Wall clock time and date at job start Tue Mar 31 2020 15:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 C 1.50696 * 109.47055 * 60.00233 * 4 2 1 6 6 H 1.08000 * 120.00290 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00258 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00465 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99610 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46964 * 90.00693 * 9 7 5 11 11 H 1.48502 * 109.47035 * 210.00526 * 9 7 5 12 12 H 1.48499 * 109.47257 * 330.00601 * 9 7 5 13 13 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 14 14 N 1.46504 * 109.46883 * 300.00241 * 13 2 1 15 15 C 1.34775 * 119.99531 * 179.97438 * 14 13 2 16 16 O 1.21552 * 120.00294 * 0.02562 * 15 14 13 17 17 C 1.47875 * 119.99861 * 179.97438 * 15 14 13 18 18 C 1.39675 * 120.07107 * 0.02562 * 17 15 14 19 19 C 1.38059 * 120.14349 * 179.97438 * 18 17 15 20 20 C 1.38095 * 120.29939 * 0.02562 * 19 18 17 21 21 C 1.39644 * 120.14860 * 0.03041 * 20 19 18 22 22 C 1.47852 * 120.07427 * 179.97438 * 21 20 19 23 23 C 1.35763 * 126.58247 * 359.97438 * 22 21 20 24 24 N 1.34143 * 107.51636 * 179.97438 * 23 22 21 25 25 C 1.30357 * 108.90052 * 0.02562 * 24 23 22 26 26 O 1.34004 * 109.03601 * 359.75299 * 25 24 23 27 27 C 1.39311 * 120.07061 * 179.72584 * 17 15 14 28 28 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 34 34 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 36 36 H 0.96999 * 120.00061 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.47002 * 59.99738 * 13 2 1 38 38 H 1.08993 * 109.46955 * 180.02562 * 13 2 1 39 39 H 0.96992 * 119.99966 * 359.97438 * 14 13 2 40 40 H 1.08003 * 119.93418 * 359.96872 * 18 17 15 41 41 H 1.08001 * 119.84934 * 180.02562 * 19 18 17 42 42 H 1.08003 * 119.92301 * 179.97438 * 20 19 18 43 43 H 1.08003 * 126.24151 * 359.96145 * 23 22 21 44 44 H 1.08007 * 125.48502 * 180.02562 * 25 24 23 45 45 H 1.07994 * 120.15310 * 0.02562 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 1.4325 0.1378 -4.8058 9 14 2.9443 -2.0012 -3.9032 10 1 2.0857 -3.2120 -3.9481 11 1 3.7359 -1.9090 -5.1562 12 1 3.8650 -2.0901 -2.7414 13 6 2.0400 -0.7212 1.2494 14 7 1.5516 -0.0304 2.4455 15 6 1.8768 -0.4911 3.6696 16 8 2.5756 -1.4794 3.7812 17 6 1.3843 0.2063 4.8769 18 6 0.5816 1.3424 4.7504 19 6 0.1206 1.9944 5.8766 20 6 0.4495 1.5293 7.1346 21 6 1.2522 0.3954 7.2754 22 6 1.6038 -0.1008 8.6231 23 6 1.2226 0.4391 9.8090 24 7 1.7542 -0.3128 10.7844 25 6 2.4393 -1.2817 10.2448 26 8 2.3620 -1.1815 8.9108 27 6 1.7148 -0.2719 6.1429 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 -0.7217 -1.2489 35 1 1.6766 -1.7490 -1.2491 36 1 1.6668 -0.1936 -5.6868 37 1 1.6766 -1.7488 1.2494 38 1 3.1299 -0.7208 1.2495 39 1 0.9942 0.7583 2.3564 40 1 0.3210 1.7117 3.7695 41 1 -0.5002 2.8722 5.7733 42 1 0.0858 2.0444 8.0115 43 1 0.6043 1.3145 9.9427 44 1 2.9787 -2.0452 10.7859 45 1 2.3315 -1.1524 6.2463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597661904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:16 Heat of formation + Delta-G solvation = -21.924825 kcal Electronic energy + Delta-G solvation = -26590.106066 eV Core-core repulsion = 22765.895041 eV Total energy + Delta-G solvation = -3824.211025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -44.30290 -41.38253 -39.67122 -38.58081 -35.82780 -35.36468 -34.24997 -33.46404 -32.23275 -29.95106 -29.55562 -27.98757 -27.73817 -25.37495 -24.71647 -24.10162 -23.14981 -22.43005 -21.33040 -20.09344 -19.18051 -18.89530 -18.16096 -17.62925 -17.39478 -16.93441 -16.48436 -16.39780 -16.22663 -15.75913 -15.31026 -15.27295 -14.99999 -14.85228 -14.75490 -14.25449 -14.21865 -14.08095 -14.07670 -13.66919 -12.94378 -12.86064 -12.78656 -12.61560 -12.47254 -12.43014 -12.30768 -12.16798 -11.78829 -11.69165 -11.52954 -11.35882 -11.02533 -11.02211 -10.90264 -10.70759 -10.26556 -9.98643 -9.18227 -8.22662 -6.22443 -0.50107 -0.11332 0.85239 1.35012 1.38215 1.47727 1.63908 1.69889 1.88453 2.08043 2.38416 2.80532 3.12711 3.33201 3.48415 3.63417 3.84459 3.88196 3.98093 4.04180 4.07720 4.11454 4.16068 4.29206 4.49390 4.62901 4.68703 4.72473 4.78147 4.84226 4.88456 4.94157 5.00701 5.09572 5.22507 5.28127 5.28990 5.29800 5.32005 5.33872 5.40784 5.42933 5.55222 5.69369 5.73842 5.76375 6.37483 6.48244 6.63967 6.84350 7.12449 7.40198 8.92610 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029284 B = 0.002112 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.917330 B =13255.643270 C =14015.196777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.125 4.125 4 C -0.004 4.004 5 C -0.500 4.500 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.949 5.949 9 Si 0.932 3.068 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.253 1.253 13 C 0.137 3.863 14 N -0.701 5.701 15 C 0.550 3.450 16 O -0.586 6.586 17 C -0.143 4.143 18 C -0.073 4.073 19 C -0.108 4.108 20 C -0.062 4.062 21 C -0.035 4.035 22 C -0.024 4.024 23 C -0.019 4.019 24 N -0.518 5.518 25 C 0.184 3.816 26 O -0.217 6.217 27 C -0.063 4.063 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.014 0.986 35 H 0.012 0.988 36 H 0.262 0.738 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.413 0.587 40 H 0.154 0.846 41 H 0.179 0.821 42 H 0.169 0.831 43 H 0.215 0.785 44 H 0.292 0.708 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 4.725 30.502 31.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.042 4.042 5 C -0.538 4.538 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.591 5.591 9 Si 0.758 3.242 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.177 1.177 13 C 0.013 3.987 14 N -0.354 5.354 15 C 0.339 3.661 16 O -0.468 6.468 17 C -0.146 4.146 18 C -0.091 4.091 19 C -0.125 4.125 20 C -0.080 4.080 21 C -0.036 4.036 22 C -0.077 4.077 23 C -0.158 4.158 24 N -0.246 5.246 25 C -0.040 4.040 26 O -0.104 6.104 27 C -0.082 4.082 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.032 0.968 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.253 0.747 40 H 0.172 0.828 41 H 0.196 0.804 42 H 0.187 0.813 43 H 0.232 0.768 44 H 0.307 0.693 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.867 4.077 30.981 31.379 hybrid contribution 0.666 -0.983 -1.683 2.060 sum -2.201 3.094 29.298 29.543 Atomic orbital electron populations 1.21728 0.93700 1.01359 1.01497 1.20560 0.96649 0.96205 0.92406 1.21726 1.00293 0.94753 1.01500 1.19573 0.95946 0.95505 0.93207 1.21357 1.30206 1.12319 0.89950 0.92683 1.25819 0.97459 0.99827 0.95994 1.70031 1.48093 1.42570 0.98397 0.85926 0.79915 0.80536 0.77862 1.19789 1.21501 1.17703 1.21354 0.98414 0.95710 0.83249 1.45856 1.52861 1.32045 1.04595 1.18701 0.79682 0.83568 0.84180 1.90752 1.40251 1.28325 1.87462 1.19747 1.03654 0.99165 0.92052 1.21806 0.93486 0.92246 1.01596 1.21484 0.99716 1.00970 0.90319 1.21672 0.93568 0.92559 1.00153 1.17675 1.01501 0.97667 0.86715 1.21617 0.99903 0.90077 0.96065 1.23766 1.03374 1.02669 0.85957 1.70407 1.12885 1.06661 1.34663 1.29193 0.98670 0.99690 0.76470 1.84531 1.55801 1.41215 1.28862 1.21243 0.97168 0.98595 0.91184 0.91065 0.93295 0.93712 0.93750 0.93290 0.91050 0.96782 0.96928 0.92880 0.92501 0.92573 0.74724 0.82833 0.80404 0.81341 0.76841 0.69347 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 8.05 71.98 0.58 -3.40 16 2 C -0.06 -1.98 0.54 -52.18 -0.03 -2.01 16 3 C -0.13 -3.98 8.05 71.98 0.58 -3.40 16 4 C 0.00 -0.20 3.11 29.85 0.09 -0.10 16 5 C -0.50 -26.73 8.20 25.60 0.21 -26.52 16 6 H 0.06 3.15 5.92 -2.91 -0.02 3.13 16 7 C 0.01 0.30 5.47 84.66 0.46 0.77 16 8 N -0.95 -57.98 13.96 21.45 0.30 -57.68 16 9 Si 0.93 44.28 27.47 68.60 1.88 46.16 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 13 C 0.14 4.32 4.56 86.38 0.39 4.72 16 14 N -0.70 -17.75 4.91 -465.93 -2.29 -20.04 16 15 C 0.55 15.75 7.77 86.80 0.67 16.42 16 16 O -0.59 -22.04 16.34 -3.88 -0.06 -22.10 16 17 C -0.14 -3.11 5.87 -20.12 -0.12 -3.23 16 18 C -0.07 -0.97 9.54 22.57 0.22 -0.76 16 19 C -0.11 -0.89 10.02 22.19 0.22 -0.67 16 20 C -0.06 -0.61 9.57 22.58 0.22 -0.39 16 21 C -0.03 -0.60 5.87 -20.13 -0.12 -0.72 16 22 C -0.02 -0.43 7.07 24.24 0.17 -0.26 16 23 C -0.02 -0.28 11.29 83.77 0.95 0.67 16 24 N -0.52 -8.86 11.27 -315.07 -3.55 -12.41 16 25 C 0.18 2.47 13.22 130.46 1.72 4.20 16 26 O -0.22 -4.17 10.59 -7.79 -0.08 -4.26 16 27 C -0.06 -1.43 9.27 22.80 0.21 -1.22 16 28 H 0.07 1.65 6.86 -2.39 -0.02 1.64 16 29 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.81 6.62 -2.39 -0.02 1.80 16 33 H 0.07 1.66 6.86 -2.39 -0.02 1.64 16 34 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 35 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.41 7.79 4.19 -92.71 -0.39 7.40 16 40 H 0.15 1.32 6.39 -2.91 -0.02 1.30 16 41 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 42 H 0.17 0.46 7.02 -2.91 -0.02 0.44 16 43 H 0.21 1.58 7.29 -2.91 -0.02 1.56 16 44 H 0.29 0.75 8.06 -2.91 -0.02 0.73 16 45 H 0.11 3.13 7.53 -2.91 -0.02 3.11 16 Total: -1.00 -78.19 369.81 3.22 -74.97 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.58 Total: 11.27 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 6.44 Total: -15.92 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -5.54 Total: -90.13 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.15 Total: -26.36 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -78.19 3.22 -74.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597661904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.046 kcal (2) G-P(sol) polarization free energy of solvation -78.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds