Wall clock time and date at job start Tue Mar 31 2020 15:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 C 1.50696 * 109.47055 * 60.00233 * 4 2 1 6 6 H 1.08000 * 120.00290 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00258 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00465 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99610 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46964 * 90.00693 * 9 7 5 11 11 H 1.48502 * 109.47035 * 210.00526 * 9 7 5 12 12 H 1.48499 * 109.47257 * 330.00601 * 9 7 5 13 13 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 14 14 N 1.46504 * 109.46883 * 300.00241 * 13 2 1 15 15 C 1.34775 * 119.99531 * 179.97438 * 14 13 2 16 16 O 1.21552 * 120.00294 * 0.02562 * 15 14 13 17 17 C 1.47875 * 119.99861 * 179.97438 * 15 14 13 18 18 C 1.39675 * 120.07107 * 0.02562 * 17 15 14 19 19 C 1.38059 * 120.14349 * 179.97438 * 18 17 15 20 20 C 1.38095 * 120.29939 * 0.02562 * 19 18 17 21 21 C 1.39644 * 120.14860 * 0.03041 * 20 19 18 22 22 C 1.47852 * 120.07427 * 179.97438 * 21 20 19 23 23 C 1.35763 * 126.58247 * 359.97438 * 22 21 20 24 24 N 1.34143 * 107.51636 * 179.97438 * 23 22 21 25 25 C 1.30357 * 108.90052 * 0.02562 * 24 23 22 26 26 O 1.34004 * 109.03601 * 359.75299 * 25 24 23 27 27 C 1.39311 * 120.07061 * 179.72584 * 17 15 14 28 28 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 34 34 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 36 36 H 0.96999 * 120.00061 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.47002 * 59.99738 * 13 2 1 38 38 H 1.08993 * 109.46955 * 180.02562 * 13 2 1 39 39 H 0.96992 * 119.99966 * 359.97438 * 14 13 2 40 40 H 1.08003 * 119.93418 * 359.96872 * 18 17 15 41 41 H 1.08001 * 119.84934 * 180.02562 * 19 18 17 42 42 H 1.08003 * 119.92301 * 179.97438 * 20 19 18 43 43 H 1.08003 * 126.24151 * 359.96145 * 23 22 21 44 44 H 1.08007 * 125.48502 * 180.02562 * 25 24 23 45 45 H 1.07994 * 120.15310 * 0.02562 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 1.4325 0.1378 -4.8058 9 14 2.9443 -2.0012 -3.9032 10 1 2.0857 -3.2120 -3.9481 11 1 3.7359 -1.9090 -5.1562 12 1 3.8650 -2.0901 -2.7414 13 6 2.0400 -0.7212 1.2494 14 7 1.5516 -0.0304 2.4455 15 6 1.8768 -0.4911 3.6696 16 8 2.5756 -1.4794 3.7812 17 6 1.3843 0.2063 4.8769 18 6 0.5816 1.3424 4.7504 19 6 0.1206 1.9944 5.8766 20 6 0.4495 1.5293 7.1346 21 6 1.2522 0.3954 7.2754 22 6 1.6038 -0.1008 8.6231 23 6 1.2226 0.4391 9.8090 24 7 1.7542 -0.3128 10.7844 25 6 2.4393 -1.2817 10.2448 26 8 2.3620 -1.1815 8.9108 27 6 1.7148 -0.2719 6.1429 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 -0.7217 -1.2489 35 1 1.6766 -1.7490 -1.2491 36 1 1.6668 -0.1936 -5.6868 37 1 1.6766 -1.7488 1.2494 38 1 3.1299 -0.7208 1.2495 39 1 0.9942 0.7583 2.3564 40 1 0.3210 1.7117 3.7695 41 1 -0.5002 2.8722 5.7733 42 1 0.0858 2.0444 8.0115 43 1 0.6043 1.3145 9.9427 44 1 2.9787 -2.0452 10.7859 45 1 2.3315 -1.1524 6.2463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597661904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:17 Heat of formation + Delta-G solvation = 1.671675 kcal Electronic energy + Delta-G solvation = -26589.082845 eV Core-core repulsion = 22765.895041 eV Total energy + Delta-G solvation = -3823.187804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.69247 -40.39858 -38.75343 -37.20738 -35.19555 -33.98646 -32.97402 -32.10010 -31.51793 -29.13409 -27.87407 -26.61866 -26.51099 -24.47988 -23.92304 -22.89893 -22.02743 -21.80246 -20.31472 -19.02984 -18.10498 -17.37974 -16.98580 -16.85626 -16.56190 -16.05267 -15.59106 -15.27466 -15.03452 -14.47063 -14.26308 -14.18202 -13.91553 -13.77327 -13.57090 -13.46160 -13.12844 -12.78032 -12.36246 -12.30017 -12.20534 -11.82547 -11.75429 -11.29812 -11.18477 -11.05441 -11.03787 -10.66094 -10.54333 -10.38569 -10.10379 -10.02257 -9.77871 -9.52807 -9.45329 -9.03608 -8.90456 -8.56992 -8.56306 -6.07083 -4.04611 0.11389 0.62147 1.45329 2.23124 2.26648 2.76957 3.16374 3.29556 3.37801 3.41562 3.56495 3.78251 4.13688 4.39077 4.43094 4.43205 4.54210 4.68450 4.71083 4.91201 5.10256 5.23994 5.25159 5.34833 5.41147 5.46817 5.51250 5.57538 5.82931 5.86932 5.89119 5.92301 6.03763 6.05074 6.13004 6.24854 6.30944 6.39609 6.53977 6.60789 6.83891 6.96585 6.99961 7.15727 7.23133 7.32272 7.53408 7.75544 8.20212 8.49462 8.96549 9.55491 11.05493 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029284 B = 0.002112 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.917330 B =13255.643270 C =14015.196777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.713 5.713 15 C 0.551 3.449 16 O -0.539 6.539 17 C -0.123 4.123 18 C -0.076 4.076 19 C -0.119 4.119 20 C -0.074 4.074 21 C -0.028 4.028 22 C 0.003 3.997 23 C -0.024 4.024 24 N -0.487 5.487 25 C 0.175 3.825 26 O -0.196 6.196 27 C -0.041 4.041 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.019 0.981 35 H 0.014 0.986 36 H 0.262 0.738 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.399 0.601 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.134 0.866 43 H 0.187 0.813 44 H 0.252 0.748 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 3.417 27.644 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.187 4.187 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.365 5.365 15 C 0.337 3.663 16 O -0.417 6.417 17 C -0.126 4.126 18 C -0.094 4.094 19 C -0.137 4.137 20 C -0.092 4.092 21 C -0.029 4.029 22 C -0.050 4.050 23 C -0.164 4.164 24 N -0.215 5.215 25 C -0.050 4.050 26 O -0.082 6.082 27 C -0.060 4.060 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.236 0.764 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.152 0.848 43 H 0.204 0.796 44 H 0.268 0.732 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.905 2.740 28.104 28.302 hybrid contribution 0.415 -0.634 -0.938 1.206 sum -1.490 2.105 27.166 27.289 Atomic orbital electron populations 1.21790 0.94754 1.01369 1.00776 1.20704 0.95855 0.95946 0.93878 1.21785 1.00573 0.95540 1.00773 1.19590 0.96332 0.95513 0.92542 1.21064 1.31906 1.13380 0.88592 0.90381 1.25005 0.95699 0.96768 0.95999 1.69898 1.45882 1.40529 0.97888 0.86858 0.81327 0.83897 0.77675 1.20369 1.21492 1.18994 1.21712 0.99089 0.96132 0.82868 1.46093 1.52898 1.31871 1.05626 1.18190 0.80663 0.84173 0.83293 1.90781 1.38048 1.26104 1.86800 1.19994 1.01337 0.97492 0.93825 1.21543 0.94636 0.93568 0.99681 1.21024 1.00648 1.00599 0.91408 1.21207 0.95527 0.94037 0.98457 1.17512 1.01029 0.96890 0.87462 1.21400 0.98660 0.89415 0.95552 1.23304 1.04018 1.02391 0.86692 1.70367 1.11560 1.05550 1.34027 1.28197 0.99928 0.99776 0.77123 1.84524 1.55308 1.40646 1.27677 1.21379 0.96082 0.98504 0.90034 0.95113 0.90740 0.93299 0.93290 0.90742 0.95103 0.96313 0.96765 0.92772 0.91533 0.91529 0.76406 0.84890 0.84294 0.84795 0.79594 0.73185 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 2 C -0.06 -1.12 0.54 -154.51 -0.08 -1.20 16 3 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 4 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 5 C -0.51 -13.42 8.20 -34.44 -0.28 -13.71 16 6 H 0.08 2.16 5.92 -52.49 -0.31 1.85 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 9 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.12 2.02 4.56 -4.04 -0.02 2.00 16 14 N -0.71 -9.62 4.91 -61.24 -0.30 -9.92 16 15 C 0.55 7.96 7.77 -12.32 -0.10 7.87 16 16 O -0.54 -9.79 16.34 5.32 0.09 -9.70 16 17 C -0.12 -1.40 5.87 -105.02 -0.62 -2.02 16 18 C -0.08 -0.63 9.54 -39.11 -0.37 -1.01 16 19 C -0.12 -0.78 10.02 -39.70 -0.40 -1.17 16 20 C -0.07 -0.51 9.57 -39.11 -0.37 -0.88 16 21 C -0.03 -0.26 5.87 -105.03 -0.62 -0.88 16 22 C 0.00 0.03 7.07 -36.54 -0.26 -0.23 16 23 C -0.02 -0.21 11.29 -17.43 -0.20 -0.40 16 24 N -0.49 -4.56 11.27 -14.68 -0.17 -4.72 16 25 C 0.17 1.28 13.22 52.14 0.69 1.97 16 26 O -0.20 -1.89 10.59 4.23 0.04 -1.84 16 27 C -0.04 -0.46 9.27 -38.77 -0.36 -0.82 16 28 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 29 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 33 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 34 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 35 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.40 4.41 4.19 -40.82 -0.17 4.24 16 40 H 0.13 0.88 6.39 -52.48 -0.34 0.55 16 41 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 42 H 0.13 0.54 7.02 -52.48 -0.37 0.17 16 43 H 0.19 1.01 7.29 -52.48 -0.38 0.63 16 44 H 0.25 0.58 8.06 -52.48 -0.42 0.15 16 45 H 0.14 1.76 7.53 -52.49 -0.40 1.36 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -33.90 369.81 -7.06 -40.96 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.83 Total: 1.67 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.57 Total: -12.54 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.31 Total: -40.73 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.13 Total: -11.55 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.90 -7.06 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597661904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.627 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds