.88538 4.91728 4.96450 4.99230 5.01134 5.02558 5.12827 5.22558 5.27565 5.34544 5.36592 5.38887 5.41270 5.50009 5.52119 5.74909 5.85455 6.03225 6.51028 6.57105 6.65283 7.07505 7.28503 7.37757 8.77906 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027767 B = 0.002588 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.159448 B =10815.832742 C =11165.188744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.083 3.917 3 C -0.141 4.141 4 C 0.238 3.762 5 N -0.485 5.485 6 C -0.058 4.058 7 C -0.114 4.114 8 C -0.076 4.076 9 C -0.136 4.136 10 C 0.551 3.449 11 O -0.600 6.600 12 N -0.607 5.607 13 C 0.102 3.898 14 C -0.114 4.114 15 C 0.235 3.765 16 O -0.587 6.587 17 C -0.557 4.557 18 H 0.069 0.931 19 C 0.024 3.976 20 N -0.919 5.919 21 Si 0.963 3.037 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.116 3.884 26 C -0.093 4.093 27 C -0.099 4.099 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.378 0.622 41 H 0.271 0.729 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.152 0.848 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.475 15.964 -15.859 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.079 3.921 3 C -0.199 4.199 4 C -0.079 4.079 5 N -0.160 5.160 6 C -0.059 4.059 7 C -0.132 4.132 8 C -0.095 4.095 9 C -0.139 4.139 10 C 0.342 3.658 11 O -0.483 6.483 12 N -0.338 5.338 13 C -0.019 4.019 14 C -0.152 4.152 15 C 0.194 3.806 16 O -0.396 6.396 17 C -0.595 4.595 18 H 0.087 0.913 19 C -0.176 4.176 20 N -0.559 5.559 21 Si 0.788 3.212 22 H -0.190 1.190 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.007 4.007 26 C -0.111 4.111 27 C -0.116 4.116 28 H 0.129 0.871 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.158 0.842 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.229 0.771 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.169 0.831 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.614 15.180 -17.532 24.738 hybrid contribution 1.657 -1.233 1.753 2.709 sum -6.956 13.947 -15.779 22.178 Atomic orbital electron populations 1.22143 0.88351 1.04372 1.05919 1.17392 0.98683 0.94557 0.81441 1.22018 1.02057 0.90372 1.05460 1.29557 0.92019 0.92400 0.93969 1.81258 1.10439 1.10620 1.13679 1.19860 0.93071 0.97724 0.95287 1.21064 0.96073 0.99286 0.96749 1.21174 0.99474 0.95636 0.93240 1.19849 0.95998 1.03162 0.94926 1.18834 0.83648 0.80004 0.83271 1.90711 1.22267 1.51116 1.84219 1.48727 1.21653 1.48703 1.14731 1.22851 0.83640 0.98179 0.97194 1.22809 1.02502 0.96211 0.93670 1.19682 0.84225 0.85538 0.91150 1.86051 1.42841 1.21958 1.88760 1.21858 1.39368 0.98476 0.99798 0.91259 1.25827 0.94736 0.94905 1.02175 1.69669 1.44457 1.02607 1.39125 0.85525 0.78697 0.77303 0.79637 1.19012 1.21100 1.19936 1.22607 1.00306 0.93446 0.84359 1.22025 0.93373 0.96927 0.98801 1.21486 1.01966 0.96035 0.92141 0.87079 0.89953 0.91111 0.91929 0.89829 0.88031 0.84212 0.86430 0.89523 0.87294 0.88493 0.89920 0.77117 0.91992 0.94982 0.95235 0.83105 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 7.08 71.98 0.51 -0.03 16 2 C 0.08 0.76 0.78 -54.73 -0.04 0.71 16 3 C -0.14 -0.74 8.24 71.98 0.59 -0.15 16 4 C 0.24 4.02 13.46 89.44 1.20 5.22 16 5 N -0.48 -11.62 18.54 20.01 0.37 -11.25 16 6 C -0.06 -0.81 4.75 -19.81 -0.09 -0.90 16 7 C -0.11 -2.13 8.78 22.23 0.20 -1.93 16 8 C -0.08 -2.00 9.59 22.53 0.22 -1.79 16 9 C -0.14 -4.01 5.67 -20.09 -0.11 -4.12 16 10 C 0.55 22.40 7.64 86.79 0.66 23.06 16 11 O -0.60 -29.94 16.94 -3.88 -0.07 -30.01 16 12 N -0.61 -24.44 3.33 -815.08 -2.71 -27.15 16 13 C 0.10 3.08 4.99 86.85 0.43 3.51 16 14 C -0.11 -4.07 6.22 31.98 0.20 -3.87 16 15 C 0.23 11.07 0.86 -10.35 -0.01 11.06 16 16 O -0.59 -28.95 13.09 -148.98 -1.95 -30.90 16 17 C -0.56 -28.71 8.11 25.60 0.21 -28.50 16 18 H 0.07 3.44 7.76 -2.91 -0.02 3.42 16 19 C 0.02 1.25 5.28 84.65 0.45 1.70 16 20 N -0.92 -49.88 10.98 21.45 0.24 -49.64 16 21 Si 0.96 41.75 29.54 68.60 2.03 43.77 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 23 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 C 0.12 5.76 5.55 86.73 0.48 6.24 16 26 C -0.09 -1.94 8.08 22.53 0.18 -1.75 16 27 C -0.10 -1.31 8.96 22.23 0.20 -1.12 16 28 H 0.11 -0.10 7.51 -2.39 -0.02 -0.12 16 29 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.07 0.31 7.50 -2.39 -0.02 0.29 16 31 H 0.06 0.43 7.38 -2.39 -0.02 0.41 16 32 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.14 2.16 7.55 -2.91 -0.02 2.14 16 35 H 0.12 3.40 7.84 -2.91 -0.02 3.38 16 36 H 0.09 2.34 6.82 -2.39 -0.02 2.32 16 37 H 0.11 2.44 6.85 -2.39 -0.02 2.43 16 38 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.08 2.84 8.03 -2.38 -0.02 2.82 16 40 H 0.38 19.87 6.98 -74.06 -0.52 19.35 16 41 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.03 1.77 7.82 -2.39 -0.02 1.75 16 43 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 44 H 0.15 2.93 4.61 -2.91 -0.01 2.91 16 45 H 0.18 0.96 5.87 -2.91 -0.02 0.94 16 Total: -1.00 -73.79 369.22 3.69 -70.10 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.51 Total: 27.74 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 5.27 Total: 7.34 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -2.11 Total: -88.05 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -2.02 Total: -60.91 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -73.79 3.69 -70.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.447 kcal (2) G-P(sol) polarization free energy of solvation -73.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds