Wall clock time and date at job start Tue Mar 31 2020 15:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47247 * 2 1 4 4 C 1.53002 * 109.47080 * 240.00091 * 2 1 3 5 5 C 1.50698 * 109.47454 * 119.99954 * 2 1 3 6 6 C 1.34337 * 126.44161 * 59.99380 * 5 2 1 7 7 N 1.34478 * 107.66810 * 179.72743 * 6 5 2 8 8 C 1.30257 * 108.70239 * 0.42862 * 7 6 5 9 9 C 1.50693 * 125.62059 * 179.83732 * 8 7 6 10 10 N 1.46504 * 109.47206 * 89.69517 * 9 8 7 11 11 C 1.34775 * 120.00020 * 179.97438 * 10 9 8 12 12 O 1.21617 * 120.00035 * 0.02562 * 11 10 9 13 13 C 1.47433 * 120.00159 * 179.97438 * 11 10 9 14 14 C 1.39222 * 120.27950 * 355.67294 * 13 11 10 15 15 C 1.38228 * 120.09079 * 180.27937 * 14 13 11 16 16 C 1.38824 * 120.67423 * 359.71805 * 15 14 13 17 17 C 1.37597 * 120.57318 * 0.02562 * 16 15 14 18 18 C 1.40711 * 119.87929 * 359.97438 * 17 16 15 19 19 C 1.40891 * 120.32596 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99615 * 216.32947 * 19 18 17 21 21 C 1.40267 * 120.00197 * 36.33258 * 19 18 17 22 22 N 1.30625 * 120.00058 * 190.50733 * 21 19 18 23 23 Si 1.86802 * 120.00015 * 10.50211 * 21 19 18 24 24 H 1.48509 * 109.46965 * 267.22708 * 23 21 19 25 25 H 1.48499 * 109.47061 * 27.22336 * 23 21 19 26 26 H 1.48502 * 109.47123 * 147.22806 * 23 21 19 27 27 O 1.33971 * 108.75722 * 359.57051 * 8 7 6 28 28 H 1.09001 * 109.47198 * 299.99769 * 1 2 3 29 29 H 1.08997 * 109.47182 * 59.99693 * 1 2 3 30 30 H 1.09000 * 109.47339 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47480 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47280 * 300.00247 * 3 2 1 33 33 H 1.09003 * 109.47310 * 59.99814 * 3 2 1 34 34 H 1.09000 * 109.46647 * 299.99949 * 4 2 1 35 35 H 1.08997 * 109.46936 * 60.00066 * 4 2 1 36 36 H 1.09002 * 109.46782 * 179.97438 * 4 2 1 37 37 H 1.07999 * 126.16555 * 359.97438 * 6 5 2 38 38 H 1.08992 * 109.47584 * 329.69292 * 9 8 7 39 39 H 1.09004 * 109.47483 * 209.69041 * 9 8 7 40 40 H 0.97001 * 119.99703 * 359.97438 * 10 9 8 41 41 H 1.08001 * 119.95839 * 359.97438 * 14 13 11 42 42 H 1.08003 * 119.66408 * 179.73476 * 15 14 13 43 43 H 1.08000 * 119.71145 * 180.02562 * 16 15 14 44 44 H 1.07996 * 120.06329 * 180.02562 * 17 16 15 45 45 H 0.97003 * 120.00012 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.7889 -1.9871 1.5701 7 7 2.4224 -2.2284 2.7315 8 6 3.0315 -1.1406 3.1089 9 6 3.8543 -0.9850 4.3617 10 7 5.2485 -1.3333 4.0766 11 6 6.1732 -1.2671 5.0549 12 8 5.8502 -0.9187 6.1744 13 6 7.5761 -1.6182 4.7682 14 6 7.9359 -2.1044 3.5143 15 6 9.2514 -2.4378 3.2515 16 6 10.2283 -2.2880 4.2264 17 6 9.9043 -1.8049 5.4734 18 6 8.5724 -1.4582 5.7665 19 6 8.2303 -0.9622 7.0401 20 1 7.2839 -1.2289 7.4871 21 6 9.1185 -0.1219 7.7274 22 7 8.9014 0.1721 8.9815 23 14 10.6120 0.5766 6.8493 24 1 11.7767 -0.3194 7.0645 25 1 10.3284 0.6792 5.3953 26 1 10.9185 1.9253 7.3903 27 8 2.8106 -0.1846 2.1967 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.1950 -2.6936 1.0093 38 1 3.4658 -1.6462 5.1361 39 1 3.8010 0.0480 4.7056 40 1 5.5061 -1.6116 3.1838 41 1 7.1854 -2.2260 2.7473 42 1 9.5221 -2.8185 2.2777 43 1 11.2514 -2.5529 4.0042 44 1 10.6709 -1.6913 6.2256 45 1 9.5155 0.7536 9.4567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601269217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:40 Heat of formation + Delta-G solvation = -0.433895 kcal Electronic energy + Delta-G solvation = -27174.208563 eV Core-core repulsion = 23350.929455 eV Total energy + Delta-G solvation = -3823.279108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.51953 -39.11885 -37.46223 -37.04296 -34.94830 -34.35983 -33.56261 -30.84210 -30.47853 -29.48320 -27.77594 -27.73446 -26.58345 -25.18417 -22.95199 -22.44860 -21.67296 -20.91181 -19.91467 -19.65756 -17.77904 -17.28592 -16.84139 -16.54392 -15.54383 -15.39326 -15.21964 -14.56003 -14.42951 -14.38564 -14.11629 -14.07268 -13.61635 -13.58454 -13.19756 -12.78245 -12.70238 -12.61215 -12.53267 -12.40218 -12.11021 -11.98734 -11.87207 -11.49063 -11.47715 -11.41427 -11.34758 -10.95709 -10.72711 -10.55445 -10.46459 -10.21455 -9.82503 -9.27402 -8.97947 -8.60028 -8.49169 -7.84237 -7.61313 -6.92036 -4.50639 1.23879 2.07092 2.41170 2.51629 2.59063 3.07773 3.16485 3.27873 3.74056 3.92201 3.96560 4.02747 4.23417 4.43435 4.47027 4.57220 4.74724 4.90130 5.15882 5.16487 5.32886 5.33843 5.36901 5.38905 5.44622 5.53582 5.56176 5.64578 5.70747 5.77501 5.83199 5.87176 5.93454 5.97197 6.04071 6.15190 6.34696 6.48962 6.76777 6.85954 7.07583 7.20250 7.37216 7.56806 7.62484 7.72542 7.99358 8.18299 8.45421 8.61302 8.84139 9.24818 10.04576 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.002742 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.916615 B =10209.772686 C =10649.325115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.018 3.982 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.032 4.032 6 C -0.041 4.041 7 N -0.464 5.464 8 C 0.178 3.822 9 C 0.225 3.775 10 N -0.745 5.745 11 C 0.566 3.434 12 O -0.524 6.524 13 C -0.249 4.249 14 C -0.039 4.039 15 C -0.254 4.254 16 C -0.064 4.064 17 C -0.224 4.224 18 C 0.117 3.883 19 C -0.401 4.401 20 H 0.125 0.875 21 C 0.079 3.921 22 N -0.791 5.791 23 Si 0.906 3.094 24 H -0.268 1.268 25 H -0.242 1.242 26 H -0.289 1.289 27 O -0.190 6.190 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.181 0.819 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.395 0.605 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 0.949 -17.912 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.018 3.982 3 C -0.203 4.203 4 C -0.198 4.198 5 C -0.086 4.086 6 C -0.180 4.180 7 N -0.193 5.193 8 C -0.028 4.028 9 C 0.100 3.900 10 N -0.403 5.403 11 C 0.360 3.640 12 O -0.401 6.401 13 C -0.254 4.254 14 C -0.058 4.058 15 C -0.273 4.273 16 C -0.083 4.083 17 C -0.243 4.243 18 C 0.112 3.888 19 C -0.427 4.427 20 H 0.143 0.857 21 C -0.142 4.142 22 N -0.414 5.414 23 Si 0.732 3.268 24 H -0.194 1.194 25 H -0.165 1.165 26 H -0.216 1.216 27 O -0.076 6.076 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.198 0.802 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.230 0.770 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.445 0.834 -16.423 20.622 hybrid contribution 0.750 0.707 -1.166 1.556 sum -11.695 1.541 -17.589 21.178 Atomic orbital electron populations 1.21933 0.92257 1.02770 1.02754 1.19137 0.95803 0.95311 0.87994 1.21884 1.01960 0.93903 1.02579 1.21939 1.01879 1.00478 0.95475 1.23443 0.97751 0.94664 0.92712 1.23005 1.04379 0.95418 0.95220 1.70503 1.10466 1.26178 1.12189 1.26328 1.00585 0.81885 0.94027 1.19366 0.80352 1.03490 0.86792 1.45997 1.06448 1.73317 1.14504 1.18348 0.85214 0.76924 0.83501 1.90748 1.80915 1.47010 1.21408 1.19293 0.92385 1.18510 0.95181 1.20772 0.95391 0.95193 0.94473 1.20286 0.93395 1.14417 0.99227 1.20745 0.97422 0.96762 0.93386 1.21153 0.96909 1.09012 0.97261 1.17538 0.89979 0.89383 0.91851 1.20212 1.04790 1.20677 0.97046 0.85742 1.26387 0.98190 0.95510 0.94103 1.69568 1.35477 1.27171 1.09222 0.86395 0.80530 0.77519 0.82311 1.19389 1.16522 1.21575 1.84433 1.53534 1.41414 1.28173 0.92052 0.91164 0.91862 0.91857 0.91576 0.91963 0.91850 0.91161 0.91944 0.80201 0.87578 0.89020 0.77018 0.88837 0.88518 0.88520 0.87709 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.35 37.16 0.31 -0.54 16 2 C 0.02 0.14 0.93 -155.66 -0.15 0.00 16 3 C -0.15 -1.14 8.06 37.16 0.30 -0.84 16 4 C -0.14 -0.90 8.35 37.16 0.31 -0.59 16 5 C -0.03 -0.35 5.70 -35.69 -0.20 -0.56 16 6 C -0.04 -0.48 11.24 -17.77 -0.20 -0.68 16 7 N -0.46 -6.79 11.29 -11.10 -0.13 -6.92 16 8 C 0.18 2.59 7.71 -12.95 -0.10 2.49 16 9 C 0.22 3.50 6.30 -5.20 -0.03 3.46 16 10 N -0.74 -13.18 5.50 -62.56 -0.34 -13.53 16 11 C 0.57 12.74 7.72 -12.52 -0.10 12.64 16 12 O -0.52 -13.58 13.54 5.26 0.07 -13.51 16 13 C -0.25 -5.81 5.92 -104.37 -0.62 -6.43 16 14 C -0.04 -0.79 9.52 -39.22 -0.37 -1.17 16 15 C -0.25 -5.01 10.03 -39.37 -0.39 -5.40 16 16 C -0.06 -1.34 10.01 -39.60 -0.40 -1.74 16 17 C -0.22 -5.28 7.00 -38.88 -0.27 -5.55 16 18 C 0.12 3.00 5.03 -106.54 -0.54 2.47 16 19 C -0.40 -11.14 8.31 -37.82 -0.31 -11.45 16 20 H 0.13 3.82 5.96 -52.48 -0.31 3.51 16 21 C 0.08 2.09 5.47 -17.30 -0.09 1.99 16 22 N -0.79 -21.36 13.92 55.56 0.77 -20.58 16 23 Si 0.91 20.58 24.52 -169.99 -4.17 16.41 16 24 H -0.27 -5.79 6.76 56.52 0.38 -5.41 16 25 H -0.24 -5.63 6.73 56.52 0.38 -5.25 16 26 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 27 O -0.19 -2.57 10.24 5.36 0.05 -2.52 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.35 8.02 -51.93 -0.42 -0.07 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.37 8.02 -51.93 -0.42 -0.05 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.40 6.30 6.51 -40.82 -0.27 6.03 16 41 H 0.09 1.57 6.42 -52.49 -0.34 1.23 16 42 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.11 2.42 5.01 -52.49 -0.26 2.16 16 45 H 0.29 6.95 8.29 -40.82 -0.34 6.62 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -30.94 370.95 -7.26 -38.20 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.26 Total: 8.73 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -2.86 Total: -11.89 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.30 Total: -41.03 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.13 Total: -16.03 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.17 Total: 16.41 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.94 -7.26 -38.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601269217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.770 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds